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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 793 records · Page 44
All sourcesNASA NTRSDOE OSTI
DOE OSTI2011

Hypervelocity Capture of Meteoritic Particles in Nonsilica Aerogels

The Stardust mission captured particles from the comet 81P/Wild 2 in gradient density silica aerogel and returned the collected samples to earth in 2006. The analyses of these particles have revealed several new insights into the formation of our solar system. However, since the aerogel used as the capture material was silica, the elemental analyses of the silica-rich particles were made more complicated in certain ways due to the mixing of the silicon of the particles and that of the aerogel. By using a nonsilica aerogel, future elemental analyses of silica-rich particles captured in aerogel could be made more straightforward. Resorcinol/formaldehyde (RF), alumina, and zirconia aerogels were impact tested with meteoritic fragments and the captured fragments were mapped with synchrotron-based X-ray microprobe (XRM) and the particles were analyzed with X-ray fluorescence (XRF). The resorcinol/formaldehyde aerogel proved to be the best capture material, in that it could be keystoned and XRF could be used to locate and analyze particles that were less than 10 {micro}m.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Hf‐W chronology of a macrochondrule from the L5/6 chondrite Northwest Africa 8192

Abstract A large, igneous‐textured, and 2 cm‐sized spherical object from the L5/6 chondrite NWA 8192 was investigated for its chemical composition, petrography, O isotopic composition, and Hf‐W chronology. The petrography and chemical data indicate that this object closely resembles commonly found chondrules in ordinary chondrites and is therefore classified as a “macrochondrule.* As a result of metal loss during its formation, the macrochondrule exhibits elevated Hf/W, which makes it possible to date this object using the short‐lived 182 Hf‐ 182 W system. The Hf‐W data provide a two‐stage model age for metal–silicate fractionation of 1.4 ± 0.6 Ma after Ca‐Al‐rich inclusion (CAI) formation, indicating that the macrochondrule formed coevally to normal‐sized chondrules from ordinary chondrites. By contrast, Hf‐W data for metal from the host chondrite yield a younger model age of ~11 Ma after CAIs. This younger age agrees with Hf‐W ages of other type 5–6 ordinary chondrites, and corresponds to the time of cooling below the Hf‐W closure temperature during thermal metamorphism on the parent body. The Hf‐W model age difference between the macrochondrule and the host metal demonstrates that the Hf‐W systematics of the bulk macrochondrule were not disturbed during thermal metamorphism, and therefore, that the formation age of such objects can still be determined even in strongly metamorphosed samples. Collectively, this study illustrates that chondrule formation was not limited to mm‐size objects, implying that the rarity of macrochondrules reflects either that this process was very inefficient, that subsequent nebular size‐sorting decimated large chondrules, or that large precursors were rare.

58 GEOSCIENCES↗
DOE OSTI2020

Community structure – Ecosystem function relationships in the Congo Basin methane cycle depend on the physiological scale of function

Belowground ecosystem processes can be highly variable and difficult to predict using microbial community data. Here, we argue that this stems from at least three issues: (a) complex covariance structure of samples (with environmental conditions or spatial proximity) can make distinguishing biotic drivers a challenge; (b) communities can control ecosystem processes through multiple mechanisms, making the identification of these controls a challenge; and (c) ecosystem function assessments can be broad in physiological scale, encapsulating multiple processes with unique microbially mediated controls. In this work, we test these assertions using methane (CH 4 )-cycling processes in soil samples collected along a wetland-to-upland habitat gradient in the Congo Basin. We perform our measurements of function under controlled laboratory conditions and statistically control for environmental covariates to aid in identifying biotic drivers. We divide measurements of microbial communities into four attributes (abundance, activity, composition, and diversity) that represent different forms of community control. Lastly, our process measurements differ in physiological scale, including broader processes (gross methanogenesis and methanotrophy) that involve more mediating groups, to finer processes (hydrogenotrophic methanogenesis and high-affinity CH 4 oxidation) with fewer mediating groups. We observed that finer scale processes can be more readily predicted from microbial community structure than broader scale processes. In addition, the nature of those relationships differed, with broad processes limited by abundance while fine-scale processes were associated with diversity and composition. These findings demonstrate the importance of carefully defining the physiological scale of ecosystem function and performing community measurements that represent the range of possible controls on ecosystem processes.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2013

