Search NASA⌕ Search

SEARCH · Search NASA

Results for “Parameter estimation using data”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 811 records · Page 45
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

Assessment of the Geomechanical Risks Associated with CO 2 Injection at the FutureGen 2.0 Site: Application of the State of Stress Assessment Tool (SOSAT)

This report presents the results of the application of the State of Stress Assessment Tool (SOSAT) on the FutureGen 2.0 data set. SOSAT was developed as part of the National Risk Assessment Partnership (NRAP) project and provides a unique integrated framework for estimating the state of stress probability distribution at a given depth in the subsurface and evaluating the risk of induced shear and tensile failure resulting from the injection of carbon dioxide (CO 2 ). The approach implemented by SOSAT is based on two deterministic and widely used methods of determining the state of stress (i.e., stress polygon and one-dimensional tectonic-elastic approach). These methods have been modified using a probabilistic approach to account for uncertainties in the input parameters. The methodology proposed in SOSAT was demonstrated using the data obtained for the FutureGen 2.0 project located in the Illinois Basin. Although the FutureGen 2.0 project was suspended by the U.S. Department of Energy prior to the start of injection operations, the extensive characterization efforts undertaken at the storage site have yielded a considerable amount of valuable data about this part of the sedimentary basin. The FutureGen 2.0 storage site was designed to accommodate the injection of 1.1 million metric tons of CO 2 per year over a 20-year period. The injection of CO 2 and the associated pressure buildup in the reservoir is expected to alter the state of stress over the course of the injection. These changes in the initial stress state may affect fault stability and potentially lead to the unintentional creation of hydraulic fractures, which could pose a leakage risk if not contained within the reservoir. Assessing these risks is critical to making informed decisions about the characterization, management of the injection operation, and monitoring of the storage site. The data required by SOSAT for the geomechanical assessment of the FutureGen 2.0 site were identified, and the methodology proposed in SOSAT was followed to evaluate the probability of reactivating critically oriented faults or potentially creating hydraulic fractures in the reservoir. The results of the geomechanical analysis performed using the SOSAT led to the following conclusions. 1. The probability distribution of the state of stress indicates significant uncertainties in the magnitude of the maximum horizontal stress S Hmax , while the minimum horizontal stress S hmin is well constrained by the stress measurements conducted during the characterization efforts at the storage site. This uncertainty in the magnitude of S Hmax is a common challenge and has significant implications for geomechanical risk at sites like FutureGen 2.0 where a strike-slip tectonic regime exists. 2. The probability that the Mount Simon reservoir was initially critically stressed is relatively high—25%. When the pore pressure increases to the maximum allowable pressure permitted under the Underground Injection Control Class VI regulation of the FutureGen 2.0 project, the risk of shear failure approaches a probability of 43%. These relatively high probabilities reflect the current state of information about the geomechanical conditions in this part of the Illinois Basin. For future operations in this basin this should be a high characterization priority because it could significantly lower the risk of operations. 3. Based on the maximum injection pressure allowed in the UIC Class VI, the risk of unintentional hydraulic fracturing is limited. The risk of shear failure as determined by SOSAT is based on a very conservative approach assuming that critically oriented faults exist in the subsurface. While no faults have been formally identified at the FutureGen 2.0 site, the results obtained with SOSAT using the FutureGen 2.0 data set highlight the importance of integrating uncertainties in critical parameters to quantify geomechanical risks in a defensible way. Should SOSAT have been available at the time the characterization activities were being planned, more characterization efforts would have been implemented to reduce the uncertainties on the magnitude of the maximum horizontal stress, and to dismiss with confidence the potential existence of a critically-oriented fault in the reservoir (e.g., 3D seismic survey).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2018

Overhead longwave infrared hyperspectral material identification using radiometric models

Material detection algorithms used in hyperspectral data processing are computationally efficient but can produce relatively high numbers of false positives. Material identification performed as a secondary processing step on detected pixels can help mitigate false positives. A material identification processing chain for longwave infrared hyperspectral data of solid materials collected from airborne platforms is presented. The algorithms utilize unwhitened radiance data and Nelder–Meade numerical optimization to estimate the temperature, humidity, and ozone levels of the atmospheric profile. Pixel unmixing is done using constrained linear regression and Bayesian information criteria for model selection. The resulting identification product includes an optimal atmospheric profile and a full radiance material model that includes material temperature, abundance values, and several fit statistics. A logistic regression method utilizing the model parameters to improve identification is also presented. Furthermore, several examples are provided using modeled data at several noise levels.

