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At least 775 records · Page 43

Dust Aerosol Retrieval Over the Oceans With the MODIS/VIIRS Dark‐Target Algorithm: 1. Dust Detection

To prepare for implementation of a new aerosol retrieval specifically designed for dust aerosol over ocean in the operational Dark-Target (DT) algorithms for the Moderate-resolution Imaging Spectrometer (MODIS) and Visible Infrared Imaging Radiometer Suite (VIIRS) satellite sensors, we focus on the challenge of detecting dust. We first survey the literature on existing dust detection algorithms and then develop an innovative algorithm that combines near-UV (deep blue), visible, and thermal infrared (TIR) wavelength spectral tests. The new detection algorithm is applied to Terra and Aqua MODIS granules and compared with other dust detection possibilities from existing MODIS products. Quantitative evaluation of the new dust detection algorithm is conducted using both a collocated AERONET-MODIS data set and collocated Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation (CALIPSO)-MODIS data set. From comparison with both AERONET and CALIOP measurements, we estimate the new dust detection algorithm detects about 30% of weakly dusty pixels and more than 80% of heavily dusty pixels, with false detections in the range of 1–2%. The very low false detection rate is particularly noteworthy in comparison with existing literature. Compared with the dust flag currently available as part of the MODIS cloud mask product (MOD35/MYD35), and dust classification based on commonly used thresholds with aerosol optical depth (AOD) and Angstrom exponent (AE), the new dust detection algorithm finds more dusty pixels and fewer false detections.

spectral dust detection↗

TorchBraid: High-Performance Layer-Parallel Training of Deep Neural Networks with MPI and GPU Acceleration

TorchBraid is a high-performance implementation of layer-parallel training for deep neural networks (DNNs) supporting MPI-based parallelism and GPU acceleration. Layer-parallel training has been developed to overcome the serialization inherent in forward and backward propagation of DNNs that limits utilization of computational resources in the strong scaling limit. To achieve this, TorchBraid integrates the PyTorch neural network framework with the state-of-the-art XBraid time-parallel library. Furthermore, this article presents the use and performance of TorchBraid, in addition to solutions for overcoming the algorithmic challenges inherent in combining automatic differentiation with layer-parallel. Results are presented with and without GPU acceleration for the Tiny ImageNet and MNIST image classification data sets, as well as recurrent neural networks. Overall, TorchBraid enables fast training of DNNs, both in a strong and weak scaling context. In addition to the TorchBraid software, several new advances in applying layer-parallel algorithms are detailed. Integration of layer-parallel with data-parallel algorithms is presented for the first time, showing the computational advantages of the combination. Standard deep learning techniques, like batch-normalization, are developed for layer-parallel training. Finally, a new approach combining layer-parallel with spatial coarsening in order to accelerate training for 3D image classification shows roughly a 10× speedup over serial execution.

Layer-parallel↗

Algorithm for Detection of Ground and Canopy Cover in Micropulse Photon-Counting Lidar Altimeter Data in Preparation for the ICESat-2 Mission

NASA's Ice, Cloud and Land Elevation Satellite-II (ICESat-2) mission is a decadal survey mission (2016 launch). The mission objectives are to measure land ice elevation, sea ice freeboard, and changes in these variables, as well as to collect measurements over vegetation to facilitate canopy height determination. Two innovative components will characterize the ICESat-2 lidar: 1) collection of elevation data by a multibeam system and 2) application of micropulse lidar (photon-counting) technology. A photon-counting altimeter yields clouds of discrete points, resulting from returns of individual photons, and hence new data analysis techniques are required for elevation determination and association of the returned points to reflectors of interest. The objective of this paper is to derive an algorithm that allows detection of ground under dense canopy and identification of ground and canopy levels in simulated ICESat-2 data, based on airborne observations with a Sigma Space micropulse lidar. The mathematical algorithm uses spatial statistical and discrete mathematical concepts, including radial basis functions, density measures, geometrical anisotropy, eigenvectors, and geostatistical classification parameters and hyperparameters. Validation shows that ground and canopy elevation, and hence canopy height, can be expected to be observable with high accuracy by ICESat-2 for all expected beam energies considered for instrument design (93.01%-99.57% correctly selected points for a beam with expected return of 0.93 mean signals per shot (msp), and 72.85%-98.68% for 0.48 msp). The algorithm derived here is generally applicable for elevation determination from photoncounting lidar altimeter data collected over forested areas, land ice, sea ice, and land surfaces, as well as for cloud detection.