Risk reporting in the Chinese news media in response to radiation threat from the Fukushima nuclear reactor crisis

On March 11, 2011, the northeastern coast of Japan was struck by 9.0-magnitude earthquake that triggered a devastating tsunami. Aside from the huge toll in people's lives and severe damages to property, the tremor sent the Fukushima Daiichi Nuclear Power Plant on a tailspin, causing hydrogen explosions in three reactors, and sending radioactive materials into the air and bodies of water. Declared the largest nuclear disaster since Chernobyl, the crisis threatened neighboring countries, including China (International Business Times, 2011). On March 28, low levels of iodine-131, cesium-137 and strontium, believed to have drifted from Japan, were detected in the air over Heilongjiang province in the northeast part of China and in seawater samples collected in the eastern coastal areas (Qianjiang Eve News, 2011). Because these chemicals can enter the food chain and adversely affect human health (Ifeng.com, 2011), people became understandably anxious and the government had to avert panic. This study asks: How did the Chinese media report the risks attendant to this event? A content analysis of 45 straight news reports published by the Chinese press from March 16, 2011 to April 25, 2011 was conducted. The analysis focused on how the media explained the risk, portrayed potential harm, reported on government actions to safeguard public health, and provided suggestions to reduce public fear. The sources of information cited in the reports were also identified. The articles examined were collected from People.com, a comprehensive online archive of news reports, using 'Fukushima' and 'nuclear radiation' as search terms. The results indicated journalistic practices that left much to be desired in terms of risk reporting. First, the articles explained little about the technical aspects of the radiation leaks and failed to give audiences a general indication of levels of risk. Second, the media over-emphasized the government's position that the environment was safe despite the more rampant word-of-mouth reports to the contrary, a slant that may have done nothing to allay public fear. Third, there was a dearth of information about what the government intends to do to alleviate the situation and suggestions about what people can do to protect themselves. The themes of news reports may be attributed to experts from research institutions and government officials who were the most frequently cited sources of facts, analyses, interpretations, and opinions. Scientists and nuclear experts were cited the most in the news reports. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2019

Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella , and fimbriae-encoding bacteria

Necrotizing enterocolitis (NEC) is a devastating intestinal disease that occurs primarily in premature infants. We performed genome-resolved metagenomic analysis of 1163 fecal samples from premature infants to identify microbial features predictive of NEC. Features considered include genes, bacterial strain types, eukaryotes, bacteriophages, plasmids, and growth rates. A machine learning classifier found that samples collected before NEC diagnosis harbored significantly more Klebsiella , bacteria encoding fimbriae, and bacteria encoding secondary metabolite gene clusters related to quorum sensing and bacteriocin production. Notably, replication rates of all bacteria, especially Enterobacteriaceae, were significantly higher 2 days before NEC diagnosis. The findings uncover biomarkers that could lead to early detection of NEC and targets for microbiome-based therapeutics.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2012

Evaluation of a Genome-Scale In Silico Metabolic Model for Geobacter metallireducens Using Proteomic Data from a Field Biostimulation Experiment

