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At least 811 records · Page 45

Methods, apparatus and system for selective duplication of subtasks

A method for selective duplication of subtasks in a high-performance computing system includes: monitoring a health status of one or more nodes in a high-performance computing system, where one or more subtasks of a parallel task execute on the one or more nodes; identifying one or more nodes as having a likelihood of failure which exceeds a first prescribed threshold; selectively duplicating the one or more subtasks that execute on the one or more nodes having a likelihood of failure which exceeds the first prescribed threshold; and notifying a messaging library that one or more subtasks were duplicated.

97 MATHEMATICS AND COMPUTING↗

Methods, apparatus and system for selective duplication of subtasks

A method for selective duplication of subtasks in a high-performance computing system includes: monitoring a health status of one or more nodes in a high-performance computing system, where one or more subtasks of a parallel task execute on the one or more nodes; identifying one or more nodes as having a likelihood of failure which exceeds a first prescribed threshold; selectively duplicating the one or more subtasks that execute on the one or more nodes having a likelihood of failure which exceeds the first prescribed threshold; and notifying a messaging library that one or more subtasks were duplicated.

Andrade Costa, Carlos H.↗

Implementing efficient data compression and encryption in a persistent key-value store for HPC

Recently, persistent data structures, like key-value stores (KVSs), which are stored in a high-performance computing (HPC) system’s nonvolatile memory, provide an attractive solution for a number of emerging challenges like limited I/O performance. Data compression and encryption are two well-known techniques for improving several properties of such data-oriented systems. This article investigates how to efficiently integrate data compression and encryption into persistent KVSs for HPC with the ultimate goal of hiding their costs and complexity in terms of performance and ease of use. Our compression technique exploits deep memory hierarchy in an HPC system to achieve both storage reduction and performance improvement. Our encryption technique provides a practical level of security and enables sharing of sensitive data securely in complex scientific workflows with nearly imperceptible cost. We implement the proposed techniques on top of a distributed embedded KVS to evaluate the benefits and costs of incorporating these capabilities along different points in the dataflow path, illustrating differences in effective bandwidth, latency, and additional computational expense on Swiss National Supercomputing Centre’s Grand Tavé and National Energy Research Scientific Computing Center’s Cori.

97 MATHEMATICS AND COMPUTING↗

Qualifying for the Green500: Experience with the newest generation of supercomputers at LANL

The High Performance Computing Division of Los Alamos National Laboratory recently brought four new supercomputing platforms on line: Trinity with separate partitions built around the Haswell and Knights Landing CPU architectures for capability computing and Grizzly, Fire, and Ice for capacity computing applications. The power monitoring infrastructure of these machines is significantly enhanced over previous supercomputing generations at LANL and all were qualified at the highest level of the Green500 benchmark. Here, this paper discusses supercomputing at LANL, the Green500 benchmark, and notes on our experience meeting the Green500's reporting requirements.

97 MATHEMATICS AND COMPUTING↗

Pre-exascale accelerated application development: The ORNL Summit experience

High-performance computing (HPC) increasingly relies on heterogeneous architectures to achieve higher performance. In the Oak Ridge Leadership Facility (OLCF), Oak Ridge, TN, USA, this trend continues as its latest supercomputer, Summit, entered production in early 2019. The combination of IBM POWER9 CPU and NVIDIA V100 GPU, along with a fast NVLink2 interconnect and other latest technologies, pushes system performance to a new height and breaks the exascale barrier by certain measures. Due to Summit's powerful GPUs and much higher GPU–CPU ratio, offloading to accelerators becomes a requirement for any application, which intends to effectively use the system. To facilitate navigating a complex landscape of competing heterogeneous architectures, a collection of applications from a wide spectrum of scientific domains is selected for early adoption on Summit. In this article, the experience and lessons learned are summarized, in the hope of providing useful guidance to address new programming challenges, such as scalability, performance portability, and software maintainability, for future application development efforts on heterogeneous HPC systems.

