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At least 775 records · Page 43

Dataset describing two reference models for full-spectral lighting and daylight simulations together with implementations for two software systems

A dataset of two spectral lighting simulation reference models - one office and one factory hall - is presented. It aims to demonstrate and support full-spectral daylight and electric lighting simulations and facilitate evaluation of non-visual effects of light. The dataset includes Rhino CAD geometry, comprehensive spectral material and light source data and window system BSDF data. Example implementations in the two software tools, Radiance and OWL, enable reproducible workflows and support adoption in other software. The dataset is openly available on Zenodo. The office model reproduces Room 518 at the University of Innsbruck, including a west-facing façade and interior furnishings. The factory hall model follows the proposed geometry in the European standard 15193 for building energy performance. Interior reflectances in the office were measured in-situ using a handheld spectrometer. Exterior spectra and factory hall materials matching specified reflectances were obtained from an online spectral materials database. Glazing transmittance was derived from IGDB data using LBNL Optics/WINDOW. BSDFs for venetian blinds at various tilt angles, and for a diffusing pane adapted from the Complex Glazing Database, were generated in WINDOW. Luminaires in both models are specified with photometric files (Eulumdat/IES) and lamp spectra (Fluorescent 840, 4000 K LED). The provided example implementations (Radiance, OWL) include prepared input data and scripts to run first spectral simulations; example results are also included. The dataset is prepared to support reuse by researchers, designers and software developers for method validation, software engineering and comparison, and development of spectral metrics and controls.

Geisler-Moroder, David↗

Consensus on the key characteristics of endocrine-disrupting chemicals as a basis for hazard identification

Endocrine-disrupting chemicals (EDCs) are exogenous chemicals that interfere with hormone action, thereby increasing the risk of adverse health outcomes, including cancer, reproductive impairment, cognitive deficits and obesity. A complex literature of mechanistic studies provides evidence on the hazards of EDC exposure, yet there is no widely accepted systematic method to integrate these data to help identify EDC hazards. Inspired by work to improve hazard identification of carcinogens using key characteristics (KCs), we have developed ten KCs of EDCs based on our knowledge of hormone actions and EDC effects. In this Expert Consensus Statement, we describe the logic by which these KCs are identified and the assays that could be used to assess several of these KCs. We reflect on how these ten KCs can be used to identify, organize and utilize mechanistic data when evaluating chemicals as EDCs, and we use diethylstilbestrol, bisphenol A and perchlorate as examples to illustrate this approach.

60 APPLIED LIFE SCIENCES↗

Origin of 182 W Anomalies in Ocean Island Basalts

Ocean island basalts (OIB) show variable 182 W deficits that have been attributed to either early differentiation of the mantle or core-mantle interaction. However, 182 W variations may also reflect nucleosynthetic isotope heterogeneity inherited from Earth's building material, which would be evident from correlated 182 W and 183 W anomalies. Some datasets for OIB indeed show hints for such correlated variations, meaning that a nucleosynthetic origin of W isotope anomalies in OIB cannot be excluded. We report high-precision W isotope data for OIB from Samoa and Hawaii, which confirm previously reported 182 W deficits for these samples, but also demonstrate that none of these samples have resolvable 183 W anomalies. These data therefore rule out a nucleosynthetic origin of the 182 W deficits in OIB, which most likely reflect the entrainment of either core material or an overabundance of late-accreted materials within OIB mantle sources. If these processes occurred over Earth's history, they may have also been responsible for shifting the 182 W composition of the bulk mantle to its modern-day value. We also report Mo isotope data for some Hawaiian OIB, which reveal no resolved nucleosynthetic Mo isotopic anomalies. This is consistent with inheritance of 182 W deficits in OIB from the addition of either core or late-accreted material, but only if these materials have a non-carbonaceous (NC) meteorite-like heritage. As such, these data rule out significant contributions of carbonaceous chondrite (CC)-like materials to either Earth's core or late accretion.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

SPRUCE Hyperspectral Remote Sensing of Vegetation Communities in SPRUCE Experimental Plots, 2016