Biomass and shotgun global proteomics data that reflected relative protein abundances from samples collected during the 2008 experiment at the U.S. Department of Energy Integrated Field-Scale Subsurface Research Challenge site in Rifle, Colorado, provided an unprecedented opportunity to validate a genome-scale metabolic model of Geobacter metallireducens and assess its performance with respect to prediction of metal reduction, biomass yield, and growth rate under dynamic field conditions. Reconstructed from annotated genomic sequence, biochemical, and physiological data, the constraint-based in silico model of G. metallireducens relates an annotated genome sequence to the physiological functions with 697 reactions controlled by 747 enzyme-coding genes. Proteomic analysis showed that 180 of the 637 G. metallireducens proteins detected during the 2008 experiment were associated with specific metabolic reactions in the in silico model. When the field-calibrated Fe(III) terminal electron acceptor process reaction in a reactive transport model for the field experiments was replaced with the genome-scale model, the model predicted that the largest metabolic fluxes through the in silico model reactions generally correspond to the highest abundances of proteins that catalyze those reactions. Central metabolism predicted by the model agrees well with protein abundance profiles inferred from proteomic analysis. Model discrepancies with the proteomic data, such as the relatively low fluxes through amino acid transport and metabolism, revealed pathways or flux constraints in the in silico model that could be updated to more accurately predict metabolic processes that occur in the subsurface environment.

Fang, Yilin↗
DOE OSTI2014

Identification and environmental distribution of dcpA encoding the 1,2-dichloropropane-to-propene reductive dehalogenase in organohalide-respiring Chloroflexi

Dehalococcoides mccartyi (Dhc) strains KS and RC grow with 1,2-dichloropropane (1,2-D) as an electron acceptor in enrichment cultures derived from hydrocarbon-contaminated and pristine river sediments, respectively. Transcription, expression, enzymatic and PCR analyses implicated the reductive dehalogenase gene dcpA in 1,2-D dichloroelimination to propene and inorganic chloride. Quantitative real-time PCR (qPCR) analyses demonstrated Dhc cell increase during growth with 1,2-D and suggested that both Dhc strains carried a single dcpA gene copy per genome. Dhc strain RC and strain KS produced 1.8 0.1 x 107 and 1.4 0.5 x 107 cells per mole of propene formed, respectively. The dcpA gene was identified in 1,2-D-to-propene-dechlorinating microcosms established with sediment samples collected from different geographical locations in Europe and North and South America. Clone library analysis revealed two distinct dcpA phylogenetic clusters, both of which the dcpA gene-targeted qPCR assay captured, suggesting the qPCR assay is useful for site assessment and bioremediation monitoring at 1,2-D-contaminated sites.

Padilla-Crespo, Elizabeth↗
DOE OSTI2013

The Draft Genome Sequence of Nocardioides sp. Strain CF8 Reveals the Scope of Its Metabolic Capabilities

Nocardioides sp. strain CF8 was isolated from a soil sample collected at the Hanford Department of Energy site, Richland, WA. The strain was identified in microcosms based on its ability to grow on butane and has been characterized for its potential applications in the biodegradation of halogenated hydrocarbons. Here, the draft genome sequence is reported.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Isolation and Characterization of Bacterial Cellulase Producers for Biomass Deconstruction: A Microbiology Laboratory Course.

The conversion of biomass to biofuels presents a solution to one of the largest global challenges of our era, climate change. A critical part of this pipeline is the process of breaking down cellulosic sugars from plant matter to be used by microbes containing biosynthetic pathways that produce biofuels or bioproducts. In this inquiry-based course, students complete a research project that isolates cellulase-producing bacteria from samples collected from the environment. After obtaining isolates, the students characterize the production of cellulases. Students then amplify and sequence the 16S rRNA genes of confirmed cellulase producers and use bioinformatic methods to identify the bacterial isolates. Throughout the course, students learn about the process of generating biofuels and bioproducts through the deconstruction of cellulosic biomass to form monosaccharides from the biopolymers in plant matter. The program relies heavily on active learning and enables students to connect microbiology with issues of sustainability. In addition, it provides exposure to basic microbiology, molecular biology, and biotechnology laboratory techniques and concepts. The described activity was initially developed for the Introductory College Level Experience in Microbiology (iCLEM) program, a research-based immersive laboratory course at the US Department of Energy Joint BioEnergy Institute. Originally designed as an accelerated program for high-potential, low-income, high school students (11th–12th grade), this curriculum could also be implemented for undergraduate coursework in a research-intensive laboratory course at a two- or four-year college or university.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome

