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At least 793 records · Page 44

eFESTA: Ensemble Feature Exploration with Surface Density Estimates

We propose surface density estimate (SDE) to model the spatial distribution of surface features-isosurfaces, ridge surfaces, and streamsurfaces-in 3D ensemble simulation data. The inputs of SDE computation are surface features represented as polygon meshes, and no field datasets are required (e.g., scalar fields or vector fields). The SDE is defined as the kernel density estimate of the infinite set of points on the input surfaces and is approximated by accumulating the surface densities of triangular patches. We also propose an algorithm to guide the selection of a proper kernel bandwidth for SDE computation. An ensemble Feature Exploration method based on Surface densiTy EstimAtes (eFESTA) is then proposed to extract and visualize the major trends of ensemble surface features. For an ensemble of surface features, each surface is first transformed into a density field based on its contribution to the SDE, and the resulting density fields are organized into a hierarchical representation based on the pairwise distances between them. The hierarchical representation is then used to guide visual exploration of the density fields as well as the underlying surface features. We demonstrate the application of our method using isosurface in ensemble scalar fields, Lagrangian coherent structures in uncertain unsteady flows, and streamsurfaces in ensemble fluid flows.

Computational modeling↗

Effects of group size and group density on trade–offs in resource selection by a group–territorial central–place foraging woodpecker

Trade-offs in resource selection by central-place foragers are driven by the need to balance the benefits of selecting resources against the costs of travel from the central place. For group-territorial central-place foraging birds, trade-offs in resource selection are likely to be complicated by a competitive advantage for larger groups at high group density that may limit accessibility of high-quality distant resources to small groups. We used the group-territorial, central-place foraging Red-cockaded Woodpecker Leuconotopicus borealis (RCW) as a case study to test predictions that increases in group density lead to differences in foraging distances and resource selection for groups of different sizes. We used GPS tracking and LiDAR-derived habitat data to model effects of group size on foraging distances and selection for high-quality pines (≥ 35.6 cm diameter at breast height (dbh)) and lower quality pines (25.4–35.6 cm dbh) by RCW groups across low ( n = 14), moderate ( n = 10) and high group density ( n = 10) conditions. At low and moderate group density, all RCW groups selected distant high-quality pines in addition to those near the central place because competition for resources was low. In contrast, at high group density, larger groups travelled further to select high-quality pines, whereas smaller groups selected high-quality pines only when they were close to the central place and, conversely, were more likely to select lower quality pines at greater distances from the central place. Selection for high-quality pines only when close to the cavity tree cluster at high group density is important to long-term fitness of small RCW groups because it allows them to maximize benefits from both territorial defence and selecting high-quality resources while minimizing costs of competition. Furthermore these relationships suggest that intraspecific competition at high group density entails substantive costs to smaller groups of territorial central-place foragers by limiting accessibility of distant high-quality foraging resources.

60 APPLIED LIFE SCIENCES↗

MO-F-CAMPUS-J-04: Tissue Segmentation-Based MR Electron Density Mapping Method for MR-Only Radiation Treatment Planning of Brain

Purpose: Automatically derive electron density of tissues using MR images and generate a pseudo-CT for MR-only treatment planning of brain tumours. Methods: 20 stereotactic radiosurgery (SRS) patients’ T1-weighted MR images and CT images were retrospectively acquired. First, a semi-automated tissue segmentation algorithm was developed to differentiate tissues with similar MR intensities and large differences in electron densities. The method started with approximately 12 slices of manually contoured spatial regions containing sinuses and airways, then air, bone, brain, cerebrospinal fluid (CSF) and eyes were automatically segmented using edge detection and anatomical information including location, shape, tissue uniformity and relative intensity distribution. Next, soft tissues - muscle and fat were segmented based on their relative intensity histogram. Finally, intensities of voxels in each segmented tissue were mapped into their electron density range to generate pseudo-CT by linearly fitting their relative intensity histograms. Co-registered CT was used as a ground truth. The bone segmentations of pseudo-CT were compared with those of co-registered CT obtained by using a 300HU threshold. The average distances between voxels on external edges of the skull of pseudo-CT and CT in three axial, coronal and sagittal slices with the largest width of skull were calculated. The mean absolute electron density (in Hounsfield unit) difference of voxels in each segmented tissues was calculated. Results: The average of distances between voxels on external skull from pseudo-CT and CT were 0.6±1.1mm (mean±1SD). The mean absolute electron density differences for bone, brain, CSF, muscle and fat are 78±114 HU, and 21±8 HU, 14±29 HU, 57±37 HU, and 31±63 HU, respectively. Conclusion: The semi-automated MR electron density mapping technique was developed using T1-weighted MR images. The generated pseudo-CT is comparable to that of CT in terms of anatomical position of tissues and similarity of electron density assignment. This method can allow MR-only treatment planning.