This dataset consists of reflectance observations from hyperspectral remote sensing of the vegetation communities from the Spruce and Peatland Responses Under Changing Environments (SPRUCE) experimental site within the Marcell Experimental Forest in northern Minnesota, USA. Observations were collected in SPRUCE experimental study plots located in the S1-Bog. Community vegetation plots in ten chambered treatment plots (6, 19, 11, 20, 4, 13, 8, 16, 10, 17) and 3 unchambered ambient plots (7, 14, 21) were scanned. Spectral data were collected on 22 September 2016 (2016-09-22) under clear sky conditions beginning at 1:00 p.m. local time (Central Standard Time). Although it was past peak growing season, senescence had only just begun at the site, and experimentally warmed plots were still near peak growing conditions. Data collection was performed using a PP Systems UniSpec-DC spectroradiometer that detected incoming and reflected solar radiation in 3–4 nm bandwidths between 310 and 1100 nm. The fiber optic cable on the Unispec was fitted with a field of view (FOV) restrictor that limited the FOV to approximately 15°. The instrument foreoptic was leveled at 1 m above the ground capturing an area of approximately 35 cm in diameter, or 0.1 m2. White reference scans were performed between each treatment. Bands at the beginning and end of the spectrum were eliminated due to noise, resulting in a reported data range of 400-1000 nm. These data can help characterize boreal peatland plant composition and species diversity and their responses to elevated temperatures and carbon dioxide concentrations. These observations were used in analyses in McPartland et al (2019). This dataset contains 4 data files in comma-separate values (*.csv) format. Additional metadata are provided: four data dictionaries and a file-level metadata file in comma-separate values (.csv) format and a user guide in PDF (*.pdf) format.

54 ENVIRONMENTAL SCIENCES↗

Initial-Boundary Value Problem for the Nonstationary Radiative Transfer Equation with Diffuse Reflection and Refraction Conditions

We consider the initial-boundary value problem for the nonstationary radiative transfer equation in a system of semitransparent bodies with the conditions of diffuse reflection and refraction of radiation. We establish the unique solvability of the problem with boundary and initial data in the complete scale of Lebesgue spaces. We obtain estimates for solutions.

42 ENGINEERING↗

Reflectance determination of optical spectral emissivity of metal surfaces at ambient conditions

Optical pyrometry requires knowledge of both spectral radiance and spectral emissivity to accurately measure temperature. No reliable compendium of spectral emissivity data currently exists for common metals in the optical and near-infrared spectral regions where pyrometry is typically performed. In this paper, we measure the spectral reflectivity of numerous common metals, with known surface finishes, between 400 and 1100 nm. The measurements are carried out under ambient conditions, near 300 K at an atmospheric pressure of ~0.78 bar. We then calculate the emissivity as a function of the wavelength for each sample. We define and use the illumination and collection geometries most practical for applying these measurements to radiometric thermometry. We also examine the effect of surface finish upon the relative spectral emissivity of a given material and find qualitative guidelines for predicting the increase in emissivity with increasing surface roughness. Finally, these measurements can both improve the accuracy and precision of optical pyrometry and provide the necessary reference value for converting emerging diagnostic measurements of relative spectral emissivity under extreme dynamic conditions into absolute dynamic spectral emissivity.

36 MATERIALS SCIENCE↗

Recovering Interstellar Gas Properties with Hi Spectral Lines: A Comparison between Synthetic Spectra and 21-SPONGE

We analyze synthetic neutral hydrogen (H i) absorption and emission spectral lines from a high-resolution, three-dimensional hydrodynamical simulation to quantify how well observational methods recover the physical properties of interstellar gas. We present a new method for uniformly decomposing H i spectral lines and estimating the properties of associated gas using the Autonomous Gaussian Decomposition (AGD) algorithm. We find that H i spectral lines recover physical structures in the simulation with excellent completeness at high Galactic latitude, and this completeness declines with decreasing latitude due to strong velocity-blending of spectral lines. The temperature and column density inferred from our decomposition and radiative transfer method agree with the simulated values within a factor of <2 for the majority of gas structures. We next compare synthetic spectra with observations from the 21-SPONGE survey at the Karl G. Jansky Very Large Array using AGD. We find more components per line of sight in 21-SPONGE than in synthetic spectra, which reflects insufficient simulated gas scale heights and the limitations of local box simulations. In addition, we find a significant population of low-optical depth, broad absorption components in the synthetic data which are not seen in 21-SPONGE. This population is not obvious in integrated or per-channel diagnostics, and reflects the benefit of studying velocity-resolved components. The discrepant components correspond to the highest spin temperatures (1000<T{sub s}<4000 K), which are not seen in 21-SPONGE despite sufficient observational sensitivity. We demonstrate that our analysis method is a powerful tool for diagnosing neutral interstellar medium conditions, and future work is needed to improve observational statistics and implementation of simulated physics.