ABSTRACT Diet can influence the composition of the human microbiome, and yet relatively few dietary ingredients have been systematically investigated with respect to their impact on the functional potential of the microbiome. Dietary resistant starch (RS) has been shown to have health benefits, but we lack a mechanistic understanding of the metabolic processes that occur in the gut during digestion of RS. Here, we collected samples during a dietary crossover study with diets containing large or small amounts of RS. We determined the impact of RS on the gut microbiome and metabolic pathways in the gut, using a combination of “omics” approaches, including 16S rRNA gene sequencing, metaproteomics, and metabolomics. This multiomics approach captured changes in the abundance of specific bacterial species, proteins, and metabolites after a diet high in resistant starch (HRS), providing key insights into the influence of dietary interventions on the gut microbiome. The combined data showed that a high-RS diet caused an increase in the ratio of Firmicutes to Bacteroidetes , including increases in relative abundances of some specific members of the Firmicutes and concurrent increases in enzymatic pathways and metabolites involved in lipid metabolism in the gut. IMPORTANCE This work was undertaken to obtain a mechanistic understanding of the complex interplay between diet and the microorganisms residing in the intestine. Although it is known that gut microbes play a key role in digestion of the food that we consume, the specific contributions of different microorganisms are not well understood. In addition, the metabolic pathways and resultant products of metabolism during digestion are highly complex. To address these knowledge gaps, we used a combination of molecular approaches to determine the identities of the microorganisms in the gut during digestion of dietary starch as well as the metabolic pathways that they carry out. Together, these data provide a more complete picture of the function of the gut microbiome in digestion, including links between an RS diet and lipid metabolism and novel linkages between specific gut microbes and their metabolites and proteins produced in the gut.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

A novel conjugative transposon carrying an autonomously amplified plasmid

Tetracyclines serve as broad-spectrum antibiotics to treat bacterial infections. The discovery of new tetracycline resistance genes has led to new questions about the underlying mechanisms of resistance, gene transfer, and their relevance to human health. We tracked changes in the abundance of a 55-kbp conjugative transposon (CTn214) carrying tetQ, a tetracycline resistance gene, within a Bacteroides fragilis metagenome-assembled genome derived from shotgun sequencing of microbial DNA extracted from the ileal pouch of a patient with ulcerative colitis. The mapping of metagenomic reads to CTn214 revealed the multi-copy nature of a 17,044-nt region containing tetQ in samples collected during inflammation and uninflamed visits. B. fragilis cultivars isolated from the same patient during periods of inflammation harbored CTn214 integrated into the chromosome or both a circular, multi-copy, extrachromosomal region of the CTn214 containing tetQ and the corresponding integrated form. The tetracycline-dependent mechanism for the transmission of CTn214 is nearly identical to a common conjugative transposon found in the genome of B. fragilis (CTnDOT), but the autonomously amplified nature of a circular 17,044-nt region of CTn214 that codes for tetQ and the integration of the same sequence in the linear chromosome within the same cell is a novel observation. Genome and transcriptome sequencing of B. fragilis cultivars grown under different concentrations of tetracycline and ciprofloxacin indicates that tetQ in strains containing the circular form remains actively expressed regardless of treatment, while the expression of tetQ in strains containing the linear form increases only in the presence of tetracycline.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Campylobacter jejuni resistance to human milk involves the acyl carrier protein AcpP

