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At least 775 records · Page 43

Extracellular ATP inhibits root gravitropism at concentrations that inhibit polar auxin transport

Raising the level of extracellular ATP to mM concentrations similar to those found inside cells can block gravitropism of Arabidopsis roots. When plants are grown in Murashige and Skoog medium supplied with 1 mM ATP, their roots grow horizontally instead of growing straight down. Medium with 2 mM ATP induces root curling, and 3 mM ATP stimulates lateral root growth. When plants are transferred to medium containing exogenous ATP, the gravity response is reduced or in some cases completely blocked by ATP. Equivalent concentrations of ADP or inorganic phosphate have slight but usually statistically insignificant effects, suggesting the specificity of ATP in these responses. The ATP effects may be attributable to the disturbance of auxin distribution in roots by exogenously applied ATP, because extracellular ATP can alter the pattern of auxin-induced gene expression in DR5-beta-glucuronidase transgenic plants and increase the response sensitivity of plant roots to exogenously added auxin. The presence of extracellular ATP also decreases basipetal auxin transport in a dose-dependent fashion in both maize (Zea mays) and Arabidopsis roots and increases the retention of [(3)H]indole-3-acetic acid in root tips of maize. Taken together, these results suggest that the inhibitory effects of extracellular ATP on auxin distribution may happen at the level of auxin export. The potential role of the trans-plasma membrane ATP gradient in auxin export and plant root gravitropism is discussed.

Non-NASA Center↗

Ammonium and nitrate uptake by soybean during recovery from nitrogen deprivation

Soybean [Glycine max (L.) Merrill] plants that had been subjected to 15 d of nitrogen deprivation were resupplied for 10 d with 1.0 mol m-3 nitrogen provided as NO3-, NH4+, or NH4(+) + NO3- in flowing hydroponic culture. Plants in a fourth hydroponic system received 1.0 mol m-3 NO3- during both stress and resupply periods. Concentrations of soluble carbohydrates and organic acids in roots increased 210 and 370%, respectively, during stress. For the first day of resupply, however, specific uptake rates of nitrogen, determined by ion chromatography as depletion from solution, were lower for stressed than for non-stressed plants by 43% for NO3- resupply, by 32% for NH4(+) + NO3- resupply, and 86% for NH4+ resupply. When specific uptake of nitrogen for stressed plants recovered to rates for non-stressed plants at 6 to 8 d after nitrogen resupply, carbohydrates and organic acids in their roots had declined to concentrations lower than those of non-stressed plants. Recovery of nitrogen uptake capacity of roots thus does not appear to be regulated simply by the content of soluble carbon compounds within roots. Solution concentrations of NH4+ and NO3- were monitored at 62.5 min intervals during the first 3 d of resupply. Intermittent 'hourly' intervals of net influx and net efflux occurred. Rates of uptake during influx intervals were greater for the NH4(+)-resupplied than for the NO3(-)-resupplied plants. For NH4(+)-resupplied plants, however, the hourly intervals of efflux were more numerous than for NO3(-)-resupplied plants. It thus is possible that, instead of repressing NH4+ influx, increased accumulation of amino acids and NH4+ in NH4(+)-resupplied plants inhibited net uptake by stimulation of efflux on NH4+ absorbed in excess of availability of carbon skeletons for assimilation. Entry of NH4+ into root cytoplasm appeared to be less restricted than translocation of amino acids from the cytoplasm into the xylem.

NASA Discipline Number 61-10↗

Interpreting the universal phylogenetic tree

The universal phylogenetic tree not only spans all extant life, but its root and earliest branchings represent stages in the evolutionary process before modern cell types had come into being. The evolution of the cell is an interplay between vertically derived and horizontally acquired variation. Primitive cellular entities were necessarily simpler and more modular in design than are modern cells. Consequently, horizontal gene transfer early on was pervasive, dominating the evolutionary dynamic. The root of the universal phylogenetic tree represents the first stage in cellular evolution when the evolving cell became sufficiently integrated and stable to the erosive effects of horizontal gene transfer that true organismal lineages could exist.

