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DOE OSTI2024

Evanescent and inertial-like waves in rigidly rotating odd viscous liquids

Three-dimensional non-rotating odd viscous liquids give rise to Taylor columns and support axisymmetric inertial-like waves ( J. Fluid Mech ., vol. 973, 2023, A30). When an odd viscous liquid is subjected to rigid-body rotation however, there arise in addition a plethora of other phenomena that need to be clarified. In this paper, we show that three-dimensional incompressible or two-dimensional compressible odd viscous liquids, rotating rigidly with angular velocity 𝛺, give rise to both oscillatory and evanescent inertial-like waves or a combination thereof (which we call of mixed type) that can be non-axisymmetric. By evanescent, we mean that along the radial direction, typically when moving away from a solid boundary, the velocity field decreases exponentially. These waves precess in a prograde or retrograde manner with respect to the rotating frame. The oscillatory and evanescent waves resemble respectively the body and wall-modes observed in (non-odd) rotating Rayleigh–Bénard convection ( J. Fluid Mech ., vol. 248, 1993, pp. 583–604). We show that the three types of waves (wall, body or mixed) can be classified with respect to pairs of planar wavenumbers 𝜅 which are complex, real or a combination, respectively. Experimentally, by observing the precession rate of the patterns, it would be possible to determine the largely unknown values of the odd viscosity coefficients. This formulation recovers as special cases recent studies of equatorial or topological waves in two-dimensional odd viscous liquids which provided examples of the bulk–interface correspondence at frequencies 𝜔 < 2⁢𝛺. We finally point out that the two- and three-dimensional problems are formally equivalent. Their difference then lies in the way data propagate along characteristic rays in three dimensions, which we demonstrate by classifying the resulting Poincaré–Cartan equations.

Mechanics↗

NASA NTRS1943

Requirements for Auxiliary Stiffeners Attached to Panels Under Combined Compression and Shear

Panels of aluminum alloy sheets, framed by side and end stiffeners, were subjected to combined loading by means of offset knife edges applying loads to top and bottom end plates with reacting forces against the end plates supplied by laterally acting rollers. The test specimens were 17S-T aluminum alloy shoots 0.040 inch thick in panels of 10-inch width and three different lengths (approximately 10, 26, and 30 inch). Data were obtained for the bowing of transverse and longitudinal ribs of rectangular cross section and varying depths mounted on one side of the sheet only, for several ratios of compression to shear loads. Limiting values of the moments of inertia were calculated from these measurements. The experimental values exceed the theoretical values given by Timoshenko for the case of simply supported sheets with uniformly distributed boundary stresses. The work reported includes measurements of the effective shear moduli of the nine test panels with and without ribs. These data are compared with values published by Lahdo and Wagner.

ALUMINUM ALLOYS, SHEET - ALCOA 17ST - STRENGTH↗

NASA NTRS1995

Some remarks on waves in the solar wind

Waves are significant to the solar wind in two ways as modifiers of the particle distribution functions, and as diagnostics. In addition, the solar wind serves as an important laboratory for the study of plasma wave processes, as it is possible to make detailed measurements of phenomena which are too small to be easily measured by laboratory sized sensors. There are two areas where waves (we include discontinuities under this heading) must make important modifications of the distribution functions: in accelerating the alpha particles to higher speeds than the protons (Marsch et al.) and in accelerating the solar wind itself. A third area is possibly in maintaining the relative isotropy of the solar wind ion distribution in the solar wind rest frame. As the solar wind is nearly collisionless, the ions should conserve magnetic moment in rushing out from the sun, and therefore Tperp/B should be relatively constant, but it is obviously not. This has not received much attention. The waves, both electromagnetic and electrostatic, which are pan of the solar Type 111 burst phenomenon, have been extensively studied as examples of nonlinear plasma phenomena, and also used as remote sensors to trace the solar magnetic field. The observations made by Ulysses show that the field can be traced in this way out to perhaps a little more than an A.U., but then the electromagnetic pan of the type 111 burst fades out. Nevertheless, sometimes Langmuir waves appear at Ulysses at an appropriate extrapolated time. This seems to support the picture in which the electromagnetic waves at the fundamental plasma frequency are trapped in density fluctuations. Langmuir waves in the solar wind are usually in quasi-thermal equilibrium quasi because the solar wind itself is not isothermal. The Observatory of Paris group (Steinberg. Meyer-Vernet, Hoang) has exploited this with an experiment on WIND which is capable of providing density and temperature on a faster time scale than hitherto. Recently it has been found that Langmuir waves are associated with magnetic holes. This may help to elucidate the nature of magnetic holes. Nonlinear processes are important in the transformation of wave energy to panicle energy. Some recent examples from WIND data will be shown.