Algorithms↗

Fast Image Texture Classification Using Decision Trees

Texture analysis would permit improved autonomous, onboard science data interpretation for adaptive navigation, sampling, and downlink decisions. These analyses would assist with terrain analysis and instrument placement in both macroscopic and microscopic image data products. Unfortunately, most state-of-the-art texture analysis demands computationally expensive convolutions of filters involving many floating-point operations. This makes them infeasible for radiation- hardened computers and spaceflight hardware. A new method approximates traditional texture classification of each image pixel with a fast decision-tree classifier. The classifier uses image features derived from simple filtering operations involving integer arithmetic. The texture analysis method is therefore amenable to implementation on FPGA (field-programmable gate array) hardware. Image features based on the "integral image" transform produce descriptive and efficient texture descriptors. Training the decision tree on a set of training data yields a classification scheme that produces reasonable approximations of optimal "texton" analysis at a fraction of the computational cost. A decision-tree learning algorithm employing the traditional k-means criterion of inter-cluster variance is used to learn tree structure from training data. The result is an efficient and accurate summary of surface morphology in images. This work is an evolutionary advance that unites several previous algorithms (k-means clustering, integral images, decision trees) and applies them to a new problem domain (morphology analysis for autonomous science during remote exploration). Advantages include order-of-magnitude improvements in runtime, feasibility for FPGA hardware, and significant improvements in texture classification accuracy.

Thompson, David R.↗

Safe and Robust Binary Classification and Fault Detection Using Reinforcement Learning

In this paper, we propose a learning-based method utilizing the Soft Actor-Critic (SAC) algorithm to train a binary Support Vector Machine (SVM) classifier. This classifier is designed to identify valid input spaces in high-dimensional, highly constrained systems while minimizing the total runtime of offline simulations. The simulations adapt their runtime based on the likelihood that a given training input will be informative to the classifier. Furthermore, we introduce a method for using the trained SAC model to predict whether a desired system input is likely to violate constraints, along with a technique to adjust the input as necessary. Additionally, we explore the potential of this model to detect faults or adversarial attacks within the system. The effectiveness of our approach is demonstrated through various simulations of challenging classification problems and a constrained quadrotor model.

Netter, Josh [Georgia Institute of Technology, Atl↗

Software For Multivariate Bayesian Classification

PHD general-purpose classifier computer program. Uses Bayesian methods to classify vectors of real numbers, based on combination of statistical techniques that include multivariate density estimation, Parzen density kernels, and EM (Expectation Maximization) algorithm. By means of simple graphical interface, user trains classifier to recognize two or more classes of data and then use it to identify new data. Written in ANSI C for Unix systems and optimized for online classification applications. Embedded in another program, or runs by itself using simple graphical-user-interface. Online help files makes program easy to use.

Saul, Ronald↗

Dependence of Z-R Relations on the Rain Type Classification Scheme

The TRMM Global Validation Program is giving us a unique opportunity to compare radar datasets from different sites since they are analyzed in a relatively uniform procedure. Monthly Ze-R relations for four different sites (i.e, Melbourne Florida, Houston Texas, Darwin Australia and Kwajalein Atoll) were derived. The relations were obtained using the Window Probability Matching Method (WPMM). This version of the PMM relies on matching unconditional probabilities of rain rates, R, and radar reflectivity, Ze, using rain gauge and radar data, respectively. This procedure was done separately for convective and stratiform rain type using the Steiner classification procedure. The radar and gauge data from all sites were quality controlled using the same algorithms, which include also an automatic procedure to filter unreliable rain gauge data upon comparison to radar data. An adjusted power law Z-R for each rain type was also derived by comparing the radar-gauge coincident pairs in order to adjust the total monthly rainfall to match the gauges. The obtained PMM based Ze-R relations are found to be curved lines in log-log space rather than any straight line power law. While the PMM based Ze-R curves were always distinctly different between the convective and stratiform rain, the power law based Z-R, in few cases, was found to be the same for both types. In general, a given reflectivity was matched to a much lower rain intensity in the convective rainfall as compared to that in stratiform rainfall. These findings are inherently contradictory to previous findings based on disdrometer data and suggest some precaution for using the latter Z-R relations on radar data when the partition of stratiform and convective rainfall amount is in concern. The inverse trends in the relations might be caused by effects such as partial beam fillings, the use of different classification schemes, as well as having a distinct difference in the Z-R relations between the initial convective and the trailing transition regions as suggested by recent findings.