58 GEOSCIENCES↗
DOE OSTI2021

DART-PFLOTRAN: An ensemble-based data assimilation system for estimating subsurface flow and transport model parameters

Ensemble-based Data Assimilation (EDA), based on the Monte Carlo approach, has been effectively applied to estimate model parameters through inverse modeling in subsurface flow and transport problems. However, implementation of EDA approach involves a complicated workflow that include setting up and executing ensemble forward model simulations, processing observations and model simulation results for parameter updates, and repeat for sequential or iterative EDA. To facilitate the management of such workflow and lower the barriers for adopting EDA-based parameter estimation in subsurface science, we develop a generic software frame-work linking the Data Assimilation Research Testbed (DART) with a massively parallel subsurface FLOw and TRANsport code PFLOTRAN. The new DART-PFLOTRAN leverages both the core data assimilation engines in DART and the computational power afforded by PFLOTRAN. In addition to the standard smoother and filtering options, DART-PFLOTRAN enables an iterative EDA workflow based on the Ensemble Smoother for Multiple Data Assimilation method (ES-MDA) to improve estimation accuracy for nonlinear forward problems. Here, we verify the implementation of ES-MDA in DART-PFLOTRAN using two synthetic cases designed to estimate static permeability and dynamic exchange fluxes across the riverbed, respectively, from continuous temperature measurements made across a depth profile. One-dimensional hydro-thermal simulations are performed in both cases to relate temperature responses with the parameters of interest. In the case of estimating dynamic parameters, we demonstrate the flexibility of DART-PFLOTRAN in automating sequential ES-MDA workflow, which will significantly reduce the time researchers spend on managing complex workflows in similar applications. Both studies yield accurate estimations of the parameters compared to their synthetic truth, while ES-MDA leads to more accurate estimation when a high level of nonlinearity exist between observed responses and unknown parameters. With a code base in Python and Fortran, DART-PFLOTRAN paves the way for applications in large-scale subsurface inverse modeling by automating the complex workflow of sequential ES-MDA that can be executed on various computing platforms.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Toward Improved Regional Hydrological Model Performance Using State-Of-The-Science Data-Informed Soil Parameters

Accurate soil moisture and streamflow data are an aspirational need of many hydrologically relevant fields. Model simulated soil moisture and streamflow hold promise but models require validation prior to application. Calibration methods are commonly used to improve model fidelity but misrepresentation of the true dynamics remains a challenge. In this study, we leverage soil parameter estimates from the Soil Survey Geographic (SSURGO) database and the probability mapping of SSURGO (POLARIS) to improve the representation of hydrologic processes in the Weather Research and Forecasting Hydrological modeling system (WRF-Hydro) over a central California domain. Our results show WRF-Hydro soil moisture exhibits increased correlation coefficients ( r ), reduced biases, and increased Kling-Gupta Efficiencies (KGEs) across seven in situ soil moisture observing stations after updating the model's soil parameters according to POLARIS. Compared to four well-established soil moisture data sets including Soil Moisture Active Passive data and three Phase 2 North American Land Data Assimilation System land surface models, our POLARIS-adjusted WRF-Hydro simulations produce the highest mean KGE (0.69) across the seven stations. More importantly, WRF-Hydro streamflow fidelity also increases, especially in the case where the model domain is set up with SSURGO-informed total soil thickness. The magnitude and timing of peak flow events are better captured, r increases across nine United States Geological Survey stream gages, and the mean KGE across seven of the nine gages increases from 0.12 to 0.66. Our pre-calibration parameter estimate approach, which is transferable to other spatially distributed hydrological models, can substantially improve a model's performance, helping reduce calibration efforts and computational costs.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

A Spectacular Viscoelastic Model Calibration for 828/D230/Alox Generated from Legacy Sandia Data