Kellogg, Paul J.↗

NASA NTRS1999

A Comprehensive Orbit Reconstruction for the Galileo Prime Mission in the J2000 System

The Galileo spacecraft arrived at Jupiter in December of 1995 to begin an orbital tour of the Jovian system. The objective of the tour was up close study of the planet, its satellites, and its magnetosphere. The spacecraft completed its 11 orbit prime mission in November of 1997 having had 16 successful close encounters with the Galilean satellites (including two prior to Jupiter orbit insertion). Galileo continues to operate and will have made an additional 10 orbits of Jupiter by the date of this Conference. Earlier papers discuss the determination of the spacecraft orbit in support of mission operations from arrival at Jupiter through the first 9 orbits. In this paper we re-examine those earlier orbits and extend the analysis through orbit 12, the first orbit of the Galileo Europa Mission (GEM). The objective of our work is the reconstruction of the spacecraft trajectory together with the development of a consistent set of ephemerides for the Galilean satellites. As a necessary byproduct of the reconstruction we determine improved values for the Jovian system gravitational parameters and for the Jupiter pole orientation angles. Our preliminary analyses have already led to many of the results reported in the scientific literature. Unlike the Galileo Navigation Team which operates in the EME-1950 coordinate system, we elected to work in the (J2000) International Celestial Reference Frame (ICRF), the reference frame of the current JPL planetary and satellite ephemerides as well as the standard frame of the international astronomical and planetary science community. Use of this frame permits more precise modelling of the spacecraft and satellite observations. Moreover, it is the frame of choice for all other operational JPL missions and will probably be the frame for future missions for some time. Consequently, our adoption of the ICRF will facilitate the combination of our results with any obtained from future missions (e.g. the proposed Europa Orbiter mission). In addition, our results may be used by the science community, without need of a reference frame conversion.

Jacobson, Robert A.↗

NASA NTRS2002

Acoustic Benefits of Stator Sweep and Lean for a High Tip Speed Fan

A model high-speed fan stage was acoustically tested in the NASA Glenn 9- by 15-Foot Low Speed Wind Tunnel at takeoff/approach flight conditions. The fan was designed for a corrected rotor tip speed of 442 m/s (1450 ft/s), and had a powered core, or booster stage, giving the model a nominal bypass ratio of 5. The model also had a simulated engine pylon and nozzle bifurcation contained within the bypass duct. The fan was tested with three stator sets to evaluate acoustic benefits associated with a swept and leaned stator and with a swept integral vane/frame stator which incorporated some of the swept and leaned features as well as eliminated some of the downstream support structure. The baseline fan with the wide chord rotor and baseline stator approximated a current GEAE CF6 engine. A flyover effective perceived noise level (EPNL) code was used to generate relative EPNL values for the various configurations. Flyover effective perceived noise levels (EPNL) were computed from the model data to help project noise benefits. A tone removal study was also performed. The swept and leaned stator showed a 3 EPNdB reduction at lower fan speeds relative to the baseline stator; while the swept integral vane/frame stator showed lowest noise levels at intermediate fan speeds. Removal of the bypass blade passage frequency rotor tone (BPF) showed a 4 EPNdB reduction for the baseline and swept and leaned stators, and a 6 EPNdB reduction for the swept integral vane/ frame stator. Therefore, selective tone removal techniques such as active noise control and/or tuned liner could be particularly effective in reducing noise levels for certain fan speeds.