60 APPLIED LIFE SCIENCES↗

Multifactorial genetic control and magnesium levels govern the production of a Streptomyces antibiotic with unusual cell density dependence

Streptomyces bacteria are renowned both for their antibiotic production capabilities and for their cryptic metabolic potential. Their metabolic repertoire is subject to stringent genetic control, with many of the associated biosynthetic gene clusters being repressed by the conserved nucleoid-associated protein Lsr2. In an effort to stimulate new antibiotic production in wild Streptomyces isolates, we leveraged the activity of an Lsr2 knockdown construct and successfully enhanced antibiotic production in the wild Streptomyces isolate WAC07094. We determined that this new activity stemmed from increased levels of the angucycline-like family member saquayamycin. Saquayamycin has both antibiotic and anti-cancer activities, and intriguingly, beyond Lsr2-mediated repression, we found saquayamycin production was also suppressed at high density on solid or in liquid growth media; its levels were greatest in low-density cultures. This density-dependent control was exerted at the level of the cluster-situated regulatory gene sqnR and was mediated in part through the activity of the PhoRP two-component regulatory system, where deleting phoRP led to both constitutive antibiotic production and sqnR expression. This suggests that PhoP functions to repress the expression of sqnR at high cell density. We further discovered that magnesium supplementation could alleviate this density dependence, although its action was independent of PhoP. Finally, we revealed that the nitrogen-responsive regulators GlnR and AfsQ1 could relieve the repression exerted by Lsr2 and PhoP. Intriguingly, we found that this low density-dependent production of saquayamycin was not unique to WAC07094; saquayamycin production by another wild isolate also exhibited low-density activation, suggesting that this spatial control may serve an important ecological function in their native environments.

59 BASIC BIOLOGICAL SCIENCES↗

On the density of states of disordered epitaxial graphene

The study is concerned with two types of disordered epitaxial graphene: (i) graphene with randomly located carbon vacancies and (ii) structurally amorphous graphene. The former type is considered in the coherent potential approximation, and for the latter type, a model of the density of states is proposed. The effects of two types of substrates, specifically, metal and semiconductor substrates are taken into account. The specific features of the density of states of epitaxial graphene at the Dirac point and the edges of the continuous spectrum are analyzed. It is shown that vacancies in epitaxial graphene formed on the metal substrate bring about logarithmic nulling of the density of states of graphene at the Dirac point and the edges of the continuous spectrum. If the Dirac point corresponds to the middle of the band gap of the semiconductor substrate, the linear trend of the density of states to zero in the vicinity of the Dirac point in defect-free graphene transforms into a logarithmic decrease in the presence of vacancies. In both cases, the graphene-substrate interaction is assumed to be weak (quasi-free graphene). In the study of amorphous epitaxial graphene, a simple model of free amorphous graphene is proposed as the initial model, in which account is taken of the nonzero density of states at the Dirac point, and then the interaction of the graphene sheet with the substrate is taken into consideration. It is shown that, near the Dirac point, the quadratic behavior of the density of states of free amorphous graphene transforms into a linear dependence for amorphous epitaxial graphene. In the study, the density of states of free graphene corresponds to the low-energy approximation of the electron spectrum.