Campylobacter jejuni is a common foodborne pathogen worldwide that is associated with high rates of morbidity and mortality among infants in low- to middle-income countries (LMICs). Human milk provides infants with an important source of nutrients and contains antimicrobial components for protection against infection. However, recent studies, including our own, have found significantly higher levels of Campylobacter in diarrheal stool samples collected from breastfed infants compared to non-breastfed infants in LMICs. We hypothesized that C. jejuni has unique strategies to resist the antimicrobial properties of human milk. Transcriptional profiling found human milk exposure induces genes associated with ribosomal function, iron acquisition, and amino acid utilization in C. jejuni strains 81–176 and 11168. However, unidentified proteinaceous components of human milk prevent bacterial growth. Evolving both C. jejuni isolates to survive in human milk resulted in mutations in genes encoding the acyl carrier protein (AcpP) and the major outer membrane porin (PorA). Introduction of the PorA/AcpP amino acid changes into the parental backgrounds followed by electron microscopy showed distinct membrane architectures, and the AcpP changes not only significantly improved growth in human milk, but also yielded cells surrounded with outer membrane vesicles. Analyses of the phospholipid and lipooligosaccharide (LOS) compositions suggest an imbalance in acyl chain distributions. For strain 11168, these changes protect both evolved and 11168ΔacpP G33R strains from bacteriophage infection and polymyxin killing. Taken together, this study provides insights into how C. jejuni may evolve to resist the bactericidal activity of human milk and flourish in the hostile environment of the gastrointestinal tract.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2026

Metagenomes and metagenome-assembled genomes from a nutrient removal plant at Los Angeles County Sanitation Districts (LACSD) that transitioned from high to low dissolved oxygen

Operating biological nutrient removal (BNR) wastewater treatment plants with low dissolved oxygen (DO) conditions can reduce energy costs. We report on five metagenomes and 492 metagenome-assembled genomes (MAGs) obtained from samples collected at the Pomona water reclamation plant before and after a DO reduction from 3.5 to 0.7 mg/L.

dissolved oxygen↗
DOE OSTI2016

Zonal Soil Type Determines Soil Microbial Responses to Maize Cropping and Fertilization

Microbial communities are essential drivers of soil functional processes such as nitrification and heterotrophic respiration. Although there is initial evidence revealing the importance of soil type in shaping microbial communities, there has been no in-depth, comprehensive survey to robustly establish it as a major determinant of microbial community composition, functional gene structure, or ecosystem functioning. We examined bacterial and fungal community structures using Illumina sequencing, microbial functional genes using GeoChip, microbial biomass using phospholipid fatty acid analysis, as well as functional processes of soil nitrification potential and CO 2 efflux. We demonstrated the critical role of soil type in determining microbial responses to land use changes at the continental level. Our findings underscore the inherent difficulty in generalizing ecosystem responses across landscapes and suggest that assessments of community feedback must take soil types into consideration. Soil types heavily influence ecological dynamics. It remains controversial to what extent soil types shape microbial responses to land management changes, largely due to lack of in-depth comparison across various soil types. Here, we collected samples from three major zonal soil types spanning from cold temperate to subtropical climate zones. We examined bacterial and fungal community structures, as well as microbial functional genes. Different soil types had distinct microbial biomass levels and community compositions. Five years of maize cropping (growing corn or maize) changed the bacterial community composition of the Ultisol soil type and the fungal composition of the Mollisol soil type but had little effect on the microbial composition of the Inceptisol soil type. Meanwhile, 5 years of fertilization resulted in soil acidification. Microbial compositions of the Mollisol and Ultisol, but not the Inceptisol, were changed and correlated ( P < 0.05) with soil pH. These results demonstrated the critical role of soil type in determining microbial responses to land management changes. We also found that soil nitrification potentials correlated with the total abundance of nitrifiers and that soil heterotrophic respiration correlated with the total abundance of carbon degradation genes, suggesting that changes in microbial community structure had altered ecosystem processes. Microbial communities are essential drivers of soil functional processes such as nitrification and heterotrophic respiration. Although there is initial evidence revealing the importance of soil type in shaping microbial communities, there has been no in-depth, comprehensive survey to robustly establish it as a major determinant of microbial community composition, functional gene structure, or ecosystem functioning. We examined bacterial and fungal community structures using Illumina sequencing, microbial functional genes using GeoChip, microbial biomass using phospholipid fatty acid analysis, as well as functional processes of soil nitrification potential and CO 2 efflux. We demonstrated the critical role of soil type in determining microbial responses to land use changes at the continental level. Our findings underscore the inherent difficulty in generalizing ecosystem responses across landscapes and suggest that assessments of community feedback must take soil types into consideration.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Volcanic stratigraphy and age model of the Kimama deep borehole (Project Hotspot): Evidence for 5.8 million years of continuous basalt volcanism, central Snake River Plain, Idaho