Woodward, Richard P.↗

DOE OSTI2024

Providing Experimental Infrastructure for Accelerating Advanced Reactor Demonstrations through the National Reactor Innovation Center

A suite of experimental infrastructure projects has been developed by the National Reactor Innovation Center to accelerate advanced reactor demonstrations and facilitate their development, addressing crucial gaps in data, materials characterization, and modeling. First, the Molten Salt Thermophysical Examination Capability (MSTEC) provides a specialized platform for post-irradiation characterization of molten salt reactor fuel, coolant salts, and structural materials, essential for supporting the design and operation of advanced reactors and future commercial molten salt reactor development and licensing. The Virtual Test Bed (VTB) complements these efforts by leveraging advanced modeling and simulation tools to evaluate reactor performance and safety. Serving as a library of reference models, the VTB offers a database of multiphysics reactor models, facilitating rapid safety evaluations and includes continuous software quality assurance, crucial for accelerating deployment while maintaining reliability. Additionally, the Helium Component Test Facility (HeCTF) addresses the need for high-temperature helium-cooled reactor component testing. As the first-of-its-kind facility in the United States, HeCTF emulates high-temperature gas reactor conditions, reducing time and cost associated with component validation, thereby accelerating reactor development. Finally, In-cell Thermal Creep Frames provide a unique solution for obtaining thermal creep data from irradiated materials, critical for materials qualification and licensing. Developed by the National Reactor Innovation Center, these compact frames enable the examination of previously irradiated materials, overcoming traditional limitations and enhancing the understanding of mechanical properties crucial for reactor development. Collectively, these experimental infrastructure projects form a comprehensive framework aimed at expediting advanced reactor demonstrations, fostering innovation, and ensuring the viability of next-generation nuclear energy solutions.

22 - GENERAL STUDIES OF NUCLEAR REACTORS↗

NASA NTRS2000

Electric Plasma Arc-Lamp Combustor Liner Durability Test System Developed

Silicon carbide matrix composites are candidate materials for high-temperature combustor liners. Because through-the-thickness thermal gradients are the primary cause of stress on combustor liners, a unique test facility was developed at the NASA Glenn Research Center at Lewis Field to simulate in-service pure thermal stress distributions in fiber reinforced silicon carbide cylinders. It was developed initially under Phase II of the High- Speed Research Program. This test stand can accommodate 8-in.-long test cylinders that have outer diameters of 4 in. and a wall thickness of about 0.08 to 0.12 in. One cylinder at a time is loaded vertically into the test stand. Water-cooled plates enclose the open ends of the cylinder and provide cooling. Load plates on the exterior side of the water-cooled plates provide support and compression loads. To evaluate a combustor liner material s potential performance, researchers induce thermal gradients with an axisymmetric, direct-current, electric arc within the cylinder while refrigerated air at a rate of 1.5 lb/sec impinges on the outside surface of the cylinder. The achievable through-the-thickness thermal gradient is predicted to be in excess of 200 C. The 8-in. long, 0.5-in.-diameter plasma arc emits full spectrum visible light; radiant intensity exceeds 300 Watts per square centimeters to produce temperatures in excess of 1500 C on materials with emissivity near unity. Because the system does not rely upon the combustion of fuels to achieve the related thermal conditions, ancillary environmental reactions with the sample are eliminated. The system incorporates a standard mechanical test frame, which can impose constant as well cyclical axial stresses up to 2200 lb upon the test piece. Silicon-carbide-fiber reinforced silicon carbide matrix composite cylinders were instrumented with thin-film thermocouples to obtain through-the-thickness thermal flux measurements. Inside wall temperatures reached 1200 C with only 250 A of current. One of the special features of this configuration is the creation of hoop stress states within the cylinder, which up this point have not been obtainable in planar coupon tests. This facility will allow various operational modes, including accelerated tests of thermal transients simulating the effects of repeated engine ignition as well as prescribed thermal and mechanical histories to simulate various duty cycle profiles. Tests can now be performed on thermal-barrier-coated metallic liners and ceramic composite liners that require a combination of high heat flux and controlled mechanical stresses.