36 MATERIALS SCIENCE↗

Connecting the dots: Tracking galaxy evolution using constant cumulative number density at 3 ≤ z ≤ 7

Using the cosmological smoothed particle hydrodynamical code GADGET-3, we make a realistic assessment of the technique of using constant cumulative number density as a tracer of galaxy evolution at high redshift. We find that over a redshift range of 3 ≤ z ≤ 7 one can on average track the growth of the stellar mass of a population of galaxies selected from the same cumulative number density bin to within ∼0.20 dex. Over the stellar mass range that we probe (10{sup 10.4}⩽M{sub s}/M{sub ⊙}⩽10{sup 10.8} at z = 3 and 10{sup 8.5}⩽M{sub s}/M{sub ⊙}⩽10{sup 9.6} at z = 7), one can reduce this bias by selecting galaxies based on an evolving cumulative number density. We find that this cumulative number density evolution exhibits a trend toward higher values which can be quantified by simple linear formulations of −0.10Δz for descendants and 0.12Δz for progenitors. Utilizing such an evolving cumulative number density increases the accuracy of descendant/progenitor tracking by a factor of ∼2. This result is in excellent agreement, within 0.10 dex, with abundance matching results over the same redshift range. However, we find that our more physically realistic cosmological hydrodynamic simulations produce a much larger scatter in descendant/progenitor stellar masses than previous studies, particularly when tracking progenitors. This large scatter makes the application of either the constant cumulative number density or evolving cumulative number density technique limited to average stellar masses of populations only, as the diverse mass assembly histories caused by stochastic physical processes such as gas accretion or mergers lead to an even larger scatter in other physical properties such as metallicity and star formation rate.

79 ASTRONOMY AND ASTROPHYSICS↗

NITROGEN CAN LIMIT OVERSTORY TREE GROWTH FOLLOWING EXTREME STAND DENSITY INCREASE IN A PONDEROSA PINE FOREST

Extreme stand density increases have occurred in ponderosa pine forests throughout the western U.S. since the early 20th Century, with adverse implications for growth, physiological functioning, and mortality risk. Identifying primary stressors on large, old overstory trees in dense forests can inform management decisions to promote resilience and survival. We tested the impact of stand density increase on overstory treering growth, and the relative influence of water and nitrogen, in an old-growth ponderosa pine forest subject to variable density increase. We measured annual tree-ring growth and carbon discrimination in trees before stand density increased, in a climatically-similar period post-density increase, and in recent transition to drought. We expected density-driven water stress to drive reduced tree-ring growth in overstory trees in dense stands. We found reduced growth and higher mortality in dense stands, but nitrogen rather than water constrained growth, as determined by carbon isotope discrimination in tree rings, leaf nitrogen concentration, and soil nitrogen supply. In dense stands, less available nitrogen limited photosynthetic rate, leading to reduced assimilation of intracellular 13C and higher discrimination with low tree-ring growth and a reduced relationship with climate. This unexpected result illustrates that a variety of limiting factors can influence forest dynamics, as density-driven nitrogen limitation interacts with water stress to influence tree growth and physiological functioning.

dendroecology, tree-ring width, limiting factors, ↗

Method for Measuring Dry Density of Compacted Bentonite Mixture Soil Using 3D Laser Scanner data - 19119

The bentonite mixture soil is planned to be used for the low-permeability layer of low-level radioactive waste (LLW) disposal facilities. The construction of the bentonite mixture soil is similar to that of normal soil construction, and the rolling pressure and/or vibration compaction are used. The quality control of construction is the same as normal soil work, and the construction management has to confirm that the compaction degree (that is ratio of the dry density to the modified proctor curve) is above specified value. As a method of measuring the dry density after construction, the conventional methods are the core cutter method and the sand replacement method. The measurement principle of these methods is simple and the reliability of the measurement value is high, but during measurements digging holes disturb the construction place, and the measurement duration is a disadvantage in these methods. Therefore, we developed a non-destructive method that can make measurements in a short time. The developed method uses the correlation between the density change and the layer thickness change before and after compaction, and estimates the density after compaction from the height change obtained from the survey results. However, since the material is compressed while the cross-sectional area spreads, this cross-sectional area change is also taken into consideration. By using the point cloud data of the 3D laser scanner surveying, it is possible to obtain almost continuous data in a short period of time. Corrected dry density values calculated by the above procedure ρ'{sub 3D} are generally consistent with dry density after compaction ρ{sub core} by the core cutter method. This method differs depending on the boundary conditions of the bottom and the side of the construction place. Then, the reliability of the method was evaluated by applying it to two boundary conditions and comparing it with the core cutter method. The proposed estimation method showed good agreement with the core cutter method. Therefore, it was confirmed that it is possible to estimate dry density with high reliability. Although this method needs to be used in set with core cutter method, the measurement frequency of the core cutter method can be reduced, and the measurement of a vast area can be done in a short time without disturbance. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Local and linear chemical reactivity response functions at finite temperature in density functional theory