79 ASTRONOMY AND ASTROPHYSICS↗

Visible to near-infrared spectral reflectance along the NGEE-Arctic tram transect, Utqiagvik (Barrow), Alaska, 2015-2018

Canopy spectral reflectance collected measured in 2015-2018 along the NGEE-Arctic tram located on the Barrow Environmental Observatory (BEO), Barrow, Alaska. Measurements were made using a PP-Systems UniSpec-DC spectrometer mounted on an automatically operated instrument cart. Spectra were collected at 137 stop points at 0.5 m intervals along the tram transect. Transect runs were collected daily, or multiple times per day, from April or May through to August or September each year. Downwelling radiance was measured using a 2 meter fiber optic cable connected to a cosine diffuser. Upwelling (i.e. reflected) radiance was measured using a 2 meter cable connected to a 12 degree field-of-view (FOV) lens. Canopy reflectance was calculated using the ratio of upwelling to downwelling radiance measured over a 99.99% reflectance Spectralon standard measured at the start of each measurement set. Unprocessed spectral data are presented in .spu files. Metadata are provided in csv files, and the instrument manual (pdf). The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 15-year research effort (2012-2027) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Full spectrum (350-2500 nm) canopy spectral reflectance, Seward Peninsula, Alaska, 2018

Full-range (350-2500 nm) canopy reflectance spectra of various Arctic tundra ecosystem endmembers, including canopy-scale species endmember spectra, plot-scale spectra, and transect spectra as well as non-vegetated surface (NVS) spectra. The datasets were collected at the three core NGEE-Arctic watersheds, Kougarok, Teller, and Council, as well as the supplemental Kougarok Mile 80 site within the larger Seward Peninsula, Alaska region. The data were collected in July 2018 using a full-range Spectra Vista Corporation (SVC) HR-1024i spectroradiometer. Canopy-scale reflectance was collected with an 8-degree field-of-view (FOV) foreoptic lens. All spectral measurements were collected as calibrated surface radiance and converted to surface reflectance using a 99.99% reflective Spectralon white reference standard. For those canopy spectra collected with associated functional trait data, the FOV of the instrument was positioned to include the same leaves harvested for functional trait measurements, including leaf mass per area (LMA) and foliar carbon and nitrogen content (see associated dataset). Species included in the spectra and functional trait dataset include Alnus viridis, Betula nana, Betula glandulosa, Arctous alpina, and Salix pulchra. This data package includes 35 files in a variety of formats including processed canopy spectra (*.csv), processed dGPS locations (*.csv and *.kmz), digital photographs of spectral targets (*.jpg) and raw data from spectroradiometer and dGPS instruments (compressed as tar.gz). Metadata files include data descriptions (_dd.csv) for tabular data and a key to species symbols used in data files. All included files are listed and described in NGA208_flmd.csv.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Role of f Electrons in the Optical and Photoelectrochemical Behavior of Ca(La 1– x Ce x ) 2 S 4 (0 ≤ x ≤ 1)

This study focuses on a solid solution series, Ca(La 1– x Ce x ) 2 S 4 (0 ≤ x ≤ 1), where the f electron density is absent in CaLa 2 S 4 and is progressively increased until it is maximized in CaCe 2 S 4 . Correspondingly, these samples, synthesized by a sealed ampule method, showed progressive variations in color ranging from gray for CaLa 2 S 4 to orange-red for CaCe 2 S 4 . The crystal structural nuances of both the end members and three solid solutions with $x$ = 0.25, 0.50, and 0.75 were established with the complementary use of synchrotron X-ray diffraction and neutron scattering. Interestingly, these data were consistent with a two-phase composition centered around each nominal solid solution stoichiometry. Optical characterization via diffuse reflectance spectroscopy and Tauc analyses showed a shrinking of the energy band gap (from the UV to vis range) when Ce was progressively introduced into the host CaLa 2 S 4 structure. Overall, these data were in concert with electronic band structure calculations, using density functional theory, which showed the progressive formation of an intermediate f band when Ce was introduced intro the structure. Photoelectrochemical measurements in an aqueous redox electrolyte, as well as surface photovoltage and Kelvin probe measurements, revealed all samples to be n-type semiconductors. The valence and conduction band edge positions of the end members and the three solid solutions could be mapped, on both the redox and vacuum reference energy scales, by combining these measurements with the optical data.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Electron Density Measurements Using USPR (Final Scientific/Technical Report)