Non-NASA Center↗

Sequential Precipitation Input Tagging (SPIT) to Estimate Water Transit Times and Hydrologic Tracer Dynamics Within Water‐Tagging Enabled Hydrologic Models

Determining the age distribution of water exiting a catchment is important for understanding groundwater storage and mixing. New water-tagging capabilities within models track precipitation events as they move through simulated storages, yet forward modeling of individual events may not systematically capture the full transit time distribution (TTD). Here, we present a “sequential precipitation input tagging” (SPIT) framework to tag all input precipitation at regular intervals during extended model simulations. Monthly tags over 7 years were applied at six National Ecological Observatory Network sites to calculate TTDs and derive mean virtual tracer age, $\overline{T_{V}}$, fractions of young water, F yw , and hydrologic tracer concentrations (water isotopes δ 18 O and δ 2 H) within a tagging enabled version of the Weather Research and Forecast hydrologic model (WRF-Hydro). Throughout seven simulation years, the fraction of simulated discharge derived from tagged events, F tag , increased each year, with the final year's F tag ranging from 66% to 100% and highlights the need to apply SPIT over many years to understand TTDs. When the F tag was >75%, simulated $\overline{T_{V}}$ ranged 179–923 days and F yw 0.6%–23.9%, with daily values exhibiting a power-law relationship with precipitation, discharge, and groundwater. Through implementation of SPIT, we find this hydrologic model configuration performs poorly in estimation of $\overline{T_{V}}$ and F yw (root mean squared error of 469 days and 14.4% respectively), suggesting it misrepresents subsurface mixing. Thus, the SPIT framework provides a reproducible approach to calculate watershed transit times within tagging enabled models and thereby assess and improve representation of hydrologic processes.

fraction of young water↗

Optimal damper location in the vibration control of large space structures

The problem of finding the optimal location of active dampers for the vibration control of space structures is investigated. The optimal location is where maximum damping can be introduced to a particular vibration mode. To this end, classical root locus techniques are used to study the effect on eigenvalues of placing a damper on an undamped structure. An efficient formulation is derived which avoids the solution of the damped eigenvalue problem. Based on the observation of the results for a free-free beam model, a Minimum Constrained Frequency Criterion (MCFC) for locating the optimal damper location is proposed.

Wang, B. P.↗

Increased Agrobacterium-mediated transformation and rooting efficiencies in canola (Brassica napus L.) from hypocotyl segment explants

An efficient protocol for the production of transgenic Brassica napus cv. Westar plants was developed by optimizing two important parameters: preconditioning time and co-cultivation time. Agrobacterium tumefaciens-mediated transformation was performed using hypocotyls as explant tissue. Two variants of a green fluorescent protein (GFP)-encoding gene--mGFP5-ER and eGFP--both under the constitutive expression of the cauliflower mosaic virus 35S promoter, were used for the experiments. Optimizing the preconditioning time to 72 h and co-cultivation time with Agrobacterium to 48 h provided the increase in the transformation efficiency from a baseline of 4% to 25%. With mGFP5-ER, the transformation rate was 17% and with eGFP it was 25%. Transgenic shoots were selected on 200 mg/l kanamycin. Rooting efficiency was 100% on half-strength Murashige and Skoog medium with 10 g/l sucrose and 0.5 mg/l indole butyric acid in the presence of kanamycin.

NASA Discipline Life Sciences Technologies↗

Regulation of root hair initiation and expansin gene expression in Arabidopsis

The expression of two Arabidopsis expansin genes (AtEXP7 and AtEXP18) is tightly linked to root hair initiation; thus, the regulation of these genes was studied to elucidate how developmental, hormonal, and environmental factors orchestrate root hair formation. Exogenous ethylene and auxin, as well as separation of the root from the medium, stimulated root hair formation and the expression of these expansin genes. The effects of exogenous auxin and root separation on root hair formation required the ethylene signaling pathway. By contrast, blocking the endogenous ethylene pathway, either by genetic mutations or by a chemical inhibitor, did not affect normal root hair formation and expansin gene expression. These results indicate that the normal developmental pathway for root hair formation (i.e., not induced by external stimuli) is independent of the ethylene pathway. Promoter analyses of the expansin genes show that the same promoter elements that determine cell specificity also determine inducibility by ethylene, auxin, and root separation. Our study suggests that two distinctive signaling pathways, one developmental and the other environmental/hormonal, converge to modulate the initiation of the root hair and the expression of its specific expansin gene set.