97 MATHEMATICS AND COMPUTING↗

Distributed Macroscopic Traffic Simulation with Open Traffic Models

This paper presents OTM-MPI, an extension of the Open Traffic Models platform (OTM) for running macroscopic traffic simulations in high-performance computing environments. OTM-MPI represents the first open-source, distributed-memory, macroscopic simulation model developed for modern high performance parallel machines and large networks. Macroscopic simulations are appropriate for studying regional traffic scenarios when aggregate trends are of interest, rather than individual vehicle traces. They are also appropriate for studying the routing behavior of classes of vehicles, such as app-informed vehicles. The network partitioning was performed with METIS. Inter-process communication was done with MPI (message-passing interface). Results are provided for two networks: one realistic network which was obtained from Open Street Maps for Chattanooga, TN, and another larger synthetic grid network. The software recorded a speedups of 198x using 256 cores for Chattanooga, and 475x with 1,024 cores for the synthetic network.

macro-scopic traffic simulation↗

Grand challenges in the design, manufacture, and operation of future wind turbine systems

Abstract. Wind energy is foundational for achieving 100 % renewable electricity production, and significant innovation is required as the grid expands and accommodates hybrid plant systems, energy-intensive products such as fuels, and a transitioning transportation sector. The sizable investments required for wind power plant development and integration make the financial and operational risks of change very high in all applications but especially offshore. Dependence on a high level of modeling and simulation accuracy to mitigate risk and ensure operational performance is essential. Therefore, the modeling chain from the large-scale inflow down to the material microstructure, and all the steps in between, needs to predict how the wind turbine system will respond and perform to allow innovative solutions to enter commercial application. Critical unknowns in the design, manufacturing, and operability of future turbine and plant systems are articulated, and recommendations for research action are laid out. This article focuses on the many unknowns that affect the ability to push the frontiers in the design of turbine and plant systems. Modern turbine rotors operate through the entire atmospheric boundary layer, outside the bounds of historic design assumptions, which requires reassessing design processes and approaches. Traditional aerodynamics and aeroelastic modeling approaches are pressing against the limits of applicability for the size and flexibility of future architectures and flow physics fundamentals. Offshore wind turbines have additional motion and hydrodynamic load drivers that are formidable modeling challenges. Uncertainty in turbine wakes complicates structural loading and energy production estimates, both around a single plant and for downstream plants, which requires innovation in plant operations and flow control to achieve full energy capture and load alleviation potential. Opportunities in co-design can bring controls upstream into design optimization if captured in design-level models of the physical phenomena. It is a research challenge to integrate improved materials into the manufacture of ever-larger components while maintaining quality and reducing cost. High-performance computing used in high-fidelity, physics-resolving simulations offer opportunities to improve design tools through artificial intelligence and machine learning, but even the high-fidelity tools are yet to be fully validated. Finally, key actions needed to continue the progress of wind energy technology toward even lower cost and greater functionality are recommended.

17 WIND ENERGY↗

Overcoming Challenges to Continuous Integration in HPC

Continuous integration (CI) has become a ubiquitous practice in modern software development, with major code hosting services offering free automation on popular platforms. CI offers major benefits, as it enables detecting bugs in code prior to committing changes. While high-performance computing (HPC) research relies heavily on software, HPC machines are not considered “common” platforms. This presents several challenges that hinder the adoption of CI in HPC environments, making it difficult to maintain bug-free HPC projects, and resulting in adverse effects on the research community. Here we explore the challenges that impede HPC CI, such as hardware diversity, security, isolation, administrative policies, and non-standard authentication, environments, and job submission mechanisms. We propose several solutions that could enhance the quality of HPC software and the experience of developers. Implementing these solutions would require significant changes at HPC centers, but if these changes are made, it would ultimately enable faster and better science.