We explore the local and nonlocal response functions of the grand canonical potential density functional at nonzero temperature. In analogy to the zero-temperature treatment, local (e.g., the average electron density and the local softness) and nonlocal (e.g., the softness kernel) intrinsic response functions are defined as partial derivatives of the grand canonical potential with respect to its thermodynamic variables (i.e., the chemical potential of the electron reservoir and the external potential generated by the atomic nuclei). To define the local and nonlocal response functions of the electron density (e.g., the Fukui function, the linear density response function, and the dual descriptor), we differentiate with respect to the average electron number and the external potential. The well-known mathematical relationships between the intrinsic response functions and the electron-density responses are generalized to nonzero temperature, and we prove that in the zero-temperature limit, our results recover well-known identities from the density functional theory of chemical reactivity. Specific working equations and numerical results are provided for the 3-state ensemble model.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Phosphorus and carrier density of heavily n-type doped germanium

The threshold current density of n-type, tensile-strained Ge lasers strongly depends on the electron density. Although optical net gain analyses indicate that the optimum electron density should be on the order of 1 × 10{sup 20} cm{sup −3} to get the lowest threshold, it is not a simple task to increase the electron density beyond the mid range of 10{sup 19} cm{sup −3}. The present paper analyzes the phenomenon where electron density is not proportional to phosphorus donor density, i.e., “saturation” phenomenon, by applying the so-called amphoteric defect model. The analyses indicate that the saturation phenomenon can be well explained by the charge compensation between the phosphorus donors (P{sup +}) and doubly negative charged Ge vacancies (V{sup 2−}).

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Perdew-Zunger self-interaction correction: How wrong for uniform densities and large- Z atoms?

Semilocal density functionals for the exchange-correlation energy of a many-electron system cannot be exact for all one-electron densities. In 1981, Perdew and Zunger (PZ) subtracted the fully nonlocal self-interaction error orbital-by-orbital, making the corrected functional exact for all collections of separated one-electron densities and making no correction to the exact functional. Although the PZ self-interaction correction (SIC) eliminates many errors of semilocal functionals, it is often worse for equilibrium properties of sp-bonded molecules and solids. Nonempirical semilocal functionals are usually designed to be exact for electron gases of uniform density and, thus, also make 0% error for neutral atoms in the limit of large atomic number Z, but PZ SIC is not so designed. For localized SIC orbitals, we show analytically that the local spin density approximation (LSDA)-SIC correlation energy per electron of the uniform gas in the high-density limit makes an error of -50% in the spin-unpolarized case and -100% in the fully spin-polarized case. Then we extrapolate from the Ne, Ar, Kr, and Xe atoms to estimate the relative errors of the PZ SIC exchange-correlation energies (with localized SIC orbitals) in the limit of large atomic number: about +5.5% for the LSDA-SIC and about -3.5% for nonempirical generalized gradient [Perdew-Burke-Ernzerhof (PBE)-SIC] and meta-generalized gradient strongly constrained and appropriately normed (SCAN)-SIC approximations. Finally, the SIC errors are considerably larger than those that have been estimated for LSDA-SIC by approximating the localized SIC orbitals for the uniform gas and may explain the errors of PZ SIC for equilibrium properties, opening the door to a generalized SIC that is more widely accurate.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Radial evolution of the intermittency of density fluctuations in the fast solar wind

