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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 793 records · Page 44
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DOE OSTI2024

Exabiome: Advancing Microbial Science through Exascale Computing

The Exabiome project seeks to improve the understanding of microbiomes through the development of methods for accelerating metagenomic science using exascale computing. This article gives an overview of scientific impact of the three components of the project: metagenome assembly, protein family detection, and comparative analysis of metagenomes. Exabiome developed MetaHipMer, the only metagenome assembler capable of scaling to full exascale systems. MetaHipMer has enabled ground-breaking assemblies on the Frontier supercomputer, with many scientific benefits, such as the discovery of rare species and viral genomes. To investigate protein families, Exabiome developed two exascale tools, PASTIS and HipMCL. Together, these can utilize exascale resources to understand the functional diversity of billions of dark matter proteins and novel protein families. For comparative analysis, Exabiome developed kmerprof, a tool that can be used to compare huge metagenomes for many different scientific purposes, for example, grouping human microbiomes according to body location.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

Application of a bayesian belief network model to reliability assessment of nuclear safety-related software - 207

As the instrumentation and control (I and C) systems in nuclear power plants (NPPs) have been replaced with digital-based systems, the need to incorporate software failures into NPP probabilistic risk assessments has arisen. In order to assess the probability of software failure on demand, a Bayesian belief network (BBN) model was developed which estimates the number of defects and the resulting probability of software failure on demand in nuclear safety-related software. To assess the feasibility of the BBN framework, the BBN model was applied to the prototype Integrated Digital Protection System-Reactor Protection System (IDiPS-RPS) to estimate the number of remaining faults and the software failure probability of a target software. The developmental- and V and V-activities carried out during the IDiPS-RPS development process were evaluated based on the well-defined checklist derived by the V and V team and were estimated based on expert elicitation. In addition, the attribute evaluations and the number of FPs of the target software is provided as the inputs for the BBN model. The application results showed the feasibility of using BBNs for quantifying software failure probabilities and several insights were gained from the applications of the BBN model. The proposed BBN framework can be applied to estimate the software failure probability for other safety-related NPP software and provide an insight on modeling the software development process that involves iterations between different development phases. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2025

RANGE: A robust adaptive nature-inspired global explorer of potential energy surfaces

With the growing demand for realistic representations of chemical structures and the advent of exascale computing, the intelligent sampling of potential energy surfaces and efficient identification of global minima have become more essential but also more feasible. Building on prior studies demonstrating the efficiency of the Artificial Bee Colony (ABC) swarm intelligence algorithm, we report a hybrid metaheuristic framework that integrates the adaptive exploration capabilities of ABC coupled with the exploitation strengths of genetic algorithms (GA) in a scalable, Python-based implementation. The resulting tool, RANGE (Robust Adaptive Nature-inspired Global Explorer), provides seamless interfaces to multiple potential energy evaluators, either directly or via widely used Python libraries, and is designed for high-performance computing environments. We describe the implementation details of RANGE and evaluate its performance, relative to ABC- or GA-alone based algorithms, on a variety of chemical systems, including molecular clusters and heterogeneous surfaces. In conclusion, our results demonstrate RANGE’s efficiency, robustness, and broad applicability in addressing challenging global optimization problems in computational chemistry and materials science.

Algorithms and data structure↗
DOE OSTI2021

Hybrid (PDE+ML) models in the context of land ice modeling

Focal Area(s): Primary focal areas are: predictive modeling through the use of AI-derived model components; advanced methods including network design/optimization/deep learning. Science Challenge: The atmospheric, ocean and ice dynamics components of the Energy Exascale Earth System Model (E3SM) are governed by Partial Differential Equations (PDEs) and significant efforts have been made during the last decades to develop such computational models. Here we propose to fundamentally improve these PDE-based codes by enhancing them with Machine Learning (ML) sub-models for complex, poorly understood physical processes in the context of ice sheet modeling. We propose to train these models with a novel approach that allows the assimilation of the different sources of data available (direct/indirect observations and possibly simulation data), improving on existing simplified models. We also highlight computational challenges originating from the coexistence of PDE-based and ML-based models.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2016

Anisotropic storage medium development in a full-scale, sodium alanate-based, hydrogen storage system

Deuterium desorption in an automotive-scale hydrogen storage tube was studied in-situ using neutron diffraction. Gradients in the concentration of the various alanate phases were observed along the length of the tube but no significant radial anisotropy was present. In addition, neutron radiography and computed tomography showed large scale cracks and density fluctuations, confirming the presence of these structures in an undisturbed storage system. These results demonstrate that large scale storage structures are not uniform even after many absorption/desorption cycles and that movement of gaseous hydrogen cannot be properly modeled by a simple porous bed model. In addition, the evidence indicates that there is slow transformation of species at one end of the tube indicating loss of catalyst functionality. These observations explain the unusually fast movement of hydrogen in a full scale system and shows that loss of capacity is not occurring uniformly in this type of hydrogen-storage system.