NASA Discipline Plant Biology↗

Abnormalities of the QT interval in primary disorders of autonomic failure

BACKGROUND: Experimental evidence shows that activation of the autonomic nervous system influences ventricular repolarization and, therefore, the QT interval on the ECG. To test the hypothesis that the QT interval is abnormal in autonomic dysfunction, we examined ECGs in patients with severe primary autonomic failure and in patients with congenital dopamine beta-hydroxylase (DbetaH) deficiency who are unable to synthesize norepinephrine and epinephrine. SUBJECTS AND METHODS: Maximal QT and rate-corrected QT (QTc) intervals and adjusted QTc dispersion [(maximal QTc - minimum QTc on 12 lead ECG)/square root of the number of leads measured] were determined in blinded fashion from ECGs of 67 patients with primary autonomic failure (36 patients with multiple system atrophy [MSA], and 31 patients with pure autonomic failure [PAF]) and 17 age- and sex-matched healthy controls. ECGs of 5 patients with congenital DbetaH deficiency and 6 age- and sex-matched controls were also analyzed. RESULTS: Patients with MSA and PAF had significantly prolonged maximum QTc intervals (492+/-58 ms(1/2) and 502+/-61 ms(1/2) [mean +/- SD]), respectively, compared with controls (450+/-18 ms(1/2), P < .05 and P < .01, respectively). A similar but not significant trend was observed for QT. QTc dispersion was also increased in MSA (40+/-20 ms(1/2), P < .05 vs controls) and PAF patients (32+/-19 ms(1/2), NS) compared with controls (21+/-5 ms(1/2)). In contrast, patients with congenital DbetaH deficiency did not have significantly different RR, QT, QTc intervals, or QTc dispersion when compared with controls. CONCLUSIONS: Patients with primary autonomic failure who have combined parasympathetic and sympathetic failure have abnormally prolonged QT interval and increased QT dispersion. However, QT interval in patients with congenital DbetaH deficiency was not significantly different from controls. It is possible, therefore, that QT abnormalities in patients with primary autonomic failure are not solely caused by lesions of the sympathetic nervous system, and that the parasympathetic nervous system is likely to have a modulatory role in ventricular repolarization.

Non-NASA Center↗

Evidence for anti-synergism between ion-assisted etching and in-plasma photoassisted etching of silicon in a high-density chlorine plasma

Etching of p-Si in 60 mTorr 10%Cl2/90%Ar Faraday-shielded inductively coupled high density plasmas was investigated under both ionassisted etching (IAE) and photoassisted etching (PAE) conditions. Real-time etching rates and after-etching Si surface chemical compositions were obtained by laser interferometry and vacuum-transfer x-ray photoelectron spectroscopy (XPS), respectively. Precisely controlled ion energy distributions (IEDs) were generated by applying pulsed negative DC bias on the conductive sample stage. Above a 36 eV threshold at a total flow rate of 250 SCCM, the IAE rate increased with the square root of the ion energy. In contrast to the DC bias, etching under RF bias did not exhibit a threshold ion energy because of the wide IED. XPS spectra revealed that the surface layer under PAE conditions had a significantly lower chlorine content, composed of only SiCl. Under IAE conditions, however, silicon dangling bonds (Si•), SiCl 2 , and SiCl 3 were found on the surface, in addition to SiCl, with a relative abundance of SiCl > SiCl 2 , and SiCl 3 . The absence of higher chlorides and Si• under PAE conditions suggested that vacuum ultraviolet photons and above threshold-energy ions interact with the surface very differently. By varying the duty cycle of the pulsed DC bias, it was found that the IAE rate scaled with the energetic ion dose, but only for low duty cycles. For higher duty cycles, the apparent IAE yield fell off with an increasing Cl coverage on the surface, as the duty cycle went up, which pointed to a negative synergy (antisynergism) between PAE and IAE as the explanation. This antisynergism was further supported by the observed decrease of the total etching rate with an increasing period of the pulsed DC bias. A plausible mechanism is that increasing the pulsing period causes more near-surface damage, creating more recombination centers that lead to a higher loss rate of electron-hole pairs through recombination, thereby reducing the PAE rate.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Comparative genomics and stable isotope analysis reveal the saprotrophic-pathogenic lifestyle of a neotropical fungus

In terrestrial forested ecosystems, fungi may interact with trees in at least three distinct ways: (i) associated with roots as symbionts; (ii) as pathogens in roots, trunks, leaves, flowers, and fruits; or (iii) decomposing dead tree tissues on soil or even on dead tissues in living trees. Distinguishing the latter two nutrition modes is rather difficult in Hymenochaetaceae (Basidiomycota) species. Herein, we have used an integrative approach of comparative genomics, stable isotopes, host tree association, and bioclimatic data to investigate the lifestyle ecology of the scarcely known neotropical genus Phellinotus, focusing on the unique species Phellinotus piptadeniae. This species is strongly associated with living Piptadenia gonoacantha (Fabaceae) trees in the Atlantic Forest domain on a relatively high precipitation gradient. Phylogenomics resolved P. piptadeniae in a clade that also includes both plant pathogens and typical wood saprotrophs. Furthermore, both genome-predicted Carbohydrate-Active Enzymes (CAZy) and stable isotopes (δ 13 C and δ 15 N) revealed a rather flexible lifestyle for the species. Altogether, our findings suggest that P. piptadeniae has been undergoing a pathotrophic specialization in a particular tree species while maintaining all the metabolic repertoire of a wood saprothroph.

