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DOE OSTI2025

Decoding crops one cell at a time: from cell atlases to single-cell genetics

Understanding the mechanisms underlying key agricultural traits remains a central challenge in crop research, but recent advances in technologies are providing powerful tools to address this issue. Among these, single-cell and spatial transcriptomics have revealed tissue heterogeneity and spatial organization, offering unique insights into cellular gene expression dynamics and the coordinated activity of multiple cell types. These approaches help uncover how specific cell types contribute to agricultural traits and refine candidate loci lists through integration with trait-associated loci. Additionally, single-cell and spatial transcriptomics have the potential to serve as cell-level readout platforms integrating cellular perturbations, enabling high-throughput discovery of causal relationships between genotype and gene expression at the cellular level in plants. Successful implementation will accelerate the identification of key genetic variants for crop improvement. Furthermore we review lessons learned from application of single-cell screening in mammalian cells, highlight major technical and biological barriers to its use in plants, and outline potential strategies to overcome these challenges. Together, the widespread application and integration of single-cell and spatial transcriptomics with other technologies enable not only the descriptive cataloging of cell states but also the causal interrogation of sequence functions and regulatory networks at cell type resolution, ultimately advancing gene function studies and accelerating crop improvement.

Cellular heterogeneity↗

DOE OSTI2023

Magnetic frustration driven by conduction carrier blocking in Nd 2 Co 0.85 Si 2.88

The intermetallic compound Nd 2 Co 0.85 Si 2.88 having a triangular lattice could be synthesized in single phase only with defect crystal structure. Investigation through different experimental techniques indicate the presence of two magnetic transitions in the system. As verified experimentally and theoretically, the high-temperature transition $T_H$ ~ 140 K is associated with the development of ferromagnetic interaction between itinerant Co moments, whereas the low-temperature transition at $T_L$ ~ 6.5 K is due to the coupling among Nd–4$\textit{f}$ and Co–3$\textit{d}$ moments, which is antiferromagnetic in nature. Detailed studies of temperature-dependent dc magnetic susceptibility, field dependence of isothermal magnetization, nonequilibrium dynamical behavior, viz., magnetic relaxation, aging effect, magnetic-memory effect, and temperature dependence of heat capacity, along with density functional theory (DFT) calculations, suggest that the ground state is magnetically frustrated spin glass in nature, having competing magnetic interactions of equivalent energies. DFT results further reveal that the 3$\textit{d}$/5$\textit{d}$-conduction carriers are blocked in the system and act as a barrier for the 4$\textit{f}$–4$\textit{f}$ RKKY interactions, resulting in spin frustration. Presence of vacancy defects in the crystal are also conducive to the spin frustration. This is an unique mechanism of magnetic frustration, not emphasized so far in any of the ternary $R_2TX_3$ ($\textit{R}$ = rare earth, $\textit{T}$ = transition elements, and $\textit{X}$ = Si, Ge, In) type compounds. Due to the competing character of the itinerant 3$\textit{d}$ and localized 4$\textit{f}$ moments, the compound exhibits anomalous field dependence of magnetic coercivity. Further, the system also exhibits a considerable magnetic entropy change of –Δ$S_M$ ~ 13.3 J/kg K with a relative cooling power (RCP) of 220 J/kg and adiabatic temperature change $ΔT_{\text{ad}}$ of 6 K for magnetic field change of 70 kOe.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

NASA NTRS1987

Potential surfaces for O atom-polymer reactions

Ab initio quantum chemistry methods are used to study the energetics of interactions of O atoms with organic compounds. Polyethylene (CH2)n has been chosen as the model system to study the interactions of O(3P) and O(1D) atoms with polymers. In particular, H abstraction is investigated and polyethylene is represented by a C3 (propane) oligomeric model. The gradient method, as implemented in the GRADSCF package of programs, is used to determine the geometries and energies of products and reactants. The saddle point, barrier geometry is determined by minimizing the squares of the gradients of the potential with respect to the internal coordinates. To correctly describe the change in bonding during the reaction at least a two configuration MCSCF (multiconfiguration self consistent field) or GVB (generalized valence bond) wave function has to be used. Basis sets include standard Pople and Dunning sets, however, increased with polarization functions and diffuse p functions on both the C and O atoms. The latter is important due to the O(-) character of the wave function at the saddle point and products. Normal modes and vibrational energy levels are given for the reactants, saddle points and products. Finally, quantitative energetics are obtained by implementing a small CAS (complete active space) approach followed by limited configuration interaction (CI) calculations. Comparisons are made with available experimental data.