08 HYDROGEN↗
DOE OSTI2018

Effective anisotropy due to the surface of magnetic nanoparticles

Analytical solution has been discovered for the second-order effective anisotropy of magnetic nanoparticles of a cubic shape due to the surface anisotropy (SA) of the Néel type. Similarly to the spherical particles, for the simple cubic lattice the grand-diagonal directions (±1,±1,±1) are favored by the effective cubic anisotropy but the effect is twice as strong. Uniaxial core anisotropy and applied magnetic field cause screening of perturbations from the surface at the distance of the domain-wall width and reduce the effect of SA near the energy minima. Yet, screening disappears near the uniaxial energy barrier, and the uniform barrier state of larger particles may become unstable. For these effects the analytical solution is obtained as well, and the limits of the additive formula with the uniaxial and effective cubic anisotropies for the particle are established. Thermally-activated magnetization-switching rates have been computed by the pulse-noise technique for the stochastic Landau-Lifshitz equation for a system of spins.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2017

Eigenvector centrality for geometric and topological characterization of porous media

Solving flow and transport through complex geometries such as porous media is computationally difficult. Such calculations usually involve the solution of a system of discretized differential equations, which could lead to extreme computational cost depending on the size of the domain and the accuracy of the model. Geometric simplifications like pore-networks, where the pores are represented by nodes and pore throats by edges connecting pores, have been proposed. These models, despite their ability to preserve the connectivity of the medium, have difficulties in capturing preferential paths (high velocity) and stagnation zones (low velocity) as they do not consider the specific relations between nodes. Nonetheless, network theory approaches, where a complex network is a graph, can help to simplify and better understand fluid dynamics and transport in porous media. Here we present a novel method to address these issues based on eigenvector centrality, which has been corrected to overcome the centralization problem, and modified to introduce a bias in the centrality distribution along a particular direction to address the flow and transport anisotropy in porous media. We compare the model predictions with millifluidic transport experiments, which shows that, albeit simple, this technique is computationally efficient and has potential for predicting preferential paths and stagnation zones for flow and transport in porous media. We propose to use eigenvector centrality probability distribution to compute entropy as an indicator of the ‘mixing capacity’ of the system.

58 GEOSCIENCES↗
DOE OSTI2024

Heterostructural Alloy Phase Diagram for (Cd 1-x Zn x ) 3 As 2

Alloying the topological semimetal Cd 3 As 2 with Zn 3 As 2 provides a potential route for controlling the electronic properties. We predict the alloy phase diagram from first-principles calculations, considering that both end members have a crystal structure derived from the antifluorite lattice, but with different arrangements of the unoccupied cation sites. To overcome the limitations of the regular solution approximation and to include short-range order effects, we perform Monte Carlo simulations, parameterize the temperature dependence of the mixing enthalpy ΔH m , and perform thermodynamic integration of the free energy. The resulting phase diagram exhibits features that are unique to heterostructural alloy systems and provides computational predictions of solubility limits and composition ranges that are stable against spinodal decomposition.

36 MATERIALS SCIENCE↗
DOE OSTI2019

The role of machine learning in scientific workflows

Machine learning (ML) is being applied in a number of everyday contexts from image recognition, to natural language processing, to autonomous vehicles, to product recommendation. In the science realm, ML is being used for medical diagnosis, new materials development, smart agriculture, DNA classification, and many others. In this article, we describe the opportunities of using ML in the area of scientific workflow management. Scientific workflows are key to today’s computational science, enabling the definition and execution of complex applications in heterogeneous and often distributed environments. We describe the challenges of composing and executing scientific workflows and identify opportunities for applying ML techniques to meet these challenges by enhancing the current workflow management system capabilities. We foresee that as the ML field progresses, the automation provided by workflow management systems will greatly increase and result in significant improvements in scientific productivity.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2017

Quantum Machine Learning over Infinite Dimensions

Machine learning is a fascinating and exciting eld within computer science. Recently, this ex- citement has been transferred to the quantum information realm. Currently, all proposals for the quantum version of machine learning utilize the nite-dimensional substrate of discrete variables. Here we generalize quantum machine learning to the more complex, but still remarkably practi- cal, in nite-dimensional systems. We present the critical subroutines of quantum machine learning algorithms for an all-photonic continuous-variable quantum computer that achieve an exponential speedup compared to their equivalent classical counterparts. Finally, we also map out an experi- mental implementation which can be used as a blueprint for future photonic demonstrations.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2019