The Snake River Plain of central Idaho represents the world’s best example of a mantle hotspot track impinging upon continental crust and provides a record of bimodal volcanism extending over 12 Ma to the present. Project Hotspot recovered almost 2 km of continuous drill core from the Kimama borehole, located in central Idaho on the axial volcanic zone. The Kimama drill core represents the most complete record of mafic volcanism along the Yellowstone–Snake River Plain hotspot track. A total of 432 basalt flow units, representing 183 basalt flows, 78 basalt flow groups, and 34 super groups, along with 42 sediment interbeds are recognized using volcanic facies observations, stratigraphic relationships, borehole geophysical logs, and paleosecular variation in magnetostratigraphy. Rhyolite and other non-basaltic volcanic materials were not encountered in the drill core. Ages for six basalt lava flows were determined by 40 Ar/ 39 Ar using incremental heating experiments. Paleomagnetic inclination was measured on over 1200 samples collected at roughly 2-m-depth intervals, yielding mean values of paleosecular variation between ±50° to ±70° in Kimama flow groups, close to the expected 61° axial dipole average for the Kimama borehole location. Twenty-three magnetic reversals were identified and correlated to dated geomagnetic chrons and subchrons and compared with the 40 Ar/ 39 Ar radiometric ages. A linear fit to 40 Ar/ 39 Ar dates, geomagnetic chron and subchron boundaries, and volcanogenic zircon U-Pb ages defines a mean accumulation rate of ~320 m/m.y. and extrapolates to a bottom hole age of 6.3 Ma. Average thicknesses of lithologic units increase from 2.7 m (sediment), 4 m (flow units), 10 m (flows), 23 m (flow groups), to 53 m (super groups). On average, one lava flow inundated the Kimama borehole location every 33 k.y. Intercalated sediments, ranging from 0.06 to 24.5 m thick, make up roughly 6% of the drill core and indicate lulls in local volcanic activity that may have lasted up to 77 k.y. Neutron and gamma-ray logs supplement observations from the drill cores: neutron logs document individual flow units through the contrast between massive flow interiors and more porous flow surfaces, and gamma-ray logs document the depth and thickness of sedimentary interbeds and high–K-Fe basalts. The 5.8 m.y. duration of basaltic volcanism in the Kimama drill core implies a steady rate of volcanism, indicating a relatively stable rate of mantle upflow along the lithosphere-mantle boundary in the wake of Yellowstone–Snake River Plain plume volcanism.

58 GEOSCIENCES↗
DOE OSTI2018

Content and Isotope Ratios of Noble Gases in Congelation Ice of Lake Vostok

Isotope ratios of noble gases (He, Ne, Ar) were studied in samples collected by degassing of cores of water frozen over a glacier of Lake Vostok. The gases were collected into glass retorts during three days of degassing of cores, which have just been extracted from the borehole. Within the error, the isotope {sup 3}He/{sup 4}He ratios of 0.28 ± 0.08 R{sub A} (R{sub A} = 1.38 × 10{sup –6} is the ratio for air) correspond to those from [1]. The {sup 4}He/{sup 20}Ne and {sup 40}Ar/{sup 36}Ar ratios (12.4 ± 4.6 R{sub A} and 1.0074 ± 0.0023 R{sub A}, respectively) exceed their contents in air ({sup 4}He/{sup 20}Ne{sub A} = 0.29; {sup 40}Ar/{sup 36}Ar{sub A} = 298.6) and may indicate some contribution of terrigenous gas to the gaseous balance of the lake, as well as the high content of ancient ground waters in the lake. The {sup 3}He/{sup 4}He ratio of 0.28 R{sub A} means low mantle {sup 3}He flux typical of continental platforms far from active rift zones.

54 ENVIRONMENTAL SCIENCES↗