97 MATHEMATICS AND COMPUTING↗

NLR HPC Eagle Jobs Data and Additional Energy Metrics

Overview: Anonymized job-level records from the Eagle high-performance computing (HPC) system at the National Laboratory of the Rockies (NLR). Each record represents a Slurm batch job with scheduling metadata, resource requests, resource utilization, CPU/GPU energy consumption, and efficiency metrics. Sensitive fields (user, account, job name) are replaced with cryptographic hashes. System & Timeframe: Eagle was a 2,000-node, 8-petaflop system operated at NLR from 2019–2024. Data covers the full operational lifetime of the system. Slurm data was processed nightly; timestamps are in Mountain Time. Funding provided by the U.S. Department of Energy, EERE. Files: esif.hpc.eagle.job-anon.zip — Core anonymized job records (Hive-partitioned Parquet) esif.hpc.eagle.job-anon-energy-metrics.zip — Same records with additional iLO and Ganglia energy metrics datacard.md — Full dataset documentation ~13.8 million rows, 62 variables. Readable with PyArrow, pandas, DuckDB, Apache Spark, or any Parquet-compatible tool. Data Collection: Jobs collected via sacct through a pipeline: Eagle Jobs API → Redpanda → StreamSets → HPCMON API → PostgreSQL. Node-level power from iLO (HP Integrated Lights-Out); GPU power from Ganglia monitoring, joined to jobs via node lists and time ranges. Preprocessing: Anonymization of name, user, and account fields via cryptographic hashing Derived columns: queue_wait, cpu_eff, max_mem_eff Simplified job state mapping (e.g., "CANCELLED BY 12345" → "CANCELLED") QoS accounting rules (buy-in, standby, or Slurm QoS value) CPU energy estimated from TDP (200W, Intel Xeon Gold 6154, 18 cores) Timezone-aware columns (_tz) sourced from LEX accounting database to correctly handle DST transitions Key Variables: Scheduling: job_id, partition, state_simple, submit_time_tz, start_time_tz, end_time_tz, queue_waitResources: nodes_req/used, processors_req/used, memory_req, wallclock_req/used, gpus_requested Efficiency: cpu_eff, max_mem_eff Energy: cpu_energy_tdp_estimated_max/used_watt_hours, node_energy_total_watt_hours (iLO), gpu0/1_energy_total_watt_hours (Ganglia) Partitions: bigmem, bigmem-8600, bigscratch, csc, dav, ddn, debug, gpu, haswell, long, mono, short, standard Job States: CANCELLED, COMPLETED, FAILED, NODE_FAIL, OUT_OF_MEMORY, PENDING, RUNNING, TIMEOUT QoS Levels: Unknown, normal, buy-in, debug, penalty, high, standby Important Notes: Non-_tz timestamp columns may be off by one hour across DST boundaries; use _tz columns for time difference calculations Energy fields are null for jobs without monitoring coverage Job step records and raw Slurm JSONB fields are excluded from this extract Do not attempt to re-identify individuals from hashed fields

97 MATHEMATICS AND COMPUTING↗

Institute for Ultralscale Visualization (Final Report)

The SciDAC Institute for Ultrascale Visualization brought together leading experts from visualization, high-performance computing, and science application areas to make advanced visualization solutions for SciDAC scientists and the broader community. Over the five-year project, the Institute introduced many new enabling visualization techniques, which have significantly enhanced scientists’ ability to validate their simulations, interpret their data, and communicate with others about their work and findings. This Institute project involved a large number of junior and student researchers, who received the opportunities to work on some of the most challenging science applications and gain access to the most powerful high-performance computing facilities in the world. They were readily trained and prepared for facing the greater challenges presented by extreme-scale computing. The Institute’s outreach efforts, through publications, workshops and tutorials, successfully disseminated the new knowledge and technologies to the SciDAC and the broader scientific communities. The scientific findings and experience of the Institute team helped plan the SciDAC3 program.