UC Davis has fabricated an ultrashort pulse reflectometer (USPR) diagnostic instrument for electron density profile measurements on compact, short duration, magnetically-confined fusion-energy concept devices such as spheromaks and FRCs. The USPR system transmits extremely short duration (~few nsec) chirped waveforms that together span 29 to 75 GHz. These chirped waveforms illuminate and reflect from the target plasma, with each frequency component reflecting from a different density layer (higher frequencies probe deeper into the plasma before reflecting). The reflected waveforms are split into roughly 42 different frequencies; time-of-flight (TOF) measurements made at each frequency with high resolution (~25 psec measurement resolution which corresponds to ~5 mm). These TOF data may then be inverted via software to generate electron density profiles with high time resolution (~10 μsec). At the heart of the system is a field programmable gate array (FPGA) based controller which collects and processes all of the USPR data in addition to generating all of the control signals required for maximum flexibility. The FPGA controller has the software flexibility to be easily reconfigured for different plasma devices, and the entire system sufficiently compact to be easily and quickly transported between devices. A high speed impulse generator was transformed into a set of three ultrashort pulse transmitter chirps using a combination of dispersive waveguide, frequency doublers and high-pass filters. A mm-wave controller was fabricated to sequentially switch between the three chirps, directing the chirps one-by-one to three different mm-wave assemblies spanning 29-75 GHz. Each mm-wave assembly consists of a high power active multiplier chain which converts the transmitter chirp to higher frequencies, and a broadband mixer which downconverts the reflected waveform to the 2-18 GHz range of the UPSR receiver. The 16-channel receiver (shared by all 3 mm-wave assemblies) was fabricated employing custom TOF modules capable of operating at a high 1 MHz sampling rate. Laboratory testing of the full system revealed the presence of unwanted harmonics from the multiplication process, with interference observed in the downconverted reflections at selected frequency channels that could not be completely filtered out. Additional interference effects arising from internal reflections within the mm-wave assemblies were minimized using a high-speed switch which served to “gate out” much of these reflections. The USPR diagnostic was transported and installed onto the HIT-SIU plasma device, becoming operational on 11/08/2022. Although designed to span 3 distinct mm-wave bands, the HIT-SIU plasmas at this time were sufficiently low density such that only the lowest of the three bands was likely to have strong plasma reflections. The system was then set to operate on only the lowest band (assembly #1), with data collected every 1 μsec rather than 3 μsec which would have been the case when cycling through all three bands. Connected to HIT-SIU, time-varying plasma reflections were observed on 9 of 16 possible frequency channels. Close examination of the data collected revealed issues previously unobserved in laboratory testing, associated with (a) reflections from the small aperture horns required for operation within the HIT-SIU device, and (b) a dependence of the recorded TOF with the threshold voltage of a given channel. Plans were made to address each of these issues before undertaking any future campaigns.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

NCSP IER 422 CED-3b Documentation

A Subcritical Copper-Reflected α-phase Plutonium (SCRαP) integral benchmark experiment has been designed and measured. In this experiment, multiplication is approximated using correlated neutron data from a detector system consisting of 3He tubes inside high density polyethylene (HDPE). Measurements were performed on various subcritical experimental configurations consisting of a weapons-grade plutonium sphere surrounded by different Cu thicknesses. In addition to the proposed base experimental configurations with Cu, additional configurations were performed with the plutonium ball nested in various thicknesses of interleaved HDPE spherical shells mixed in with the Cu shells. The HDPE is intended to provide fast neutron moderation and reflection, resulting in additional measurements with differing multiplication, spectra, and nuclear data sensitivity.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A Model on Heat Signal of Crystal Detector at Low Temperature