We study the radial evolution of the intermittency of density fluctuations in the fast solar wind. The study is performed by analyzing the plasma density measurements provided by Helios 2 in the inner heliosphere between 0.3 and 0.9 AU. The analysis is carried out by means of a complete set of diagnostic tools, including the flatness factor at different timescales to estimate intermittency, the Kolmogorov-Smirnov test to estimate the degree of intermittency, and the Fourier transform to estimate the power spectral densities of these fluctuations. Density fluctuations within the fast wind are rather intermittent and their level of intermittency, together with the amplitude of intermittent events, decreases with the distance from the Sun, at odds with the intermittency of both magnetic field and all other plasma parameters. Furthermore, the intermittent events are strongly correlated, exhibiting temporal clustering. This indicates that the mechanism underlying their generation departs from a time-varying Poisson process. A remarkable, qualitative similarity with the behavior of plasma density fluctuations obtained from a numerical study of the nonlinear evolution of parametric instability in the solar wind supports the idea that this mechanism has an important role in governing density fluctuations in the inner heliosphere.

79 ASTRONOMY AND ASTROPHYSICS↗

Joint constraints on galaxy bias and σ{sub 8} through the N-pdf of the galaxy number density

We present a full description of the N-probability density function of the galaxy number density fluctuations. This N-pdf is given in terms, on the one hand, of the cold dark matter correlations and, on the other hand, of the galaxy bias parameter. The method relies on the assumption commonly adopted that the dark matter density fluctuations follow a local non-linear transformation of the initial energy density perturbations. The N-pdf of the galaxy number density fluctuations allows for an optimal estimation of the bias parameter (e.g., via maximum-likelihood estimation, or Bayesian inference if there exists any a priori information on the bias parameter), and of those parameters defining the dark matter correlations, in particular its amplitude (σ{sub 8}). It also provides the proper framework to perform model selection between two competitive hypotheses. The parameters estimation capabilities of the N-pdf are proved by SDSS-like simulations (both, ideal log-normal simulations and mocks obtained from Las Damas simulations), showing that our estimator is unbiased. We apply our formalism to the 7th release of the SDSS main sample (for a volume-limited subset with absolute magnitudes M{sub r} ≤ −20). We obtain b-circumflex = 1.193 ± 0.074 and σ-bar{sub 8} = 0.862 ± 0.080, for galaxy number density fluctuations in cells of the size of 30h{sup −1}Mpc. Different model selection criteria show that galaxy biasing is clearly favoured.

79 ASTRONOMY AND ASTROPHYSICS↗

Fermions at finite density in the path integral approach

Abstract We study relativistic fermionic systems in 3 + 1 spacetime dimensions at finite chemical potential and zero temperature, from a path-integral point of view. We show how to properly account for theiεterm that projects on the finite density ground state, and compute the path integral analytically for free fermions in homogeneous external backgrounds, using complex analysis techniques. As an application, we show that the U(1) symmetry is always linearly realized for free fermions at finite charge density, differently from scalars. We study various aspects of finite density QED in a homogeneous magnetic background. We compute the free energy density, non-perturbatively in the electromagnetic coupling and the external magnetic field, obtaining the finite density generalization of classic results of Euler-Heisenberg and Schwinger. We also obtain analytically the magnetic susceptibility of a relativistic Fermi gas at finite density, reproducing the de Haas-van Alphen effect. Finally, we consider a (generalized) Gross-Neveu model forNinteracting fermions at finite density. We compute its non-perturbative effective potential in the large-Nlimit, and discuss the fate of the U(1) vector and$$ {\mathbb{Z}}_2^A $$ ℤ 2 A axial symmetries.

Physics↗

Density impact on performance of composite Si/graphite electrodes

The ability of alkali-substituted binders for composite Si and graphite negative electrodes to minimize capacity fade for lithium ion batteries is investigated. Polymer films and electrodes are described and characterized by FTIR following immersion in electrolyte (1:2 EC:DMC) for 24 h. FTIR analysis following electrode formation displayed similar alkali-ion dependent shifts in peak location suggesting that changes in the vibrational structure of the binder are maintained after electrode formation. The Si and graphite composite electrodes prepared using the alkali-substituted polyacrylates were also exposed to electrochemical cycling and it has been found that the performance of the Na-substituted binder is superior to a comparable density K-substituted system. However, in comparing performance across many different electrode densities attention needs to be placed on making comparisons at similar densities, as low density electrodes tend to exhibit lower capacity fade over cycling. This is highlighted by a 6% difference between a low density K-substituted electrode and a high density Na-substituted sample. As a result, this low variance between the two systems makes it difficult to quickly make a direct evaluation of binder performance unless electrode density is tightly controlled.