97 MATHEMATICS AND COMPUTING↗

Petascale supercomputing to accelerate the design of high-temperature alloys

Recent progress in high-performance computing and data informatics has opened up numerous opportunities to aid the design of advanced materials. Herein, we demonstrate a computational workflow that includes rapid population of high-fidelity materials datasets via petascale computing and subsequent analyses with modern data science techniques. We use a first-principles approach based on density functional theory to derive the segregation energies of 34 microalloying elements at the coherent and semi-coherent interfaces between the aluminium matrix and the θ '-Al 2 Cu precipitate, which requires several hundred supercell calculations. We also perform extensive correlation analyses to identify materials descriptors that affect the segregation behaviour of solutes at the interfaces. Finally, we show an example of leveraging machine learning techniques to predict segregation energies without performing computationally expensive physics-based simulations. As a result, the approach demonstrated in the present work can be applied to any high-temperature alloy system for which key materials data can be obtained using high-performance computing.

36 MATERIALS SCIENCE↗

Thermosyphon Cooler Hybrid System for Water Savings in an Energy-Efficient HPC Data Center: Results from 24 Months and the Impact on Water Usage Effectiveness

In August 2016, the National Renewable Energy Laboratory (NREL) installed a thermosyphon hybrid cooling system to reduce water usage in its already extremely energy-efficient High-Performance Computing (HPC) Data Center. In its first year of use, the system saved 4,400 m3 (1.16 million gal) of water, and 7,950 m3 (2.10 million gal) during a 2-year period, cutting the use of water in the data center by about one-half. NREL's 930-m2 (10,000-ft2) HPC Data Center is often called the most energy-efficient data center in the world: it has achieved a trailing 12-month average power usage effectiveness of 1.034, and it features a chiller-less design, component-level warm-water liquid cooling, and waste heat capture and reuse. NREL considered the amount of water used by the cooling towers to be counter to the laboratory's sustainability mission, so a team of researchers from NREL, Sandia National Laboratories (Sandia), and Johnson Controls integrated the BlueStream thermosyphon cooler (TSC) - an advanced dry cooler that uses refrigerant in a passive cycle to dissipate heat - on the roof of NREL's Energy Systems Integration Facility, the building that houses the HPC Data Center. In combination with the existing cooling towers, the TSC forms an extremely water- and cost-efficient cooling system. In its first year of operation, on-site water usage effectiveness (WUE) was 0.70 L/kWh. In comparison, the WUE would be 1.27 L/kWh if NREL had continued using only heat-recovery and cooling towers. This on-site water savings was accomplished without negatively impacting the energy-efficient operation of the HPC Data Center. The TSC system technology has the potential for application in data centers around the world, and it is currently being implemented by Sandia. center by about one-half. NREL's 930-m2 (10,000-ft2) HPC Data Center is often called the most energy-efficient data center in the world: it has achieved a trailing 12-month average power usage effectiveness of 1.034, and it features a chiller-less design, component-level warm-water liquid cooling, and waste heat capture and reuse. NREL considered the amount of water used by the cooling towers to be counter to the laboratory's sustainability mission, so a team of researchers from NREL, Sandia National Laboratories (Sandia), and Johnson Controls integrated the BlueStream thermosyphon cooler (TSC) - an advanced dry cooler that uses refrigerant in a passive cycle to dissipate heat - on the roof of NREL's Energy Systems Integration Facility, the building that houses the HPC Data Center. In combination with the existing cooling towers, the TSC forms an extremely water- and cost-efficient cooling system. In its first year of operation, on-site water usage effectiveness (WUE) was 0.70 L/kWh. In comparison, the WUE would be 1.27 L/kWh if NREL had continued using only heat-recovery and cooling towers. This on-site water savings was accomplished without negatively impacting the energy-efficient operation of the HPC Data Center. The TSC system technology has the potential for application in data centers around the world, and it is currently being implemented by Sandia.

97 MATHEMATICS AND COMPUTING↗

Onward to Petaflops Computing

With programs such as the US High Performance Computing and Communications Program (HPCCP), the attention of scientists and engineers worldwide has been focused on the potential of very high performance scientific computing, namely systems that are hundreds or thousands of times more powerful than those typically available in desktop systems at any given point in time. Extending the frontiers of computing in this manner has resulted in remarkable advances, both in computing technology itself and also in the various scientific and engineering disciplines that utilize these systems. Within the month or two, a sustained rate of 1 Tflop/s (also written 1 teraflops, or 10(exp 12) floating-point operations per second) is likely to be achieved by the 'ASCI Red' system at Sandia National Laboratory in New Mexico. With this objective in sight, it is reasonable to ask what lies ahead for high-end computing.