We present a model to calculate heat signal shapes from low-temperature bolometer attached to a crystal. This model is based on the elementary acoustic wave theory at low temperature and has been developed using modern Monte Carlo techniques. Physical processes in phonon propagation, such as transmission, scattering and reflection are considered. Using our model, the calculated time dependence of signal agrees with real experimental data. This model has applications in low-temperature rare event particle detectors for dark matter and neutrinos.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Micro Rain Radar Pro Data at the Argonne Testbed for Multiscale Observational Science obtained during the CROCUS Urban Integrated Field Laboratory

The Micro Rain Radar Pro (MRR-PRO) is a vertically pointing Ka-band Doppler radar designed to capture the fine-scale structure and evolution of precipitation. By recording the full Doppler spectrum at high temporal and spatial resolution, the MRR-PRO provides insight into both hydrometeor fall velocities and precipitation microphysics. From these spectra, key moments—reflectivity, mean Doppler velocity, spectral width, and rainfall rate—are derived and stored alongside the raw spectral data in CF/Radial 1.4-compliant files. Deployed at the Argonne Testbed for Multiscale Observational Studies (ATMOS) since November 2024, the MRR-PRO delivers vertical profiles at 70 m range resolution extending up to 4.5 km above ground level. These observations enable detailed analyses of precipitation type, intensity, and vertical structure, supporting process-level studies of cloud and precipitation dynamics in diverse weather regimes.

54 ENVIRONMENTAL SCIENCES↗

Depot-Based Vehicle Data for National Analysis of Medium- and Heavy-Duty Electric Vehicle Charging

Medium- and heavy-duty vehicles (MHDVs) are a major source of greenhouse gases and local criteria air pollutants. Electrifying MHDVs may reduce these harmful emissions, which disproportionately impact disadvantaged communities. Due to their relatively high per-vehicle energy needs, consistent fleet operations, and frequent colocation of multiple vehicles at depots, MHDVs may have more spatially and temporally concentrated charging demands than light-duty passenger electric vehicles. That charging concentration means their electrification may require careful advance planning and coordination to manage potential impacts to the electrical grid via charge management or infrastructure upgrades. However, MHDV duty cycles and parking schedules are highly variable across vocations of operation, and there is a shortage of nationally representative, vocationally diverse public data describing typical MHDV operations. This report summarizes the methodology - designed with national representativeness in mind - used to create a new set of data describing typical daily driving distances, dwell durations, and normalized electric vehicle depot charging load curves for MHDVs. The dataset reflects the subset of MHDV operating patterns that may originate from a consistent depot each day and rely on the same depot for charging. In addition to trucks with depot-centric vocational patterns, the data describes operations of transit buses and school buses, each with a depot-centric focus. The dataset is available to the public and suitable for national analysis. It can inform research, infrastructure planning, and policymaking regarding the electrification of MHDVs.

33 ADVANCED PROPULSION SYSTEMS↗

Analytics-at-scale of Sensor Data for Digital Monitoring in Nuclear Plants (3 rd Annual Report)

Nuclear power plants collect and store large volumes of heterogeneous data from various components and systems. With recent advances in machine learning (ML) techniques, these data can be leveraged to develop diagnostic and short-term forecasting models to better predict future equipment condition. Maintenance operations can then be planned in advance whenever degraded performance is predicted, thus resulting in fewer unplanned outages and the optimization of maintenance activities. This enables lower maintenance costs and improves the overall economics of nuclear power. This report primarily focuses on developing a short-term forecasting process that leverages a feature selection process to distill large volumes of heterogeneous data and predict specific equipment parameters. A variety of feature selection methods, including Shapley Additive Explanations (SHAP) and variance inflation factor (VIF), were used to select the optimal features as inputs for three ML methods: long short-term memory (LSTM) networks, support vector regression (SVR), and random forest (RF). Each combination of model and input features was used to predict a pump bearing temperature both 1 and 24 hours in advance, based on actual plant system data. The optimal inputs for the LSTM and SVR were selected using the SHAP values, while the optimal input for the RF consisted solely of the response variable itself. Each model produced similar 1-hour-ahead predictions, with root mean square errors (RMSEs) of roughly 0.006. For the 24-hour-ahead predictions, differences could be seen between LSTM, SVR, and RF, as reflected by model performances of 0.036 ± 0.014, 0.0026 ± 0, and 0.063 ± 0.004 RMSE, respectively. As big data and continuous online monitoring become more widely available, the proposed feature selection process can be used for many applications beyond the prediction of process parameters within nuclear infrastructure. This report summarizes the Fiscal Year 2021 research progress encompassing the (1) data cleaning and feature selection necessary for ML applications; (2) development of short-term forecasting models to predict future plant process parameters for both single and multiple time steps ahead; and (3) validation of the feature selection methods and short-term forecasting models given new data from different systems.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Development of Short-Term Forecasting Models Using Plant Asset Data and Feature Selection

