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DOE OSTI2024

Photosynthetic and stomatal response, and leaf traits, of two pine species, Talladega National Forest, Alabama, 2023

Photosynthetic response to irradiance (AQ), CO2 (ACi) and stomatal response to irradiance measurements on two pine species common to the southeast United States, long leaf pine, Pinus palustris Mill., and loblolly pine, Pinus taeda L.. Data were collected in June 2023 within the Oakmulgee District of the Talladega National Forest in west-central Alabama at the NEON site (TALL). Measurements were made with four LI-COR LI-6800 and one LI-COR LI-6400XT gas exchange systems. ACi and AQ curves enable the estimation of photosynthetic parameters (e.g., Vcmax, Jmax, Rd, aQY), while stomatal response curves enable the estimation of stomatal slope and intercept parameters. Foliar trait data (needle dimensions, leaf mass per area, leaf nitrogen concentration) is provided for all gas exchange samples. The data package files include multiple raw and processed data files (csv), metadata files (csv), the complete instrument output for all measurements in .zip format, and a pdf describing the experimental protocol.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

A New Decade in Seismoacoustics (2010–2022)

Several sources of interest often generate both low‐frequency acoustic and seismic signals due to energy propagation through the atmosphere and the solid Earth. Seismic and acoustic observations are associated with a wide range of sources, including earthquakes, volcanoes, bolides, chemical and nuclear explosions, ocean noise, and others. The fusion of seismic and acoustic observations contributes to a better understanding of the source, both in terms of constraining source location and physics, as well as the seismic to acoustic coupling of energy. Here in this review, we summarize progress in seismoacoustic data processing, including recent developments in open‐source data availability, low‐cost seismic and acoustic sensors, and large‐scale deployments of collocated sensors from 2010 to 2022. Similarly, we outline the recent advancements in modeling efforts for both source characteristics and propagation dynamics. Finally, we highlight the advantages of fusing multiphenomenological signals, focusing on current and future techniques to improve source detection, localization, and characterization efforts. This review aims to serve as a reference for seismologists, acousticians, and others within the growing field of seismoacoustics and multiphenomenology research.

58 GEOSCIENCES↗

DOE OSTI2024

Addressing the data and real-time challenges in large scale particle physics experiments through AI and in situ computing technologies

Modern high energy physics experiments are faced not only with the challenge of having to deal with extremely high data rates but with the need to process data quickly to meet real time constraints. At Fermilab, we explore the use of novel computing technologies and techniques to address these challenges. I will discuss my R&D efforts in applying such computing solutions to enhance the multi-messenger astronomy capabilities and improve the overall physics performance of large-scale LArTPC based neutrino experiments. These efforts offer excellent opportunities for fruitful collaboration.

43 PARTICLE ACCELERATORS↗

DOE OSTI2021

PNNL Soil Microbiome SFA

PNNL's Soil Microbiome Science Focus Area (SFA) is focused on understanding the basic biology underpinning how interactions among various soil microbial community members, across trophic levels, lead to the emergence of community functions. Moisture, in particular, drives microbial interactions and influences everything from cell function to substrate fate within soils. The group predicts this results in repeatable, predictable phenotypes. The sum of these phenotypes comprises the “soil metaphenome”. Understanding how the soil metaphenome shifts in response to moisture will provide a basis for modeling and predicting these shifts in reaction network responses. PNNL’s Soil Microbiome SFA project repository on DataHub allows for exploring and downloading integrated experimental omics data, experimental metadata, pre- and post-processed data files, and other associated materials directly related to experimental project publication data. Visit the PNNL Soil Microbiome Science Focus Area Program homepage for more information.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2017

A Data Analysis Framework for Earth System Simulation within an In-Situ Infrastructure