Amitai, Eyal↗

A high-throughput workflow to analyze sequence-conformation relationships and explore hydrophobic patterning in disordered peptoids

Understanding how a macromolecule’s primary sequence governs its conformational landscape is crucial for elucidating its function, yet these design principles are still emerging for macromolecules with intrinsic disorder. Herein, we introduce a high-throughput workflow that implements a practical colorimetric conformational assay, introduces a semi-automated sequencing protocol using matrix-assisted laser desorption/ionization and tandem mass spectrometry (MALDI-MS/MS), and develops a generalizable sequence-structure algorithm. Using a model system of 20mer peptidomimetics containing polar glycine and hydrophobic N-butylglycine residues, we identified nine classifications of conformational disorder and isolated 122 unique sequences across varied compositions and conformations. Conformational distributions of three compositionally identical library sequences were corroborated through atomistic simulations and ion mobility spectrometry coupled with liquid chromatography. A data-driven strategy was developed using existing sequence variables and data-derived “motifs” to inform a machine-learning algorithm toward conformation prediction. Here, this multifaceted approach enhances our understanding of sequence-conformation relationships and offers a powerful tool for accelerating the discovery of materials with conformational control.

data-driven analysis↗

Hyperspectral imaging for real-time waste materials characterization and recovery using endmember extraction and abundance detection

Hyperspectral imaging, combined with advanced spectral unmixing techniques and artificial intelligence, offers a powerful solution for improving material identification and classification. Here, this study evaluates the effectiveness of the pixel purity index and the sequential maximum angle convex cone algorithms in extracting and validating spectral signatures from pure samples of paper components (cellulose and lignin) and plastic (polypropylene). Principal-component analysis showed that both algorithms captured nearly all relevant variance for the tested materials. Spectral signatures were compared using the spectral angle mapper, revealing high similarity in the short-wave infrared region and greater variability in the visible near-infrared range. The methodology was then applied to a disposable coffee cup to detect and quantify mixed materials, accurately estimating material abundance and object area with less than 1% error. This approach enhances material classification, supporting product verification, quality control, and automated sorting for sustainable waste management and resource recovery.

36 MATERIALS SCIENCE↗

Integration of historical map and aerial imagery to characterize long-term land-use change and landscape dynamics: An object-based analysis via Random Forests

Tracking Earth’s past helps us to move from hindsight to foresight in seeking landscape sustainability, a pursuit aided by modern mapping capabilities but hindered by a dearth of historical landscape information. To fill the data gap and exemplify the use of old map for land-use change sciences, we combined a paper-based US civil war map and aerial photos to derive land-use history and landscape dynamics at fine scales for a region near Chancellorsville, VA, USA, from 1867 to 2014. We also tested how advanced algorithms—object-based analysis and random forests (RF)—could aid in data processing. Automatic classification of the 1867 map proved difficult, but its manual digitization could benefit from object-based image segmentation. Classifying digital aerial images was more accurate via the object-based than pixel-based method, but only if the images were segmented appropriately. In the object-based classification, spectral-based features were much more important than shape/geometry features, as ranked by RF. During the 147 years, 32% of the region changed in land type. Settlement and roads increased in extent by 1850% and 691%, respectively, and woodland decreased by 19%. These changes fragmented the landscape, altered the hydrological regime, and affected river morphology. The utility of old maps exemplified here provides an impetus for exploring and leveraging extant old maps or historical records to support land-use and global change research. Our study also connotes the importance of geotagging current data, such as photos and videos, that may serve as a baseline to document future landscape change.