Bailey, David H.↗

An Optimizing Compiler for Petascale I/O on Leadership Class Architectures

In high-performance computing systems, parallel I/O architectures usually have very complex hierarchies with multiple layers that collectively constitute an I/O stack, including high-level I/O libraries such as PnetCDF and HDF5, I/O middleware such as MPI-IO, and parallel file systems such as PVFS and Lustre. Our project explored automated instrumentation and compiler support for I/O intensive applications. Our project made significant progress towards understanding the complex I/O hierarchies of high-performance storage systems (including storage caches, HDDs, and SSDs), and designing and implementing state-of-the-art compiler/runtime system technology that targets I/O intensive HPC applications that target leadership class machine. This final report summarizes the major achievements of the project and also points out promising future directions.

97 MATHEMATICS AND COMPUTING↗

Advanced Computing Annual Report 2022

National Renewable Energy Laboratory's (NREL) high-performance computing (HPC), efficient data center operation, and state-of-the-art data visualization powered over 300 clean energy projects in Fiscal Year 2022 (FY22). 555 scientists and engineers utilized HPC resources to assess and integrate data into their research. The report highlights the arrival of new HPC Kestrel in 2023, the contributions of the Insight Center, and researchers looking into bias in artificial intelligence, alongside key research collaborations using advanced computing.

advanced computing↗

Uncertainty quantification for nuclear density functional theory and information content of new measurements

Statistical tools of uncertainty quantification can be used to assess the information content of measured observables with respect to present-day theoretical models, to estimate model errors and thereby improve predictive capability, to extrapolate beyond the regions reached by experiment, and to provide meaningful input to applications and planned measurements. To showcase new opportunities offered by such tools, we make a rigorous analysis of theoretical statistical uncertainties in nuclear density functional theory using Bayesian inference methods. By considering the recent mass measurements from the Canadian Penning Trap at Argonne National Laboratory, we demonstrate how the Bayesian analysis and a direct least-squares optimization, combined with high-performance computing, can be used to assess the information content of the new data with respect to a model based on the Skyrme energy density functional approach. Employing the posterior probability distribution computed with a Gaussian process emulator, we apply the Bayesian framework to propagate theoretical statistical uncertainties in predictions of nuclear masses, two-neutron dripline, and fission barriers. Overall, we find that the new mass measurements do not impose a constraint that is strong enough to lead to significant changes in the model parameters. In addition, the example discussed in this study sets the stage for quantifying and maximizing the impact of new measurements with respect to current modeling and guiding future experimental efforts, thus enhancing the experiment-theory cycle in the scientific method.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

End-System Network Interface Controller for 100 Gb/s Wide Area Networks: Final Report

In recent years, network bandwidth requirements have scaled multiple folds, pushing the need for the development of data exchange mechanisms at 100 Gb/s and beyond. High performance computing, climate modeling, large-scale storage, and collaborative scientific research are examples of applications that can greatly benefit by leveraging high bandwidth capabilities of the order of 100 Gb/s. Such requirements and advances in IEEE Ethernet standards, Optical Transport Unit4 (OTU4), and host-system interconnects demand a network infrastructure supporting throughput rates of the order of 100 Gb/s with a single wavelength. To address such a demand Acadia Optronics in collaboration with the University of New Mexico, proposed and developed a end-system Network Interface Controller (NIC) for the 100Gbps WANs. Acadia’s 100G NIC employs an FPGA based system with a high-performance processor interconnect (PCIe 3.0) and a high capacity optical transmission link (CXP) to provide data transmission at the rate of 100 Gbps.

100 Gb/s network interface controller↗