The Outer Rim Simulation: A Path to Many-core Supercomputers

Herein we describe the Outer Rim cosmological simulation, one of the largest high-resolution N-body simulations performed to date, aimed at promoting science to be carried out with large-scale structure surveys. The simulation covers a volume of (4.225 Gpc) 3 and evolves more than one trillion particles. It was executed on Mira, a BlueGene/Q system at the Argonne Leadership Computing Facility. We discuss some of the computational challenges posed by a system such as Mira, a many-core supercomputer, and how the simulation code, Hardware/Hybrid Accelerated Cosmology Code, has been designed to overcome these challenges. We have carried out a large range of analyses on the simulation data and we report on the results as well as the data products that have been generated. The full data set generated by the simulation totals more than 5 PB of data, making curation and handling of the data a large challenge in itself. The simulation results have been used to generate synthetic catalogs for large-scale structure surveys, including Dark Energy Spectroscopic Instrument and eBOSS, as well as experiments on the cosmic microwave background. A detailed catalog for the data challenges of the Large Synoptic Survey Telescope Dark Energy Science Collaboration has been created as well. We publicly release some of the Outer Rim halo catalogs, downsampled particle information, and lightcone data.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

sNebula, a network-based algorithm to predict binding between human leukocyte antigens and peptides

Understanding the binding between human leukocyte antigens (HLAs) and peptides is important to understand the functioning of the immune system. Since it is time-consuming and costly to measure the binding between large numbers of HLAs and peptides, computational methods including machine learning models and network approaches have been developed to predict HLA-peptide binding. However, there are several limitations for the existing methods. We developed a network-based algorithm called sNebula to address these limitations. We curated qualitative Class I HLA-peptide binding data and demonstrated the prediction performance of sNebula on this dataset using leave-one-out cross-validation and five-fold cross-validations. Furthermore, this algorithm can predict not only peptides of different lengths and different types of HLAs, but also the peptides or HLAs that have no existing binding data. We believe sNebula is an effective method to predict HLA-peptide binding and thus improve our understanding of the immune system.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2022

Quantum materials for energy-efficient neuromorphic computing: Opportunities and challenges

Neuromorphic computing approaches become increasingly important as we address future needs for efficiently processing massive amounts of data. The unique attributes of quantum materials can help address these needs by enabling new energy-efficient device concepts that implement neuromorphic ideas at the hardware level. In particular, strong correlations give rise to highly non-linear responses, such as conductive phase transitions that can be harnessed for short- and long-term plasticity. Similarly, magnetization dynamics are strongly non-linear and can be utilized for data classification. This Perspective discusses select examples of these approaches and provides an outlook on the current opportunities and challenges for assembling quantum-material-based devices for neuromorphic functionalities into larger emergent complex network systems.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Quantum Computing and Simulations for Energy-Related Applications

Quantum Information Science (QIS) is an emerging field that has the potential to cause revolutionary advances in many areas of science and engineering, and nations around the world are vying for dominance in the field. To support DOE urgent task to make sure the U.S. wins the quantum race, in Spring of 2019 NETL started to establish and maintain QIS competency by focusing on energy-related applications. After more than five years’ hard-working, NETL QUEST (quantum for energy systems & technologies) team has made great progress on quantum sensing and quantum computing for energy applications. Significant outcomes have been achieved. To report our research progress and to propose new research directions, in this presentation at the American Physical Society (APS) annual meeting, I'm highlighting the progress of QUEST team on quantum computing for energy-related applications.

quantum computing↗
DOE OSTI2017

Toward Managing HPC Burst Buffers Effectively: Draining Strategy to Regulate Bursty I/O Behavior

HPC (high-performance computing) applications usually show bursty I/O behaviors. In order to expedite the applications, permanent storage systems are usually provisioned to serve such I/O bursts. Approaching the era of exascale computing, non-volatile RAM is introduced as burst buffers, to absorb the bursty bulk data and relax the I/O provisioning requirement of the permanent storage systems. However, without judiciously draining the burst buffers, I/O bursts are passed down to the underlying storage systems, which causes severe I/O contention issues.In order to minimize the I/O provisioning requirement and resolve the issues caused by I/O bursts, we propose a proactive draining scheme to manage the draining process of distributed node-local burst buffers. In addition, we develop an I/O provisioning model to predict the minimized I/O provisioning requirement for permanent storage systems. Evaluation results show that applying the proactive draining scheme largely relaxes the I/O provisioning requirement while preserving the I/O performance of underlying storage systems.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2015

Flexible HPC Environments [Poster]

New computational paradigms require new tools and environments. A new class of data-analysis tools are available for scientists. These tools do not integrate well with traditional HPC resource management systems. Differing and often conflicting requirements exist. Some fields require validated environments including high energy physics and cosmology. By adopting cloud technologies in an HPC environment we are merging the compute-intensive and data-intensive worlds in one converged system. HPC Systems will support a Larger Set of Technologies. Scientists will be able to leverage the latest tools on HPC resources at previously unavailable scales. User-defined environments will enable rapid experimentation and adoption of emerging tools. HPC systems will support a consolidated workflow from simulation to analysis and discovery. HPC systems will have increased utility to a broader set of users.

97 MATHEMATICS AND COMPUTING↗