This paper presents a generic procedure to implement a scalable and high performance data analysis framework for large-scale scientific simulation within an in-situ infrastructure. It demonstrates a unique capability for global Earth system simulations using advanced computing technologies (i.e ., automated code analysis and instrumentation), in-situ infrastructure (i.e ., ADIOS) and big data analysis engines (i.e ., SciKit-learn). This paper also includes a useful case that analyzes a globe Earth System simulations with the integration of scalable in-situ infrastructure and advanced data processing package. Finally, the in-situ data analysis framework can provides new insights on scientific discoveries in multiscale modeling paradigms.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2018

Memory synchronization filter

Data synchronization between memories of a data processing system is achieved by transferring the data blocks from a first memory to a second memory, forming a hash list from addresses of data blocks that are written to the second memory or modified in the second memory. The hash list may be to identify a set of data blocks that are possibly written to or modified. Data blocks that are possibly modified may be written back from the second memory to the first memory in response to a synchronization event. The hash list may be updated by computing, in hardware or software, hash functions of an address of the transferred or modified data block to determine bit positions to be set. The hash list may be queried by computing hash functions of an address to determine bit positions, and checking bits in the hash list at those bit positions.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

Imaging systems and related methods including radar imaging with moving arrays or moving targets

Imaging systems, including radio frequency, microwave and millimeter-wave arrangements, and related methods are described. According to one aspect, an imaging system includes an antenna array, a position capture system configured to generate position information indicative of locations of one of the antenna array and the target at the first and second moments in time, and wherein the one of the antenna array and the target move between the first and second moments in time, a transceiver configured to control the antenna array to emit electromagnetic energy towards the target and to generate an output that is indicative of the received electromagnetic energy, a data acquisition system configured to generate radar data, processing circuitry configured to process the position information and the radar data to generate image data regarding the target, and an interface configured to use the image data to generate visual images regarding the target.

Sheen, David M.↗

DOE OSTI2024

Imaging systems and related methods including radar imaging with moving arrays or moving targets

Sheen, David M.↗

DOE OSTI2026

Demonstration and performance of an online data selection algorithm for liquid argon time projection chambers using MicroBooNE

The MicroBooNE detector is a liquid argon time projection chamber (LArTPC) that produces three-dimensional images of particle interactions using ionization charge collected by anode wire plane arrays and scintillation light collected by a light detection system. In addition to testing long-standing experimental neutrino anomalies and performing measurements of neutrino interactions with argon nuclei using the Fermilab Booster Neutrino Beam, MicroBooNE aims to develop methodologies for rare beyond the Standard Model and off-beam physics searches. Looking ahead to the upcoming Deep Underground Neutrino Experiment (DUNE), with MicroBooNE serving as a valuable testbed, achieving high sensitivity and livetime for off-beam physics while satisfying data processing and storage constraints will require data-driven, intelligent, and online or real-time data selection techniques. These techniques are essential for reducing data rates and preserving rare signals with high accuracy. In this paper, we describe a fast data selection algorithm suitable for online execution to identify electrons from stopping cosmic ray muons in the MicroBooNE detector utilizing ionization charge information, and present its performance. This represents the first demonstration of online data selection in a LArTPC using real data and charge information exclusively and provides an important proof-of-principle for applying such techniques to other LArTPC experiments such as the Short-Baseline Near Detector and DUNE.

Abratenko, P. [Tufts U. (main)]↗

DOE OSTI2022

Development of process model of CESAR1 solvent system and validation with large pilot data

Presented at the 16th International Conference on Greenhouse Gas Control Technologie in Lyons, France.