Historical map, object-based, Random Forests, old ↗

Evaluation of new approaches to the access of official monitoring results for live bivalves molluscs

Abstract Background Live bivalve molluscs, echinoderms, tunicates and marine gastropod are referred in EU food laws, and require member states to implement official controls in classified production areas, with the monitoring and classification of those areas. If, due to contaminant tests results, a production area is closed, any product from there is prohibited to be commercialized. Mobile applications optical character recognition (OCR) functionalities could ease the access to contaminant levels and production area classifications. This study verifies what information is available in live bivalves’ labels, describes an OCR algorithm for those labels and evaluates it. Methods 86 labels were selected from four sale points in Lisbon, and photographed using smartphones. Each label was evaluated by a human to determine what data was available (either required or not). An OCR algorithm was developed and applied on the collected labels and validated against the data extracted by the human analysis. Results The analysis shows that all the labels included the required information, and 63% of the labels included the identifier for the production zone. The label-reading algorithm performs with an accuracy of 79.85% for the individual values. Conclusion High accuracy of the developed label-reading algorithm shows potential for providing instant automatic access to the date and production area, but is affected by the variability on the label structure. Although not required by food laws, the majority of the sampled labels included complementary information (classified production area) that will allow access to more precise information about the existing biotoxin tests and analysis results.

da Costa, Manuel Beja↗

Automatic information extraction from childhood cancer pathology reports

The International Classification of Childhood Cancer (ICCC) facilitates the effective classification of a heterogeneous group of cancers in the important pediatric population. However, there has been no development of machine learning models for the ICCC classification. We developed deep learning-based information extraction models from cancer pathology reports based on the ICD-O-3 coding standard. In this article, we describe extending the models to perform ICCC classification. We developed 2 models, ICD-O-3 classification and ICCC recoding (Model 1) and direct ICCC classification (Model 2), and 4 scenarios subject to the training sample size. We evaluated these models with a corpus consisting of 29206 reports with age at diagnosis between 0 and 19 from 6 state cancer registries. Our findings suggest that the direct ICCC classification (Model 2) is substantially better than reusing the ICD-O-3 classification model (Model 1). Applying the uncertainty quantification mechanism to assess the confidence of the algorithm in assigning a code demonstrated that the model achieved a micro-F1 score of 0.987 while abstaining (not sufficiently confident to assign a code) on only 14.8% of ambiguous pathology reports. Our experimental results suggest that the machine learning-based automatic information extraction from childhood cancer pathology reports in the ICCC is a reliable means of supplementing human annotators at state cancer registries by reading and abstracting the majority of the childhood cancer pathology reports accurately and reliably.

60 APPLIED LIFE SCIENCES↗

Parallel Multivariate Spatio-Temporal Clustering of Large Ecological Datasets on Hybrid Supercomputers

A proliferation of data from vast networks of remote sensing platforms (satellites, unmanned aircraft systems (UAS), airborne etc.), observational facilities (meteorological, eddy covariance etc.), state-of-the-art sensors, and simulation models offer unprecedented opportunities for scientific discovery. Unsupervised classification is a widely applied data mining approach to derive insights from such data. However, classification of very large data sets is a complex computational problem that requires efficient numerical algorithms and implementations on high performance computing (HPC) platforms. Additionally, increasing power, space, cooling and efficiency requirements has led to the deployment of hybrid supercomputing platforms with complex architectures and memory hierarchies like the Titan system at Oak Ridge National Laboratory. The advent of such accelerated computing architectures offers new challenges and opportunities for big data analytics in general and specifically, large scale cluster analysis in our case. Although there is an existing body of work on parallel cluster analysis, those approaches do not fully meet the needs imposed by the nature and size of our large data sets. Moreover, they had scaling limitations and were mostly limited to traditional distributed memory computing platforms. We present a parallel Multivariate Spatio-Temporal Clustering (MSTC) technique based on k-means cluster analysis that can target hybrid supercomputers like Titan. We developed a hybrid MPI, CUDA and OpenACC implementation that can utilize both CPU and GPU resources on computational nodes. We describe performance results on Titan that demonstrate the scalability and efficacy of our approach in processing large ecological data sets.