25 ENERGY STORAGE↗

Evaluating methane adsorbed film densities on activated carbon in dynamic systems

Dynamic methane loading and discharge experiments on a 40 L adsorbed natural gas tank containing 20.5 kg of monolithic carbon adsorbent have been combined with pore volume data from subcritical nitrogen isotherms to evaluate the density and dynamic properties associated with adsorbed methane. The time-dependent density of the adsorbed gas was evaluated for narrow and wide micropores. The temperature-dependent adsorbed film volume was determined from the Ono-Kondo model and compared with the total micropore volume. The resulting adsorbed methane density evolves in two distinct parts. The density increases rapidly during the beginning of the loading process and increases slowly after narrow pores reach saturation. The narrow pores’ saturated adsorbed gas densities ranged from 0.26 – 0.35 kg/L, depending on the choice of film volume. The density of wide micropores was found to be highly dependent on the loading procedure due to the expected temperature dependence of the film volume. During discharge, it was found that the wide micropores deplete early while narrow micropores deplete slowly which causes the less than 100% efficient discharges seen in adsorbed natural gas systems. These density models have been applied to accurately predict the gravimetric excess adsorption of other carbon adsorbents at 35 bar and explain previously published pressure and temperature relations during tank loading.

25 ENERGY STORAGE↗

Investigation of sol-gel feedstock additions and process variables on the density and microstructure of UN microspheres

The kernel of fully ceramic microencapsulated (FCM) fuel requires a material with high fissile density. For that reason, among others, UN is the appropriate chemical state for low enriched U fuel. The UN kernels are spheres ~800 μm in diameter made using a sol-gel process. The effect of additives on the chemistry and density of the UN microspheres are investigated in this work. Gadolinium nitrate hexahydrate, Gd 2 O 3 , B, SiO 2 and SiC were incorporated into the sol-gel broth in varying concentrations. It was found that Gd can serve as both a sintering aid and burnable poison when added to the sol-gel broth as a Gd(NO 3 ) 3 6H 2 O. However, even with the increased theoretical density of the UN microspheres, the U density was still too low for the FCM design that replaces UO 2 pellets in a commercial light water reactor. Silicon carbide and B were also successfully added but produced a lower density final product. Other sol-gel processing variables were investigated. In conclusion, the pour density of the sol-gel feedstock was found to influence the final converted UN kernel density.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Hot Hydrogen Exposure of U x Zr 1-x C y Nuclear Fuel: The Influence of Composition and Density

Refractory carbide nuclear fuel has been one of the most promising fuel candidates for space nuclear propulsion due to its high melting point, temperature stability, and compatibility in a hot hydrogen environment. In this study, U x Zr 1-x C y fuel was produced by means of a carbothermic reduction process in different UC compositions including 5,10, 20, and 30 at.% UC in the fuel compound. The powder feedstock was consolidated via direct current sintering with densities up to 97% of the theoretical density. The samples with different U x Zr 1-x C y compositions were exposed to hot hydrogen at 2600 K for a cumulative time of 300 min. The samples were characterized by SEM, XRD, density, and measured for mass losses. The high-density samples displayed improved performance in hot hydrogen by minimizing porous sites and reducing areas of direct contact with hydrogen gas, leading to reduced mass losses. Variations in sample density proved to induce large changes in mass loss rates, increasing them up to 90%. The compositions with higher UC content reported the largest mass losses in the study. The loss of uranium occurred primarily at the surfaces exposed to the hot hydrogen where changes in the lattice constant confirmed losses exceeding 50% of the initial UC content in higher compositions, specifically to U 0.3 Zr 0.7 C y . XRD analyses revealed the presence of UH 3 in U 0.3 Zr 0.7 C y suggesting that metallic uranium formed inside the sample as a product of carbon losses. High-density U x Zr x-1 C y fuel with UC concentrations at or below 20 at.% UC exhibited stability and negligible density changes in a high temperature hydrogen environment.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