Goldsby, Jon C.↗

NASA NTRS2006

Computational Spectroscopy of Polycyclic Aromatic Hydrocarbons In Support of Laboratory Astrophysics

Polycyclic aromatic hydrocarbons (PAHs) are strong candidates for the molecular carriers of the unidentified infrared bands (UIR) and the diffuse interstellar bands (DIBs). In order to test the PAH hypothesis, we have systematically measured the vibronic spectra of a number of jet-cooled neutral and ionized PAHs in the near ultraviolet (UV) to visible spectral ranges using the cavity ring-down spectroscopy. To support this experimental effort, we have carried out theoretical studies of the spectra obtained in our measurements. Ab initio and (time-dependent) density.functiona1 theory calculations are performed to obtain the geometries, energetics, vibrational frequencies, transition dipole moments, and normal coordinates of these PAH molecules. Franck-Condon (FC) calculations and/or vibronic calculations are then performed using the calculated normal coordinates and vibrational frequencies to simulate the vibronic spectra. It is found that vibronic interactions in these conjugated pi electron systems are often strong enough to cause significant deviations from the Born-Oppenheimer (BO) approximation. For vibronic transitions that are well described by the BO approximation, the vibronic band profiles are simulated by calculating the rotational structure of the vibronic transitions. Vibronic oscillator strength factors are calculated in the frame of the FC approximation from the electronic transition dipole moments and the FC factors. This computational effort together with our experimental measurements provides, for the first time, powerful tools for comparison with space-based data and, hence, a powerful approach to understand the spectroscopy of interstellar PAH analogs and the nature of the UIR and DIBs.

Tan, Xiaofeng↗

NASA NTRS2011

Low Cost Nuclear Thermal Rocket Cermet Fuel Element Environment Testing

Deep space missions with large payloads require high specific impulse (Isp) and relatively high thrust in order to achieve mission goals in reasonable time frames. Conventional, storable propellants produce average Isp. Nuclear thermal rockets (NTR) capable of high Isp thrust have been proposed. NTR employs heat produced by fission reaction to heat and therefore accelerate hydrogen which is then forced through a rocket nozzle providing thrust. Fuel element temperatures are very high (up to 3000K) and hydrogen is highly reactive with most materials at high temperatures. Data covering the effects of high temperature hydrogen exposure on fuel elements is limited. The primary concern is the mechanical failure of fuel elements which employ high-melting-point metals, ceramics or a combination (cermet) as a structural matrix into which the nuclear fuel is distributed. It is not necessary to include fissile material in test samples intended to explore high temperature hydrogen exposure of the structural support matrices. A small-scale test bed designed to heat fuel element samples via non-contact RF heating and expose samples to hydrogen is being developed to assist in optimal material and manufacturing process selection without employing fissile material. This paper details the test bed design and results of testing conducted to date.

Bradley, David E.↗

NASA NTRS2012

Control and Non-Payload Communications Links for Integrated Unmanned Aircraft Operations

Technology for unmanned aircraft has advanced so rapidly in recent years that many new applications to public and commercial use are being proposed and implemented. In many countries, emphasis is now being placed on developing the means to allow unmanned aircraft to operate within non-segregated airspace along with commercial, cargo and other piloted and passenger-carrying aircraft.In the U.S., Congress has mandated that the Federal Aviation Administration reduce and remove restrictions on unmanned aircraft operations in a relatively short time frame. To accomplish this, a number of technical and regulatory hurdles must be overcome. A key hurdle involve the communications link connecting the remote pilot located at a ground control station with the aircraft in the airspace, referred to as the Control and Non-Payload Communications (CNPC) link. This link represents a safety critical communications link, and thus requires dedicated and protected aviation spectrum as well as national and international standards defining the operational requirements the CNPC system. The CNPC link must provide line-of-site (LOS) communications, primarily through a ground-based communication system, and beyond-line-of-sight (BLOS) communication achieved using satellite communications. In the U.S., the National Aeronautics and Space Administration (NASA) is charged with providing the technical body of evidence to support spectrum allocation requirements and national and international standards development for the CNPC link. This paper provides a description of the CNPC system, an overview of NASA's CNPC project, and current results in technology assessment, air-ground propagation characterization, and supporting system studies and analyses will be presented.