Morgan, Joshua↗

DOE OSTI2015

Radiation Tolerant Electronics and Digital Processing for the Phase-1 Read-out Upgrade of the ATLAS Liquid Argon Calorimeters

The ATLAS Liquid Argon calorimeters are designed and built to study proton-proton collisions produced at the LHC at centre-of-mass energies up to 14 TeV. Liquid argon (LAr) sampling calorimeters are employed for all electromagnetic calorimetry in the pseudorapidity region |η|<3.2, and for hadronic calorimetry in the region from |η|=1.5 to |η|=4.9. Although the nominal LHC experimental programme is still in progress, an upgrade of the read-out electronics is being launched to cope with luminosities of up to 3x10{sup 34} cm{sup -2}s{sup -1}, which are beyond the original design by a factor of 3. An improved spatial granularity of the trigger primitives is therefore proposed in order to improve the identification performance for trigger signatures, like electrons, photons, tau leptons, jets, total and missing energy, at high background rejection rates. For the upgrade Phase-1 in 2018, new LAr Trigger Digitizer Boards (LTDB) are being designed to receive higher granularity signals, digitize them on detector and send them via fast optical links to a new LAr digital processing system (LDPS). The LDPS applies a digital filtering and identifies significant energy depositions in each trigger channel. The refined trigger primitives are then transmitted to the first level trigger system to extract improved trigger signatures. The read-out of the trigger signals will process 34000 so-called Super Cells at every LHC bunch-crossing at a frequency of 40 MHz. The new LTDB on-detector electronics is designed to be radiation tolerant in order to be operated for the remaining live-time of the ATLAS detector up to a total luminosity of 3000 fb{sup -1}. For the analog-to-digital conversion (12-bit ADC at 40 MSPS), the data serialization and the fast optical link (5.44 Gb/s) custom components have been developed. They have been qualified for the expected radiation environment of a total ionization dose of 1.3 kGy and a hadron fluence of 6 x 10{sup 13} h/cm{sup 2} with energies above 20 MeV. For the digital components like the ADC, cross-sections for single event effects have been determined. This talk will present R and D results from tests of the radiation tolerant components, the fast data processing electronics and prototypes of the LTDB and LDPS boards. First experience from a Demonstrator setup will be reported, in which about 1/10 of the full Super Cell readout will be equipped with prototype versions of the LTDB and LDPS boards. The Demonstrator will be operated in parallel to the regular ATLAS trigger read-out during the upcoming LHC run. (authors)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2018

Photoluminescence Spectra in Polycrystals of Chirally Pure and Racemic Phases of Tryptophan

The photoluminescence spectra of three crystalline phase modifications of aromatic amino acid tryptophan are compared: the left phase of L-tryptophan, the right phase of D-tryptophan, and the racemic phase of DL-tryptophan. The photoluminescence spectra were recorded using a fiber-optic procedure, a small-size FSD-8 spectrometer, and a data processing system that enables comparison of the analyzed spectrum with the spectrum of a reference substance. Photoluminescence was excited by a pulsed-periodic ultraviolet laser at a wavelength of 266 nm.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2026

Raw soil carbon dioxide, moisture, temperature and micrometeorological data in the East River Watershed, Colorado June 2021-June 2024. (DE-SC0021139)

This dataset contains raw data from four tripod stations along an elevation gradient on Snodgrass Mountain in the East River Watershed, CO, USA. Each station contains a datalogger connected to 3 soil Carbon Dioxide CO2 gas probes, 3 soil temperature/moisture sensors and a micrometeorological station. Sensors are scanned every minute, and the 30 minute average is reported. The file snodgrass_soil_ESS.csv contains raw data, a row of column descriptors, and units of measurements. some data processing and QA/QC was done to filter out data from sensors that went bad and extreme outliers. CO2 sensors that went bad were replaced with new sensors as soon as possible. This research was performed to investigate the ecohydrological linkages of belowground carbon processes in the East River watershed forested communities to better understand how these ecosystems will respond to a changing cold-season moisture input. This is the second version of this data set and was modified on 10/01/2024. The primary change in the data was the addition of data from the fall of 2022 to June of 2024. In addition, minor QA/QC was done to filter out data from sensors that went bad and extreme outliers. THe filtered data are now NA's in this data frame and primarily the CO2 sensors. Limited to no QA/QC has been done on the other environmental data. This is now the third version of the data set, and was modified 03/25/2026. The primary change in the data was the addition of data from the June of 2024 to December 2025. Further r QA/QC was done with the new data to filter out bad data from faulty sensors and extreme outliers. The filtered data are now NA's in this data frame and primarily the CO2 sensors. Limited to no QA/QC has been done on the other environmental data. ##This additional data was funded under DE-SC0024218( Responses of Plant and Microbial Respiration Sources to Changing Cold Season Climate Drivers in the East River Watershed)