Nuclear power plants collect and store large volumes of heterogeneous data from various components and systems. With recent advances in machine learning (ML) techniques, these data can be leveraged to develop diagnostic and short-term forecasting models to better predict future equipment condition. Maintenance operations can then be planned in advance whenever degraded performance is predicted, thus resulting in fewer unplanned outages and the optimization of maintenance activities. This enables lower maintenance costs and improves the overall economics of nuclear power. This paper focuses on developing a short-term forecasting process that leverages a feature selection process to distill large volumes of heterogeneous data and predict specific equipment parameters. A variety of feature selection methods, including Shapley Additive Explanations (SHAP) and variance inflation factor (VIF), were used to select the optimal features as inputs for three ML methods: long short-term memory (LSTM) networks, support vector regression (SVR), and random forest (RF). Each combination of model and input features was used to predict a pump bearing temperature both 1 and 24 hours in advance, based on actual plant system data. The optimal inputs for the LSTM and SVR were selected using the SHAP values, while the optimal input for the RF consisted solely of the response variable itself. Each model produced similar 1-hour-ahead predictions, with root mean square errors (RMSEs) of roughly 0.006. For the 24-hour-ahead predictions, differences could be seen between LSTM, SVR, and RF, as reflected by model performances of 0.036 +- 0.014, 0.0026 +- 0, and 0.063 +- 0.004 RMSE, respectively. As big data and continuous online monitoring become more widely available, the proposed feature selection process can be used for many applications beyond the prediction of process parameters within nuclear infrastructure.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples

The accurate identification of SARS-CoV-2 (SC2) variants and estimation of their abundance in mixed population samples (e.g., air or wastewater) is imperative for successful surveillance of community level trends. Assessing the performance of SC2 variant composition estimators (VCEs) should improve our confidence in public health decision making. Here, we introduce a linear regression based VCE and compare its performance to four other VCEs: two re-purposed DNA sequence read classifiers (Kallisto and Kraken2), a maximum-likelihood based method (Lineage deComposition for Sars-Cov-2 pooled samples (LCS)), and a regression based method (Freyja). We simulated DNA sequence datasets of known variant composition from both Illumina and Oxford Nanopore Technologies (ONT) platforms and assessed the performance of each VCE. We also evaluated VCEs performance using publicly available empirical wastewater samples collected for SC2 surveillance efforts. Bioinformatic analyses were performed with a custom NextFlow workflow (C-WAP, CFSAN Wastewater Analysis Pipeline). Relative root mean squared error (RRMSE) was used as a measure of performance with respect to the known abundance and concordance correlation coefficient (CCC) was used to measure agreement between pairs of estimators. Based on our results from simulated data, Kallisto was the most accurate estimator as it had the lowest RRMSE, followed by Freyja. Kallisto and Freyja had the most similar predictions, reflected by the highest CCC metrics. We also found that accuracy was platform and amplicon panel dependent. For example, the accuracy of Freyja was significantly higher with Illumina data compared to ONT data; performance of Kallisto was best with ARTICv4. However, when analyzing empirical data there was poor agreement among methods and variations in the number of variants detected (e.g., Freyja ARTICv4 had a mean of 2.2 variants while Kallisto ARTICv4 had a mean of 10.1 variants). This work provides an understanding of the differences in performance of a number of VCEs and how accurate they are in capturing the relative abundance of SC2 variants within a mixed sample (e.g., wastewater). Such information should help officials gauge the confidence they can have in such data for informing public health decisions.

60 APPLIED LIFE SCIENCES↗