Kerczewski, Robert J.↗

NASA NTRSDate not supplied

VTXO: The Virtual Telescope for X-ray Observations

The Virtual Telescope for X-ray Observations (VTXO) will use lightweight Phase Frensel Lenses (PFLs) in a virtual X-ray telescope with⇠1 km focal length and with⇠50 milli-arc second angular resolution. VTXO is formed by using precision formation flying of two SmallSats: a smaller OpticsSat that houses the PFLs and navigation beacons while a larger DetectorSat contains an X-ray camera, a precision start tracker, and the propulsion for the formation flying. The baseline flight dynamics uses a highly elliptical super synchronous orbit allow the formation to hold in an inertial frame around the 90,000 km apogee for 10 hours of the 32.5 hour orbit with nearly a year mission lifetime. VTXO’s fine angular resolution enables measuring the environments close to the central engines of bright compact X-ray sources. This X-ray imaging capability allows for the study of the effects of dust scattering near to the central objects such as Cyg X-3 and GX 5-1, for the search for jet structure near to the compact object in X-ray novae such as Cyg X-1 and GRS 1915+105, and for the search for structure in the termination shock of in the Crab pulsar wind nebula. The VTXO SmallSat and instrument designs, mission parameters, and science performance are described. VTXO development was supported as one of the selected 2018 NASA Astrophysics SmallSat Study (AS3) missions

John F Krizmanic↗

NASA NTRS2000

Visually Lossless Data Compression for Real-Time Frame/Pushbroom Space Science Imagers

A visually lossless data compression technique is currently being developed for space science applications under the requirement of high-speed push-broom scanning. The technique is also applicable to frame based imaging and is error-resilient in that error propagation is contained within a few scan lines. The algorithm is based on a block transform of a hybrid of modulated lapped transform (MLT) and discrete cosine transform (DCT), or a 2-dimensional lapped transform, followed by bit-plane encoding; this combination results in an embedded bit string with exactly the desirable compression rate as desired by the user. The approach requires no unique table to maximize its performance. The compression scheme performs well on a suite of test images typical of images from spacecraft instruments. Flight qualified hardware implementations are in development; a functional chip set is expected by the end of 2001. The chip set is being designed to compress data in excess of 20 Msamples/sec and support quantizations from 2 to 16 bits.

Yeh, Pen-Shu↗

NASA NTRS2018

Automated Pneumothorax Diagnosis using Deep Neural Networks

Thoracic ultrasound can provide information leading to rapid diagnosis of pneumothorax with improved accuracy over the standard physical examination and with higher sensitivity than anteroposterior chest radiography. However, the clinical We have Furthermore, remote environments, such as the battlefield or deep-space exploration, may lack expertise for diagnosing developed an automated image interpretation pipeline for the analysis of thoracic ultrasound data and the classification of pneumothorax events to provide decision support in such situations. Our pipeline consists of image preprocessing, data augmentation, and deep learning architectures for medical diagnosis. In this work, we demonstrate that robust, accurate interpretation of chest images and video can be achieved using deep neural networks. A number of novel image processing techniques were employed to achieve this result. Affine transformations were applied for data augmentation. Hyperparameters were optimized for learning rate, dropout regularization, batch size, and epoch iteration by a sequential model-based Bayesian approach. In addition, we utilized pretrained architecturesinterpretation of a patient medical image is highly operator dependent. certain pathologies., applying transfer learning and fine-tuning techniques to fully connected layers. Our pipeline yielded binary classification validation accuracies of 98.3% for M-mode images and 99.8% with B-mode video frames.

US Army collaboration↗

DOE OSTI2024

Modeling bacterial microcompartment architectures for enhanced cyanobacterial carbon fixation