Laskowski, B. C.↗

NASA NTRS1995

Reliability assessment of multiple quantum well avalanche photodiodes

The reliability of doped-barrier AlGaAs/GsAs multi-quantum well avalanche photodiodes fabricated by molecular beam epitaxy is investigated via accelerated life tests. Dark current and breakdown voltage were the parameters monitored. The activation energy of the degradation mechanism and median device lifetime were determined. Device failure probability as a function of time was computed using the lognormal model. Analysis using the electron beam induced current method revealed the degradation to be caused by ionic impurities or contamination in the passivation layer.

Yun, Ilgu↗

NASA NTRS2018

Unmanned Aerial Systems (UAS) Integration into the National Airspace System (NAS)

NASA's Unmanned Aerial Systems (UAS) integration into the National Air Space (NAS) project has been working closely with the FAA and RTCA Special Committee 228 to identify and break down barriers to UAS integration. A focus of this work is on detect and avoid (DAA) technologies. A pilot has responsibility to see and avoid other aircraft and to remain "well clear," using their best judgment (Federal Aviation Regulations (FAR) Sec. 91.113). For UAS to perform this function, the see function is replaced by sensors to detect the other aircraft. Secondly, the pilot judgment of well clear has to be replaced by a mathematical expression. For Phase 1 of this effort, a well clear violation was defined if all three of these conditions are true: a) the horizontal clearance is less than 4000 ft., and b) the vertical clearance is less than 450 ft., and c) the time to loss of well clear is less than 35 seconds. This definition was developed with a great deal of community input and testing to ensure interoperability with Air Traffic Control (ATC) and pilots of manned aircraft. Appropriate guidance, alerting and displays were developed to allow UAS, with the appropriate sensors, to effectively maintain well clear. This work contributed to FAA Technical Standard Orders: TSO-C211, Detect and Avoid and TSO-C212, ATAR for Traffic Surveillance. Phase 2 of this work extends the operational environment to include the terminal area and lesser capable aircraft that might not have the payload capability to carry the RADAR defined in Phase 1. This session reports on work from Phase 1 and initial work in Phase 2.

UAS↗

NASA NTRS2018

Detect and Avoid: Efforts from NASA's UAS Integration into the NAS Project

Detect and Avoid (DAA)↗

DOE OSTI2022

App2Net: Moving App Functions to Network & a Case Study on Low-latency Feedback

Recent advances in programmable networks enable custom processing of data at hundreds of gigabits per second. These advances can boost the performance of many distributed applications. Yet the high-level languages used by application developers are different from the data plane programming languages (such as P4 and NPL) used by network equipment. This language barrier slows innovation. Our hourglass-shaped architectural solution aims to lower this language barrier. This enables the application developer community to leverage programmable networks for achieving better performance. In this paper we propose a JSON-based intermediate representation to bridge the gap between applications and in-network computing. We demonstrate an instance of the solution in the context of a low-latency feedback application that enables SQL-based data filtering in a P4-based programmable environment. We also present a prototype compiler to convert an intermediate representation in JSON to P4 source.

Sankaran, Ganesh↗

DOE OSTI2025

Selective carboxylation of alkenes with CO 2 to form unsaturated carboxylic acid on Sc-exchanged MFI zeolite

Utilization of CO 2 in chemical synthesis as C1 carbon feedstock to introduce a carboxylic group into alkene is valuable for producing unsaturated carboxylic acids. Selective carboxylation of alkenes at targeted positions can be used to regulate the production of such specific unsaturated carboxylic acids or functionalize hydrocarbon plastics that possess residual C=C double bonds. In this study, we investigated the carboxylation of 1-butene and 2-butene (as representative alkene) with CO 2 on Sc-exchanged MFI zeolites using density functional theory calculations. Here, we find that similar to ethylene, the carboxylation of butene is also rate-limited by the β–H transfer. We examined carboxylation at the C1 and C2 positions of 1-butene and cis and trans isomers for 2-butene. Based on activation barriers of the β–H transfer, our results demonstrate that Sc-MFI zeolite preferably carboxylates at the terminal position of butene. In the case of 2-butene, carboxylation of the trans isomer is more favorable than the cis isomer. Furthermore, We show that the energy of degenerate orbitals of C, O and H atoms (involved in the β–H transfer) in the metallalactone ring regulates the activation energy of the β–H transfer.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2025