The nonlinear viscoelastic Spectacular model is calibrated to the thermo-mechanical behavior of 828/D230/Alox with an alox volume fraction of 20 %. Legacy experimental data from Sandia’s polymer properties database (PPD) is used to calibrate the model. Based on known densities of the epoxy 828/D230 and the alox filler, the alox volume fractions listed on the PPD were likely reported incorrectly. The alox volume fractions are recalculated here. Using the recalculated alox volume fractions, the PPD contains experimental data for 828/D230/Alox with alox volume fractions of 16 %, 24 %, and 33 %, so the thermo-mechanical behavior at 20 % alox volume fraction is estimated by interpolating between the bounding cases of of 16 % and 24 %. Because the Spectacularmodel can be fairly challenging to calibrate, the calibration procedure is described in detail. Several of the calibration steps involve inverse parameter identification, where an experiment is simulated and parameters are iteratively updated until the model response matches the experimental data. As the PPD does not fully describe all experimental procedures, the experimental simulations use assumed thermal and mechanical loading rates that are typical for the viscoelastic characterization of epoxies. Spectacular uses four independent relaxation functions related to volumetric (ƒ 1 ), shear (ƒ 2 ), thermal strain (ƒ 3 ), and thermal relaxations (ƒ 4 ). The previous SPEC model form, also known as the universal_polymer model, uses two independent relaxation functions related to volumetric and thermal relaxation (ƒ ν = ƒ 1 = ƒ 3 = ƒ 4 ) and shear relaxation (ƒ s = ƒ 2 ). The two constitutive choices are briefly evaluated here, where it is found that the four relaxation function approach of Spectacular was better suited for fitting the coefficient of thermal expansion during both heating and cooling.

36 MATERIALS SCIENCE↗
DOE OSTI2023

Short-term variation in leaf-level water use efficiency in a tropical forest

Here we report the representation of stomatal regulation of transpiration and CO 2 assimilation is key to forecasting terrestrial ecosystem responses to global change. Given its importance in determining the relationship between forest productivity and climate, accurate and mechanistic model representation of the relationship between stomatal conductance (g s ) and assimilation is crucial. We assess possible physiological and mechanistic controls on the estimation of the g 1 (stomatal slope, inversely proportional to water use efficiency) and g 0 (stomatal intercept) parameters, using diurnal gas exchange surveys and leaf level response curves of six tropical broadleaf evergreen tree species. g 1 estimated from ex-situ response curves averaged 50% less than g 1 estimated from survey data. While g 0 and g 1 varied between leaves of different phenological stages, the trend was not consistent among species. We identified a diurnal trend associated with g 1 and g 0 that significantly improved model projections of diurnal trends in transpiration. The accuracy of modelled g s can be improved by accounting for variation in stomatal behavior across diurnal periods, and between measurement approaches, rather than focusing on phenological variation in stomatal behavior. Additional investigation into the primary mechanisms responsible for diurnal variation in g 1 will be required to account for this phenomena in land surface models.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Probabilistic Groundwater Modeling of the RDX Plume at Los Alamos National Laboratory to Support Risk Assessment - 20359

A plume of the contaminant hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) with concentrations greater than the New Mexico tap water drinking standard (9.66 ppb) is present in the regional aquifer near the southwestern boundary of Los Alamos National Laboratory (LANL). A risk assessment is performed for exposure to regional aquifer groundwater, with long-term predictions of RDX concentrations provided by a calibrated, probabilistic, numerical fate and transport model. The structure of the model is hierarchical, with the RDX Regional Aquifer (RA) groundwater model acting as the primary tool for analysis of downgradient RDX concentrations. The RA model is deeply informed by the conceptual site model (CSM) and is calibrated using site RDX concentration data and hydraulic head measurements, along with other analyses. The model is calibrated using data through December 2019. Where data are scarce other lines of evidence are used to inform inputs, including the multiphase RDX Vadose Zone (VZ) model and Pipe and Disk analytical screening tool. Model inputs are described with informative prior distributions using a robust approach to development that incorporates all available lines of evidence for every parameter used as an input to the RA model. Calibration is performed using a classical nonlinear optimization routine, which is then used to initialize a Bayesian calibration. The Bayesian calibration constrains the uncertainty in the classical calibration, ultimately providing posterior distributions for all model parameters. The challenges of the calibration include high-dimensional parameter space, including spatially heterogeneous hydraulic conductivities, comparatively sparse data, and low RDX concentrations. Posterior parameter distributions developed in the calibration process are then used for stochastic predictive model runs into the future. The result of the forward runs is spatially and temporally explicit estimates of head and concentration with uncertainty at all points in space and time. The probabilistic modeling approach presented here includes innovative computational and statistical methods that leverage high-performance computing (HPC) resources. It makes use of prior modeling work performed at the chromium plume site in the central LANL area, with extensive updates. The risk assessment will ultimately be used to support decision-making at the site, using multiple appropriately weighted sources of information, as well as uncertainty, sensitivity, and value-of-information analyses. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2025