59 BASIC BIOLOGICAL SCIENCES↗

Transducer Resolution Effect on Pressure Fluctuations Beneath Hypersonic Turbulent Boundary Layers

The size of a pressure transducer is known to affect the accuracy of measurements of wall-pressure fluctuations beneath a turbulent boundary layer because of spatial averaging over the sensing area of the transducer. In this paper, the effect of finite transducer size is investigated by applying spatial averaging or wavenumber filters to a database of hypersonic wall pressure generated from a direct numerical simulation (DNS) that simulates the turbulent portion of the boundary layer over a sharp 7° half-angle cone at nominally Mach 8. Here, a good comparison between the DNS and the experiment in the Sandia Hypersonic Wind Tunnel at Mach 8 is achieved after spatial averaging is applied to the DNS data over an area similar to the sensing area of the transducer. The study shows that a finite sensor size similar to that of the PCB132 transducer can cause significant attenuation in the root-mean-square and power spectral density (PSD) of wall-pressure fluctuations, and the attenuation effect is identical between cone and flat plate configurations at the same friction Reynolds number. The Corcos theory is found to successfully compensate for the attenuated high-frequency components of the wall-pressure PSD.

42 ENGINEERING↗

Sweet potato for closed ecological life support systems using the nutrient film technique

Sweet potatoes were grown hydroponically using the nutrient film technique (NFT) in support of the Closed Ecological Life Support System (CELSS) program. Experiments in the greenhouse with the TI-155 sweet potato cultivar produced up to 1790 g/plant of fresh storage roots. Studies with both TI-155 and Georgia Jet cultivars resulted in an edible biomass index of approximately 60 percent, with edible biomass linear growth rates of 12.1 to 66.0 g m(exp -2)d(exp -1) in 0.05 to 0.13 sq meters in 105 to 130 days. Additional experimental results are given. All studies indicate good potential for sweet potatoes in CELSS.

Loretan, P. A.↗

The pattern of secondary root formation in curving roots of Arabidopsis thaliana (L.) Heynh

A gravitational stimulus was used to induce the curvature of the main root of Arabidopsis thaliana. The number of secondary roots increased on the convex side and decreased on the concave side of any curved main root axes in comparison with straight roots used as the control. The same phenomenon was observed with the curved main roots of plants grown on a clinostat and of mutant plants exhibiting random root orientation. The data suggest that the pattern of lateral root formation is associated with curvature but is independent of the environmental stimuli used to induce curvature.

Non-NASA Center↗

Early events in geotropism of seedling shoots

Developments during the first ten minutes of geotropic stimulation in plant seedling shoots are reviewed. Topics include induction and curvature; early processes; the relationship between auxin, electric field, calcium, and differential growth; gravity reception leading to Went-Cholodny transport; and comparison of root and shoot. Early processes reviewed are sedimentation of amyloplasts, release of ethylene, rise of electrical and auxin asymmetry, redistribution of calcium, asymmetric vascular transport, increase in tendency to deposit callose, and simulation of putative exocytotic voltage transients.

Review↗

Internode and petiole elongation of soybean in response to photoperiod and end-of-day light quality

Elongation of main stem internodes and petioles of soybeans, Glycine max 'Ransom,' was examined in response to various photoperiod/temperature combinations and to end-of-day (EOD) light quality. Photoperiod treatments consisted of 10, 14, and 16 h in combination with day/night temperatures of 18/14, 22/18, 26/22, 30/26, and 34/30 C. The EOD treatments consisted of exposing plants to illumination from either incandescent (high far-red component, FR) or fluorescent (high red component, R) lamps during the final 0.5 h of a 10-h photoperiod. Internode elongation was not significantly promoted by the photoperiod treatments, and, in fact, under the two highest temperature regimes, internode elongation was suppressed under the longer photoperiods. Petiole elongation, however, was enhanced under the longer photoperiods at all temperatures. In the EOD light study, internode and petiole elongation was significantly greater on plants exposed to 0.5 h EOD from incandescent lamps than from fluorescent. Under the incandescent EOD treatment, plants increased dry matter production by 41% and exhibited greater partitioning of assimilates in stem and root portions than under fluorescent EOD.