The carboxysome is a bacterial microcompartment (BMC) which plays a central role in the cyanobacterial CO 2 -concentrating mechanism. These proteinaceous structures consist of an outer protein shell that partitions Rubisco and carbonic anhydrase from the rest of the cytosol, thereby providing a favorable microenvironment that enhances carbon fixation. The modular nature of carboxysomal architectures makes them attractive for a variety of biotechnological applications such as carbon capture and utilization. In silico approaches, such as molecular dynamics (MD) simulations, can support future carboxysome redesign efforts by providing new spatio-temporal insights on their structure and function beyond in vivo experimental limitations. However, specific computational studies on carboxysomes are limited. Fortunately, all BMC (including the carboxysome) are highly structurally conserved which allows for practical inferences to be made between classes. Here, we review simulations on BMC architectures which shed light on (1) permeation events through the shell and (2) assembly pathways. These models predict the biophysical properties surrounding the central pore in BMC-H shell subunits, which in turn dictate the efficiency of substrate diffusion. Meanwhile, simulations on BMC assembly demonstrate that assembly pathway is largely dictated kinetically by cargo interactions while final morphology is dependent on shell factors. Overall, these findings are contextualized within the wider experimental BMC literature and framed within the opportunities for carboxysome redesign for biomanufacturing and enhanced carbon fixation.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1992

Comparison of computer- and human-derived coronary angiographic end-point measures for controlled therapy trials

The Cholesterol Lowering Atherosclerosis Study, a randomized angiographic clinical trial, demonstrated the beneficial effect of niacin/colestipol plus diet therapy on coronary atherosclerosis. Outcome was determined by panel-based estimates (viewed in both still and cine modes) of percent stenosis severity and change in native artery and bypass graft lesions. Computer-based quantitative coronary angiography (QCA) was also used to measure lesion and bypass graft stenosis severity and change in individual frames closely matched in orientation, opacification, and cardiac phase. Both methods jointly evaluated 350 nonoccluded lesions. The correlation between QCA and panel estimates of lesion size was 0.70 (p less than 0.0001) and for change in lesion size was 0.28 (p = 0.002). Agreement between the two methods in classifying lesion changes (i.e., regression, unchanged, or progression) occurred for 60% (210 of 350) of the lesions kappa +/- SEM = 0.20 +/- 0.05, p less than 0.001). The panel identified 442 nonoccluded lesions for which QCA stenosis measurements could not be obtained. Lesions not measurable by QCA included those with stenosis greater than 85% that could not be reliably edge tracked, segments with diffuse or ecstatic disease that had no reliable reference diameter, and segments for which matched frames could not be located. Seventy-nine lesions, the majority between 21% and 40% stenosis, were identified and measured by QCA but were not identified by the panel. This comparison study demonstrates the need to consider available angiographic measurement methods in relation to the goals of their use.

NASA Center JPL↗

NASA NTRS1993

Narrow band imaging and long slit spectroscopy of UGC 5101

UGC 5101 (z = 0.04; D is approximately equal to 240 Mpc) is one of the so called Ultraluminous IRAS sources. Two important properties of the members of this group are their L(sub IR) is greater than or equal to 10(exp 12) solar luminosity, and their space density in the universe up to z is less than 0.1 is equal or even larger than the space density of the quasars. Further noteworthy features of the Ultraluminous IRAS sources are their being morphologically peculiar and the fact that they all seem to host active nuclei in their center. We have observed UGC 5101 in an effort to study the interplay between the gas ionized by the central active nucleus and that gas ionized by other processes which may hold important clues to the understanding of the entire picture of this object. In particular these other ionizing processes could well be massive stars formed recently after the galactic encounter and shocks possibly also related to the galaxy collision. The data that we discuss were obtained between Dec. 1989 and Jan. 1992 with the WHT 4.2 m telescope using the two-arm spectrograph ISIS. Several spectral frames were obtained at three different position angles: PA 84--along the tail of the galaxy; PA 32--along the dust lane; and PA 110. The blue spectra are centered on the H beta line, while the red spectra are centered on the H alpha line. In the configuration we used for the long slit spectra, the spectral scale was 0.74 A per pixel, and the spatial scale was .37 arcsec per pixel; we also observed the H alpha region with a spectral scale of .37 A per pixel, at position angle 84. The narrow band images were obtained at the auxiliary port of ISIS, with a scale of .2 arcsec per pixel, and were centered at the H alpha wavelength, and on the adjacent continuum. The H alpha images and the spectra support the following model. UGC 5101 hosts an active nucleus; the NLR extends up to about 1.5 kpc and shows a complex velocity field, superimposed on the rotation curve of the galaxy. Besides the NLR, in the H alpha image are visible tow bright cones that extend up to 3 kpc along PA 32. The long slit spectra at PA 32 show that the velocity field of the gas in these regions is peculiar, while the ionization structure of the gas is similar to that of the NLR.