DESI DR1 Lyα 1D power spectrum: the optimal estimator measurement

The one-dimensional power spectrum P 1D of Lyα forest offers rich insights into cosmological and astrophysical parameters, including constraints on the sum of neutrino masses, warm dark matter models, and the thermal state of the intergalactic medium. We present the measurement of P 1D using the optimal quadratic maximum likelihood estimator applied to over 300,000 Lyα quasars from Data Release 1 (DR1) of the Dark Energy Spectroscopic Instrument (DESI) survey. This sample represents the largest to date for P 1D measurements and is larger than the Extended Baryon Oscillation Spectroscopic Survey (eBOSS) by a factor of 1.7. We conduct a meticulous investigation of instrumental and analysis systematics and quantify their impact on P 1D . This includes the development of a cross-exposure estimator that eliminates the need to model the pipeline noise and has strong potential for future P 1D measurements. We also present new insights into metal contamination through the 1D correlation function. Using a fitting function we measure the evolution of the Lyα forest bias with high precision: b F (z) = (-0.218 ± 0.002) × ((1 + z)/4) 2.96±0.06 . In a companion validation paper, we substantially extend our previous suite of CCD image simulations to quantify the pipeline's exquisite performance accurately. In another companion paper, we present DR1 P 1D measurements using the Fast Fourier Transform (FFT) approach to power spectrum estimation. These two measurements produce a forest bias parameter that differs by 2.2 sigma. However, our model is simplistic, so this disagreement will be investigated in future work.

Lyman alpha forest↗
DOE OSTI2022

Rain Drop Size Distributions Estimated from NOAA Snow-Level Radar Data

Using NOAA’s S-band High-Power Snow-Level Radar (HPSLR), a technique for estimating the rain drop size distribution (DSD) above the radar is presented. This technique assumes the DSD can be described by a four parameter, generalized gamma distribution (GGD). Using the radar’s measured average Doppler velocity spectrum and a value (assumed, measured, or estimated) of the vertical air motion w, an estimate of the GGD is obtained. Four different methods can be used to obtain w. One method that estimates a mean mass-weighted raindrop diameter D m from the measured reflectivity Z produces realistic DSDs compared to prior literature examples. These estimated DSDs provide evidence that the radar can retrieve the smaller drop sizes constituting the “drizzle” mode part of the DSD. Here, this estimation technique was applied to 19 h of observations from Hankins, North Carolina. Results support the concept that DSDs can be modeled using GGDs with a limited range of parameters. Further work is needed to validate the described technique for estimating DSDs in more varied precipitation types and to verify the vertical air motion estimates.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Dynamic calibration of differential equations using machine learning, with application to turbulence models

We present a methodology for calibration of parametric ordinary and partial differential equation models, using off-the-shelf software for back-propagation in Neural Networks (NN). As a prototypical example, we consider calibration of a Reynolds-averaged Navier-Stokes (RANS) turbulence closure model, against ground truth data from direct numerical simulations (DNS) of two different turbulent flows. Numerical time integration is represented as a custom NN, where only the RANS model parameters are trainable. A loss function is defined to quantify the mismatch between the NN prediction and the ground truth over a predefined, finite time integration window. This loss function is then minimized using a gradient descent method utilizing the back-propagation algorithm. Furthermore, this dynamic approach to training is to be contrasted with a static approach, wherein a least square regression estimate for parameters is obtained in the limit of an infinitesimal time integration window. In a first test of static and dynamic approaches against ground truth data generated by the model, the former proves to be significantly faster and more accurate than the latter at recovering the parameters. When both calibration approaches are tested against DNS data, for which it is known that the model cannot achieve a perfect fit, the static approach yields a good prediction only for short times, while the dynamic approach results in physical and stable predictions over the entire integration window. After optimization of the dynamic approach for time step, spatial resolution, stability, and physics-based constraints, we obtain a 50% improvement of outcomes over those obtained from the existing, manually calibrated set of parameters, demonstrating the merits of this systematic and automated procedure.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