Néel domain walls with bistable chirality in a perpendicularly magnetized ferrimagnetic insulator

Field-free spin-orbit torque-driven domain wall motion in magnetic thin films with perpendicular magnetic anisotropy (PMA) requires the domain walls to have Néel character. Conventionally, Néel domain walls are stabilized by the Dzyaloshinskii-Moriya interaction (DMI) in ultrathin films. Here, in a europium iron garnet thin film with PMA and an additional uniaxial in-plane anisotropy, we demonstrate two bistable Néel domain wall states in the absence of DMI, and the capability to toggle the wall states with an in-plane field pulse and consequently their directions of motion under a current pulse. We present a phase diagram for the bistable Néel domain wall states as a function of in-plane field pulse width and amplitude. By fitting the experimental data to an analytical model of Néel wall reversal through the nucleation and propagation of Bloch lines, we extract the length of the initial reversed domain wall segment and Bloch line nucleation energy barrier. Current-driven motion of in-plane anisotropy stabilized Néel walls is qualitatively different from that of DMI-stabilized ones owing to the different symmetry of the effective fields that stabilize the Néel configuration. Furthermore, we present a proof of principle demonstration for 2-bit random number generation based on the stochastic reversal of domain wall chirality. These results provide critical insight into the topological energy barrier of Bloch lines and identify paths towards domain wall-based memory and computing devices.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Accelerated discovery of a large family of quaternary chalcogenides with very low lattice thermal conductivity

The development of efficient thermal energy management devices such as thermoelectrics and barrier coatings often relies on compounds having low lattice thermal conductivity (κ l ). Here, we present the computational discovery of a large family of 628 thermodynamically stable quaternary chalcogenides, AMM'Q 3 (A = alkali/alkaline earth/post-transition metals; M/M' = transition metals, lanthanides; Q = chalcogens) using high-throughput density functional theory (DFT) calculations. We validate the presence of low κ l in these materials by calculating κ l of several predicted stable compounds using the Peierls–Boltzmann transport equation. Our analysis reveals that the low κ l originates from the presence of either a strong lattice anharmonicity that enhances the phonon-scatterings or rattler cations that lead to multiple scattering channels in their crystal structures. Our thermoelectric calculations indicate that some of the predicted semiconductors may possess high energy conversion efficiency with their figure-of-merits exceeding 1 near 600 K. Our predictions suggest experimental research opportunities in the synthesis and characterization of these stable, low κ l compounds.

36 MATERIALS SCIENCE↗

NASA NTRS1995

Thermal barrier coatings issues in advanced land-based gas turbines

The Department of Energy's Advanced Turbine Systems (ATS) program is aimed at fostering the development of a new generation of land-based gas turbine systems with overall efficiencies significantly beyond those of current state-of-the-art machines, as well as greatly increased times between inspection and refurbishment, improved environmental impact, and decreased cost. The proposed duty cycle of ATS machines will emphasize different criteria in the selection of materials for the critical components. In particular, thermal barrier coatings (TBC's) will be an essential feature of the hot gas path components in these machines. In fact, the goals of the ATS will require significant improvements in TBC technology, since these turbines will be totally reliant on TBC's, which will be required to function on critical components such as the first stage vanes and blades for times considerably in excess of those experienced in current applications. Issues that assume increased importance are the mechanical and chemical stability of the ceramic layer and of the metallic bond coat; the thermal expansion characteristics and compliance of the ceramic layer; and the thermal conductivity across the thickness of the ceramic layer. Obviously, the ATS program provides a very challenging opportunity for TBC's, and involves some significant opportunities to extend this technology. A significant TBC development effort is planned in the ATS program which will address these key issues.