NASA Program CELSS↗

OVERFLOW Analysis of Supersonic Retropropulsion Testing on a Blunt Mars Entry Vehicle Concept

Supersonic retropropulsion (SRP) flow over a Hypersonic Inflatable Aerodynamic Decelerator (HIAD) blunt-body vehicle was simulated using the Overflow Computational Fluid Dynamics (CFD) solver. Two nozzle configurations were tested (1E and 1F) as a subset of the seven total configurations in the Descent System Study (DSS) testing campaign. A generalized, Adaptive Mesh Refinement (AMR) shock capturing and plume refinement technique was developed and calibrated for producing automatic and unique grid systems optimized for any given testing condition. Solution independence from grid resolution was determined by successively increasing grid refinement until asymptotic convergence of the mean aerodynamic loads was observed. Overflow Reynolds-averaged Navier-Stokes (RANS) solutions produced realistic SRP flow phenomena, including Mach disk normal shocks contained in high-thrust plumes and bow shock triple-points. Solutions for the 1E nozzle configuration were steady. Conversely, a subset of the 1F test conditions were unsteady and exhibited periodic, non-sinusoidal expansions and contractions of the streamwise-oriented plume, resulting in unsteady aerodynamic loads on the vehicle. Initial investigations into the effect of turbulence modeling fidelity demonstrated significant differences between the aerodynamic loads simulated with RANS and Detached Eddy Simulation (DES). Multiple flow mechanisms were identified as root causes of these differences, including bow shock shape augmentation and reduced entrainment due to reduced turbulence in the DES simulations. Initial comparisons of pitching moment control authority and aerodynamic drag performance between the tested nozzle configurations demonstrated that the 1E configuration may be more advantageous for the Mars Entry, Descent, and Landing (EDL) task.

Supersonic Retropropulsion↗

Status of the OECD/NEA Watts Bar unit 1 benchmark and calculations of local reactor core power data of the Zero Power physics tests

The paper aims to provide an update on the status of the Organization for Economic Cooperation and Development (OECD) / the Nuclear Energy Agency (NEA) Tennessee Valley Authority (TVA) Watts Bar 1 (WB1) Multi-Physics Multi-Cycle depletion benchmark and the results associated with Exercise 1. The benchmark relies on the set of benchmark progression problems developed by the Department of Energy (DOE) Consortium for the Advanced Simulation of Light Water Reactors (CASL) for the Virtual Environment for Reactor (VERA), which are based on real plant design and operational data. The OECD/NEA TVA WB1 benchmark is designed for validation of both traditional and novel high-fidelity multi-physics codes to analyze Pressurized Water Reactors (PWR) depletion cycles. The activities are conducted under the Expert Group on Reactor Systems Multi-Physics (EGMUP) at NEA/OECD. In this work, we analyze Exercise 1 of the benchmark: stand-alone Three-Dimensional (3D) neutronics at Start-up Zero Power Physics Test (ZPPT) at Hot Zero Power Conditions (HZP) and the resulting power maps. The code used to model the exercise is the continuous energy Monte Carlo code Serpent 2.1.31 along with the nuclear data library ENDF/B-VII.1. Serpent results are compared with the high-fidelity deterministic code MPACT, which is part of VERA. The paper presents three selected results from power calculations required output. The results compared are the normalized axially integrated radial core power maps, the normalized axial averaged core power shapes, and the normalized core hottest and coldest assemblies radial power maps. The Root Mean Square Deviation (RMSD) between Serpent and MPACT is 0.51 % for the axially integrated radial core power map, 1.41 % for the axial averaged core power shape, 2.42 % for the hottest assembly axial power shape, 0.88 % for the coldest assembly axial integrated hottest assembly radial pin power map, and 0.17 % for the axially integrated coldest assembly radial pin power map. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Subsidence of topography on Io

The underlying roots of Io's topographic features are softened and eroded by contact with the hot mantle, resulting in a subsidence which is analogous to the progress of a butter pat on a frying pan. This process would be offset by crustal thickening due to continuing volcanism if the rate for this phenomenon were more than the observed 1 cm/year or less. Because the crustal thinning would occur at about 50 cm/year if the material underneath were a pure magma ocean, Io cannot have a global magna ocean, and interior viscosities greater than about 10 to the 10th P are implied.

Webb, Erik K.↗