P-V-T equation of state of boron carbide

We report the P-V-T equation of state measurements of B 4 C to 50 GPa and approximately 2500 K in laser-heated diamond anvil cells. We obtain an ambient temperature, third-order Birch–Murnaghan fit to the P-V data that yields a bulk modulus K 0 of 221(2) GPa and derivative, (dK/dP) 0 of 3.3(1). These were used in fits with both a Mie–Grüneisen–Debye model and a temperature-dependent, Birch–Murnaghan equation of state that includes thermal pressure estimated by thermal expansion (α) and a temperature-dependent bulk modulus (dK 0 /dT). The ambient pressure thermal expansion coefficient (α 0 + α 1 T), Grüneisen γ(V) = γ 0 (V/V 0 ) q and volume-dependent Debye temperature, were used as input parameters for these fits and found to be sufficient to describe the data in the whole P-T range of this study.

36 MATERIALS SCIENCE↗
DOE OSTI2017

An Improved Method to Measure the Cosmic Curvature

In this paper, we propose an improved model-independent method to constrain the cosmic curvature by combining the most recent Hubble parameter H ( z ) and supernovae Ia (SNe Ia) data. Based on the H ( z ) data, we first use the model-independent smoothing technique, Gaussian processes, to construct a distance modulus μ {sub H} ( z ), which is susceptible to the cosmic curvature parameter Ω{sub k}. In contrary to previous studies, the light-curve-fitting parameters, which account for the distance estimation of SN (μ {sub SN}( z )), are set free to investigate whether Ω {sub k} has a dependence on them. By comparing μ {sub H} ( z ) to μ {sub SN}(z), we put limits on Ω {sub k}. Our results confirm that Ω {sub k} is independent of the SN light-curve parameters. Moreover, we show that the measured Ω {sub k} is in good agreement with zero cosmic curvature, implying that there is no significant deviation from a flat universe at the current observational data level. We also test the influence of different H(z) samples and different Hubble constant H {sub 0} values, finding that different H(z) samples do not have a significant impact on the constraints. However, different H {sub 0} priors can affect the constraints of Ω {sub k} to some degree. The prior of H {sub 0} = 73.24 ± 1.74 km s{sup −1} Mpc{sup −1} gives a value of Ω {sub k}, a little bit above the 1 σ confidence level away from 0, but H{sub 0} = 69.6 ± 0.7 km s{sup −1} Mpc{sup −1} gives it below 1 σ .

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Effects of Improved 17 O Correction on Interlaboratory Agreement in Clumped Isotope Calibrations, Estimates of Mineral-Specific Offsets, and Temperature Dependence of Acid Digestion Fractionation

The clumped isotopic composition of carbonate-CO 2 (denoted Δ 47 ) is a function of carbonate formation temperature and in natural samples can act as a recorder of paleoclimate, burial, or diagenetic conditions. The absolute abundance of heavy isotopes in the universal standards VPDB and VSMOW (defined by four parameters: R 13 VPDB , R 17 VSMOW , R 18 VSMOW , and λ ) impact calculated Δ 47 values. In this work, we investigate whether use of updated and more accurate values for these parameters can remove observed interlaboratory differences in the measured T-Δ 47 relationship. Using the updated parameters, we reprocess 14 published calibration data sets measured in 11 different laboratories, representing many mineralogies, bulk compositions, sample types, reaction temperatures, and sample preparation and analysis methods. Exploiting this large composite data set ( n = 1,253 sample replicates), we investigate the possibility for a “universal” clumped isotope calibration. We find that applying updated parameters improves the T-Δ 47 relationship (reduces residuals) within most labs and improves overall agreement but does not eliminate all interlaboratory differences. We reaffirm earlier findings that different mineralogies do not require different calibration equations and that cleaning procedures, method of pressure baseline correction, and mass spectrometer type do not affect interlaboratory agreement. We also present new estimates of the temperature dependence of the acid digestion fractionation for Δ 47 (Δ* 25-X ), based on combining reprocessed data from four studies, and new theoretical equilibrium values to be used in calculation of the empirical transfer function. Overall, we have ruled out a number of possible causes of interlaboratory disagreement in the T-Δ 47 relationship, but many more remain to be investigated.