Parks, William P.↗

DOE OSTI2024

Development and application of hybrid AIMD/cDFT simulations for atomic-to-mesoscale chemistry

Many important chemical processes involve reactivity and dynamics in complex solutions. Gaining a fundamental understanding of these reaction mechanisms is a challenging goal that requires advanced computational and experimental approaches. However, important techniques such as molecular simulation have limitations in terms of scales of time, length, and system complexity. Furthermore, among the currently available solvation models, there are very few designed to describe the interaction between the molecular scale and the mesoscale. To help address this challenge, here, we establish a novel hybrid approach that couples first-principles plane-wave density functional theory with classical density functional theory (cDFT). In this approach, a region of interest described by ab initio molecular dynamics (AIMD) interacts with the surrounding medium described using cDFT to arrive at a self-consistent ground state. cDFT is a robust but efficient mesoscopic approach to accurate thermodynamics of bulk electrolyte solutions over a wide concentration range (up to 2M concentrations). Benchmarking against commonly used continuum models of solvation, such as SMD, as well as experiments, demonstrates that our hybrid AIMD–cDFT method is able to produce reasonable solvation energies for a variety of molecules and ions. With this model, we also examined the solvent effects on a prototype S N 2 reaction of the nucleophilic attack of a chloride ion on methyl chloride in the solution. The resulting reaction pathway profile and the solution phase barrier agree well with experiment, showing that our AIMD/cDFT hybrid approach can provide insight into the specific role of the solvent on the reaction coordinate.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS2014

Turbulent Concentration of MM-Size Particles in the Protoplanetary Nebula: Scaled-Dependent Multiplier Functions

The initial accretion of primitive bodies (asteroids and TNOs) from freely-floating nebula particles remains problematic. Here we focus on the asteroids where constituent particle (read "chondrule") sizes are observationally known; similar arguments will hold for TNOs, but the constituent particles in those regions will be smaller, or will be fluffy aggregates, and are unobserved. Traditional growth-bysticking models encounter a formidable "meter-size barrier" [1] (or even a mm-cm-size barrier [2]) in turbulent nebulae, while nonturbulent nebulae form large asteroids too quickly to explain long spreads in formation times, or the dearth of melted asteroids [3]. Even if growth by sticking could somehow breach the meter size barrier, other obstacles are encountered through the 1-10km size range [4]. Another clue regarding planetesimal formation is an apparent 100km diameter peak in the pre-depletion, pre-erosion mass distribution of asteroids [5]; scenarios leading directly from independent nebula particulates to this size, which avoid the problematic m-km size range, could be called "leapfrog" scenarios [6-8]. The leapfrog scenario we have studied in detail involves formation of dense clumps of aerodynamically selected, typically mm-size particles in turbulence, which can under certain conditions shrink inexorably on 100-1000 orbit timescales and form 10-100km diameter sandpile planetesimals. The typical sizes of planetesimals and the rate of their formation [7,8] are determined by a statistical model with properties inferred from large numerical simulations of turbulence [9]. Nebula turbulence can be described by its Reynolds number Re = L/eta sup(4/3), where L = ETA alpha sup (1/2) the largest eddy scale, H is the nebula gas vertical scale height, and α the nebula turbulent viscosity parameter, and η is the Kolmogorov or smallest scale in turbulence (typically about 1km), with eddy turnover time tη. In the nebula, Re is far larger than any numerical simulation can handle, so some physical model is needed to extend the results of numerical simulations to nebula conditions.

protoplanetary nebula↗

DOE OSTI2024

Pseudocapacitance Facilitates the Electrocatalytic Reduction of Carbon Dioxide

Electroreduction of CO 2 to value-added products is a promising strategy for CO 2 reuse, where copper has a unique ability to produce oxygenates and C 2+ products. Unfortunately, the electronic factors making copper so unique are unknown, which limits the ability to design improved catalysts. By combining in situ surface-sensitive X-ray resonant photoelectron spectroscopy with density functional theory calculations, the complex electronic structure of copper is uncovered during the electrocatalytic reduction of CO 2 . It is found that the pseudocapacitive charging of copper, produced by the incorporation of protons and electrons into the subsurface, facilitates the activation of CO 2 , while simultaneously increasing the barrier for H-H coupling. The net result is that cathodic pseudocapacitive charge suppresses the hydrogen evolution reaction and promotes the production of hydrocarbons and oxygenated products on copper. These results represent a new paradigm in the understanding of CO 2 reduction, highlighting the key role of pseudocapacitive charge in the reaction.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2021

First-principles studies of the concentration-dependent tritium diffusion in the zirconium hydrides with and without Sn impurity

We performed first-principles calculations to study the 3 H diffusion in the zirconium hydrides with or without Sn impurity. Our results show that the formation of Zr 3 H x becomes preferable as the 3 H concentration increases. Based on the most stable configurations of Zr 3 H x (x = 0.5, 1.0, 1.5, 2.0), we studied the interstitial 3 H diffusion with or without Sn impurity. The results show that the interstitial 3 H diffusion becomes less probable in the hydrides with a higher 3 H concentration. When introducing a substitutional Sn impurity, the diffusion barriers increase. Therefore, the substitutional Sn in the diffusion pathway hampers the 3 H diffusion in Zr hydrides.