Sreepathi, Sarat↗

Improving ADAM through an implicit-explicit (IMEX) time-stepping approach

The ADAM optimizer, often used in machine learning for neural network training, corresponds to an underlying ordinary differential equation (ODE) in the limit of very small learning rates. Here, this work shows that the classical ADAM algorithm is a first-order implicit-explicit (IMEX) Euler discretization of the underlying ODE. Employing the time discretization point of view, we propose new extensions of the ADAM scheme obtained by using higher-order IMEX methods to solve the ODE. Based on this approach, we derive a new optimization algorithm for neural network training that performs better than classical ADAM on several regression and classification problems.

97 MATHEMATICS AND COMPUTING↗

Formalized Configurational Calculations of Parallel Mechanisms

Theoretically possible configurations of parallel mechanisms are classified, taking account of the hinge arrangement at the base and the moving platform. This classification permits the formulation of computational templates for each class of configurations. The associated computational algorithms require a minimum of initial data.

42 ENGINEERING↗

ShupeTurner cloud microphysics

This product is the ShupeTurner cloud microphysics product derived for the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition in the central Arctic. The product includes time-height derivations of the cloud type (phase type) and the condensed water content and characteristic effective particle size for liquid and ice hydrometeor populations. Additionally, it includes the vertical integral of the condensed water content for liquid and ice, i.e., the liquid water path and ice water path. These are derived using a combination of sensors, including: cloud radar, depolarization lidar, microwave radiometer, ceilometer, and radiosondes. During MOSAiC, these sensors were installed and operated onboard the Polarstern icebreaker while within the Arctic sea ice. Most data were obtained while Polarstern was moored to the MOSAiC sea ice floe, passively drifting through the Arctic. However, the data from 16 May 2020 - 17 June 2020 and 31 July 2020 - 21 August 2020 were obtained while Polarstern was underway transiting through the sea ice during relocations of the expedition. General details of the retrieval algorithm, its application, and uncertainties are provided in Shupe et al. (2015), with the cloud classification being described in more detail in Shupe (2007). General details about the MOSAiC expedition including instruments, locations, and meteorological context is provided in Shupe et al. (2022).

54 ENVIRONMENTAL SCIENCES↗

KL techniques for optimal processing of time sequential imagery

Time-sequential imagery is difficult to analyze because of its high dimensionality. This paper advances a new algorithm that screens input data in an intelligent way, discards data with negligible information, and uses the remaining images to represent the sequence in an optimal compact form. Data are presented to illustrate how this algorithm can be used to do novelty filtering, novelty detection, segmentation, background independent modeling, and classification.

Vermeulen, Pieter↗

Glaciological studies in the central Andes using AIRSAR/TOPSAR

The interaction of climate and topography in mountainous regions is dramatically expressed in the spatial distribution of glaciers and snowcover. Monitoring existing alpine glaciers and snow extent provides insight into the present mountain climate system and how it is changing, while mapping the positions of former glaciers as recorded in landforms such as cirques and moraines provide a record of the large past climate change associated with the last glacial maximum. The Andes are an ideal mountain range in which to study the response of snow and ice to past and present climate change. Their expansive latitudinal extent offers the opportunity to study glaciers in diverse climate settings from the tropical glaciers of Peru and Bolivia to the ice caps and tide-water glaciers of sub-polar Patagonia. SAR has advantages over traditional passive remote sensing instruments for monitoring present snow and ice and differentiating moraine relative ages. The cloud penetrating ability of SAR is indispensable for perennially cloud covered mountains. Snow and ice facies can be distinguished from SAR's response to surface roughness, liquid water content and grain size distribution. The combination of SAR with a coregestered high-resolution DEM (TOPSAR) provides a promising tool for measuring glacier change in three dimensions, thus allowing ice volume change to be measured directly. The change in moraine surface roughness over time enables SAR to differentiate older from younger moraines. Polarimetric SAR data have been used to distinguish snow and ice facies and relatively date moraines. However, both algorithms are still experimental and require ground truth verification. We plan to extend the SAR classification of snow and ice facies and moraine age beyond the ground truth sites to throughout the Cordillera Real to provide a regional view of past and present snow and ice. The high resolution DEM will enhance the SAR moraine dating technique by discriminating relative ages based on moraine slope degradation.

Forster, Richard R.↗