58 GEOSCIENCES↗
DOE OSTI2022

Bayesian estimation of the $S$ factor and thermonuclear reaction rate for 16 O(p, γ) 17 F

The 16 O(p, γ) 17 F reaction is the slowest hydrogen-burning process in the CNO mass region. Its thermonuclear rate sensitively impacts predictions of oxygen isotopic ratios in a number of astrophysical sites, including AGB stars. The reaction has been measured several times at low bombarding energies using a variety of techniques. The most recent evaluated experimental rates have a reported uncertainty of about 7.5% below 1 GK. However, the previous rate estimate represents a best guess only and was not based on rigorous statistical methods. We apply a Bayesian model to fit all reliable 16 O(p, γ) 17 F cross section data, and take into account independent contributions of statistical and systematic uncertainties. The nuclear reaction model employed is a single-particle potential model involving a Woods-Saxon potential for generating the radial bound state wave function. The model has three physical parameters, the radius and diffuseness of the Woods-Saxon potential, and the asymptotic normalization coefficients (ANCs) of the final bound state in 17 F. Here, we find that performing the Bayesian S -factor fit using ANCs as scaling parameters has a distinct advantage over adopting spectroscopic factors instead. Based on these results, we present the first statistically rigorous estimation of experimental 16 O(p, γ) 17 F reaction rates, with uncertainties (±4.2%) of about half the previously reported values.

6 ≤ A ≤ 19↗
DOE OSTI2026

Disorder-induced magnetoelastic behaviors of MnTexSbyBi1-x-y alloys

This dataset contains input and output files from density functional theory (DFT) simulations used to study the disorder-induced magnetoelastic behaviors of MnTexSbyBi1-x-y (0 ≤ x + y ≤ 1) alloys and their binary end members MnTe, MnSb, and MnBi. The alloys adopt the hexagonal NiAs-type (nickeline) structure and span ternary (MnTexSb1-x, MnTexBi1-x, MnBixSb1-x), and quaternary compositions across the full MnTe–MnSb–MnBi composition triangle. For each alloy composition, the dataset provides DFT calculations in three magnetic configurations: A-type antiferromagnetic (AFM), C-type AFM, and ferromagnetic (FM). Every magnetic configuration folder contains the fully relaxed crystal structure (CONTCAR), VASP input parameters (INCAR), and the main VASP output file (OUTCAR), from which total electronic energies, Mn magnetic moments, lattice parameters, and percent volume changes between magnetic states are extracted. These data are used to construct compositional phase diagrams, evaluate thermodynamic stability (formability), and map magnetoelastic responses across the alloy space. For A-type AFM and FM configurations, additional data are provided as follows: (i) FORCE_CONSTANTS and thermal_properties.yaml files at the top level of A-type_AFM/ and FM/ folders — present only for compositions marked with an asterisk (*) in Table I of the main text. These are derived from Phonopy finite-displacement calculations on full disordered 128-atom supercells and provide vibrational free energy, entropy (Svib)contribution from explicit disorder calculations. (Table I of the associated main manuscript) (ii) A VCA/ subfolder within A-type_AFM/ and FM/, containing FORCE_CONSTANTS and thermal_properties.yaml from Virtual Crystal Approximation phonon calculations (without spin-orbit coupling). VCA data are available for all compositions and are used to estimate vibrational contributions to the Gibbs free energy across the full composition space. (iii) A SOC/ subfolder containing CONTCAR, INCAR, and OUTCAR from spin-orbit coupling calculations, providing relativistic corrections to electronic energies and lattice parameters (Tables S2–S3 of the SM, and Table I of the main manuscript). (iv) A SOC/VCA/ subfolder containing FORCE_CONSTANTS and thermal_properties.yaml from VCA phonon calculations performed within the SOC framework, combining relativistic and vibrational thermodynamic corrections. The computed properties are used to map the AFM–FM magnetic crossover near MnTe0.75Sb0.25, demonstrate disorder- and spin-induced phonon broadening, identify a semiconductor-to-metal crossover, and quantify the pronounced magnetoelastic volume response near the magnetic phase boundary.