36 MATERIALS SCIENCE↗

DOE OSTI2025

Fouling behavior of zwitterionic membranes compared to polyamide membranes

Membrane fouling remains a critical bottleneck for reverse osmosis (RO) desalination, driving energy consumption and reducing membrane lifetime. Here, we employ all-atom molecular dynamics simulations to investigate the antifouling behavior of random zwitterionic amphiphilic copolymer (r-ZAC) membranes composed of sulfobetaine methacrylate (SBMA) and allyl methacrylate (AMA), benchmarked against conventional polyamide (PA) RO membranes. Structural and dynamical analyses—including radial distribution functions, coordination numbers, tetrahedral order parameters, vector orientation, and residence-time correlation functions—reveal that r-ZAC surfaces sustain tightly bound, long-lived hydration layers with preserved tetrahedrality and anisotropic water orientation, in sharp contrast to the weak and disordered hydration of PA. Steered molecular dynamics simulations demonstrate that r-ZAC membranes impose substantial free-energy barriers to foulant approach (alginate ≈ 90 kcal/mol, sucrose ≈ 35 kcal/mol, humic acid ≈ 15 kcal/mol), whereas PA membranes exhibit negligible barriers (< 1 kcal/mol) and thermodynamically favorable adsorption. Detailed foulant–surface interaction analyses show that zwitterionic hydration and electrostatic heterogeneity in r-ZAC suppress adhesion, except in the case of amphiphilic humic acid, which exploits multiple binding modes. Together, these results establish molecular-level design principles for antifouling membranes: the combination of zwitterionic hydration, structured interfacial water, and controlled amphiphilic balance in r-ZAC membranes provides superior resistance to organic fouling relative to PA.

Cross-linked polyamide↗

DOE OSTI2021

MuSIC@Indiana: An effective tool for accurate measurement of fusion with low-intensity radioactive beams

The design, construction, and characterization of the Multi-Sampling Ionization Chamber, MuSIC@Indiana, are described. This detector provides efficient and accurate measurement of the fusion cross-section at near-barrier energies. The response of the detector to low-intensity beams of 17,18 O, 19 F, 23 Na, 24,26 Mg, 27 Al, and 28 Si at E lab 50–60MeV was examined. MuSIC@Indiana was commissioned by measuring the 18 O+ 12 C fusion excitation function for 11 < E cm < 20 MeV using CH 4 gas. Here, a simple, effective analysis cleanly distinguishes proton capture and two-body scattering events from fusion on carbon. With MuSIC@Indiana, measurement of 15 points on the excitation function for a single incident beam energy is achieved. The resulting excitation function is shown to be in good agreement with literature data.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2022

DFT Investigation of Ammonia Formation via a Langmuir–Hinshelwood Mechanism on Mo-Terminated δ-MoN(0001)

In this work, we employed density functional theory to elucidate the energetics associated with elementary steps along a Langmuir-Hinshelwood mechanism for the Haber-Bosch synthesis of ammonia from N 2 and H 2 on a hexagonal, Mo-terminated molybdenum nitride surface. Using nudged elastic band calculations, we determined the energy barriers involved in the reaction processes. An active site consisting of four nearest-neighbor Mo atoms, previously identified as an active site on similar surfaces, was chosen to investigate the reaction processes. Using this approach, we calculate a barrier of ~0.5 eV for the dissociation of N 2 . The superior activity of the dissociation of the strong N 2 bonds is rationalized based on the unique geometric and electronic configurations present at these active sites. Despite the favorable energetics for nitrogen dissociation, the energy cost for hydrogenation of NH x (0 ≤ x ≤ 2) species is shown to be energetically limiting for the formation of ammonia through the Langmuir-Hinshelwood mechanism at these sites, with elementary step activation barriers calculated to be as large as ~2 eV. A comparison to Haber-Bosch results derived from a similar γ-Mo 2 N model system suggests the relative independence of surface chemistry and bulk stoichiometry for rhombic Mo 4 active sites present on molybdenum nitrides.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