Stanga, R. M.↗

DOE OSTI2024

Genomic and phenotypic characterization of multidrug-resistant Salmonella enterica serovar Reading isolates involved in a turkey-associated foodborne outbreak

Salmonella is a global bacterial foodborne pathogen associated with a variety of contaminated food products. Poultry products are a common source of Salmonella -associated foodborne illness, and an estimated 7% of human illnesses in the United States are attributed to turkey products. From November 2017 to March 2019, the Centers for Disease Control and Prevention reported a turkey-associated outbreak of multidrug-resistant (MDR; resistant to ≥3 antimicrobial classes) Salmonella enterica serovar Reading ( S . Reading) linked to 358 human infections in 42 US states and Canada. Since S . Reading was seldom linked to human illness prior to this outbreak, the current study compared genomic sequences of S . Reading isolates prior to the outbreak (pre-outbreak) to isolates identified during the outbreak period, focusing on genes that were different between the two groups but common within a group. Following whole-genome sequence analysis of five pre-outbreak and five outbreak-associated turkey/turkey product isolates of S . Reading, 37 genes located within two distinct chromosomal regions were identified only in the pre-outbreak isolates: (1) an ~5 kb region containing four protein-coding genes including uidA which encodes beta-glucuronidase, pgdA encoding peptidoglycan deacetylase, and two hypothetical proteins and (2) an ~28 kb region comprised of 32 phage-like genes and the xerC gene, which encodes tyrosine recombinase (frequently associated with phage genes). The five outbreak isolates also had a deletional event within the cirA gene, introducing a translational frame shift and premature stop codon. The cirA gene encodes a protein with dual receptor functions: a siderophore receptor for transport of dihydroxybenzoylserine as well as a colicin Ia/b receptor. Significant differences for the identified genetic variations were also detected in 75 S . Reading human isolates. Of the 41 S . Reading isolates collected before or in 2017, 81 and 90% of the isolates contained the uidA and pgdA genes, respectively, but only 24% of the isolates collected after 2017 harbored the uidA and pgdA genes. The truncation event within the cirA gene was also significantly higher in isolates collected after 2017 (74%) compared to before or in 2017 (5%). Phenotypic analysis of the S . Reading isolates for colicin and cefiderocol sensitivities (CirA) and β-methyl-D-glucuronic acid utilization (UidA and accessory proteins) supported the genomic data. Overall, a similar genome reduction pattern was generally observed in both the turkey and human isolates of S . Reading during the outbreak period, and the genetic differences were present in genes that could potentially promote pathogen dissemination due to variation in Salmonella colonization, fitness, and/or virulence.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1995

The Physics of Turbulence in the Boundary Layer

The geometry of the velocity field in a numerically simulated incompressible turbulent boundary layer over a flat plate at Re theta=670 has been studied using the invariants of the velocity gradient tensor. These invariants are computed at every grid point in the flow and used to form the discriminant. Of primary interest are those regions in the flow where the discriminant is positive; regions where, according to the characteristic equation, the eigenvalues of the velocity gradient tensor are complex. An observer moving with a frame of reference which is attached to a fluid particle lying within such a region would see a local flow pattern of the type stable-focus-stretching or unstable-focus-compressing. When the flow is visualized this way, continuous, connected, large-scale structures are revealed that extend from the point just below the buffer layer out to the beginning of the wake region. These structures are aligned with the mean shear close to the wall and arch in the cross-stream direction away from the wall. In some cases the structures observed are very similar to to the hairpin eddy vision of boundary layer structure proposed by Theodorsen. That the structure of the flow is revealed more effectively by the discriminant rather than by the vorticity is important and adds support to recent observations of the discriminant in a channel flow simulation. Of particular importance is the fact that the procedure does not require the use of an arbitrary threshold in the discriminant. Further analysis using computer flow visualization shows a high degree of spatial correlation between regions of positive discriminant, extreme negative pressure fluctuations and large instantaneous values of Reynolds shear stress.

Kline, Stephen↗