36 MATERIALS SCIENCE↗
DOE OSTI2016

DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks

Gene expression is controlled by the combinatorial effects of regulatory factors from different biological subsystems such as general transcription factors (TFs), cellular growth factors and microRNAs. A subsystem’s gene expression may be controlled by its internal regulatory factors, exclusively, or by external subsystems, or by both. It is thus useful to distinguish the degree to which a subsystem is regulated internally or externally–e.g., how non-conserved, species-specific TFs affect the expression of conserved, cross-species genes during evolution. We developed a computational method (DREISS, dreiss.gerteinlab.org) for analyzing the Dynamics of gene expression driven by Regulatory networks, both External and Internal based on State Space models. Given a subsystem, the “state” and “control” in the model refer to its own (internal) and another subsystem’s (external) gene expression levels. The state at a given time is determined by the state and control at a previous time. Because typical time-series data do not have enough samples to fully estimate the model’s parameters, DREISS uses dimensionality reduction, and identifies canonical temporal expression trajectories (e.g., degradation, growth and oscillation) representing the regulatory effects emanating from various subsystems. To demonstrate capabilities of DREISS, we study the regulatory effects of evolutionarily conserved vs. divergent TFs across distant species. In particular, we applied DREISS to the time-series gene expression datasets of C. elegans and D. melanogaster during their embryonic development. We analyzed the expression dynamics of the conserved, orthologous genes (orthologs), seeing the degree to which these can be accounted for by orthologous (internal) versus species-specific (external) TFs. We found that between two species, the orthologs have matched, internally driven expression patterns but very different externally driven ones. This is particularly true for genes with evolutionarily ancient functions (e.g. the ribosomal proteins), in contrast to those with more recently evolved functions (e.g., cell-cell communication). This suggests that despite striking morphological differences, some fundamental embryonic-developmental processes are still controlled by ancient regulatory systems.

Biochemistry & Molecular Biology↗
DOE OSTI2021

On the estimation of boundary layer heights: a machine learning approach

Abstract. The planetary boundary layer height (zi) is a key parameter used in atmospheric models for estimating the exchange of heat, momentum, and moisture between the surface and the free troposphere. Near-surface atmospheric and subsurface properties (such as soil temperature, relative humidity, etc.) are known to have an impact on zi. Nevertheless, precise relationships between these surface properties and zi are less well known and not easily discernible from the multi-year dataset. Machine learning approaches, such as random forest (RF), which use a multi-regression framework, help to decipher some of the physical processes linking surface-based characteristics to zi. In this study, a 4-year dataset from 2016 to 2019 at the Southern Great Plains site is used to develop and test a machine learning framework for estimating zi. Parameters derived from Doppler lidars are used in combination with over 20 different surface meteorological measurements as inputs to a RF model. The model is trained using radiosonde-derived zi values spanning the period from 2016 through 2018 and then evaluated using data from 2019. Results from 2019 showed significantly better agreement with the radiosonde compared to estimates derived from a thresholding technique using Doppler lidars only. Noteworthy improvements in daytime zi estimates were observed using the RF model, with a 50 % improvement in mean absolute error and an R2 of greater than 85 % compared to the Tucker method zi. We also explore the effect of zi uncertainty on convective velocity scaling and present preliminary comparisons between the RF model and zi estimates derived from atmospheric models.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Dark Energy Survey Year 3 results: calibration of lens sample redshift distributions using clustering redshifts with BOSS/eBOSS

ABSTRACT We present clustering redshift measurements for Dark Energy Survey (DES) lens sample galaxies used in weak gravitational lensing and galaxy clustering studies. To perform these measurements, we cross-correlate with spectroscopic galaxies from the Baryon Acoustic Oscillation Survey (BOSS) and its extension, eBOSS. We validate our methodology in simulations, including a new technique to calibrate systematic errors that result from the galaxy clustering bias, and we find that our method is generally unbiased in calibrating the mean redshift. We apply our method to the data, and estimate the redshift distribution for 11 different photometrically selected bins. We find general agreement between clustering redshift and photometric redshift estimates, with differences on the inferred mean redshift found to be below |Δz| = 0.01 in most of the bins. We also test a method to calibrate a width parameter for redshift distributions, which we found necessary to use for some of our samples. Our typical uncertainties on the mean redshift ranged from 0.003 to 0.008, while our uncertainties on the width ranged from 4 to 9 per cent. We discuss how these results calibrate the photometric redshift distributions used in companion papers for DES Year 3 results.

79 ASTRONOMY AND ASTROPHYSICS↗