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Optimizing the sensitivity of high repetition rate broadband transient optical spectroscopy with modified shot-to-shot detection

A major limitation of transient optical spectroscopy is that relatively high laser fluences are required to enable broadband, multichannel detection with acceptable signal-to-noise levels. Under typical experimental conditions, many condensed phase and nanoscale materials exhibit fluence-dependent dynamics, including higher order effects such as carrier–carrier annihilation. With the proliferation of commercial laser systems, offering both high repetition rates and high pulse energies, have come new opportunities for high sensitivity pump-probe measurements at low pump fluences. However, experimental considerations needed to fully leverage the statistical advantage of these laser systems have not been fully described. Here, we demonstrate a high repetition rate, broadband transient spectrometer capable of multichannel shot-to-shot detection at 90 kHz. Importantly, we find that several high-speed cameras exhibit a time-domain fixed pattern noise resulting from interleaved analog-to-digital converters, which is particularly detrimental to the conventional “ON/OFF” modulation scheme used in pump-probe spectroscopy. Using a modified modulation and data processing scheme, we achieve a noise level of 10−5 in 4 s for differential transmission, an order of magnitude lower than for commercial 1 kHz transient spectrometers for the same acquisition time. We leverage the high sensitivity of this system to measure the differential transmission of monolayer graphene at low pump fluence. We show that signals on the order of 10−6 OD can be measured, enabling a new data acquisition regime for low-dimensional materials.

47 OTHER INSTRUMENTATION↗

DOE OSTI2023

DEEPEN Leapfrog Geodata Model Cleaned and Reformatted Exploration Datasets from Newberry Volcano

DEEPEN stands for DE-risking Exploration of geothermal Plays in magmatic ENvironments. As part of the DEEPEN 3D play fairway analysis (PFA) conducted at Newberry Volcano for multiple play types (conventional hydrothermal, superhot EGS, and supercritical), existing geoscientific exploration datasets needed to be acquired, cleaned, reformatted, and assembled in Leapfrog Geothermal. This GDR submission includes all of the cleaned and reformatted (X (m), Y (m), elevation (m), processed data values) datasets used to build the Leapfrog Geodata model. Existing datasets were acquired from the GDR, from AltaRock, and from other sources. This yielded the following datasets: - Digital elevation model produced from LiDAR data by Ramsey and Bard, 2016 - MT surveys from 2006, 2011, 2014, and 2017 (including single inversions) - Gravity surveys from 2006, 2007, and 2011 (including single) - Earthquake catalogs from PNSN, LLNL, and the Newberry EGS Demonstration project - Seismic velocity model from Templeton et al., 2014 - The Frone, 2015 temperature model and a new one produced through extrapolating downhole temperature measurements and the SMU temperature at depth maps. Two versions of the new model are provided: 250 m spacing and 500 m spacing - EarthVision geologic model with alteration from Moser et al., 2016 - Well data from EGS well 55-29, deep geothermal wells, coreholes (GEO N-2 through 5) and several thermal gradient holes - "Newberry Well Data:" Location, simple lithology, directional survey data, and temperature data for the 34 wells and coreholes used in the Newberry PFA Although there are additional 2D datasets available in the area, such as aeromagnetic surveys, these were not included in the analysis. While it may be possible to project these datasets into three dimensions by assuming the surface measurements do not vary with depth, this method is associated with high uncertainty. Preexisting inversions of these data were unavailable, and inverting additional geophysical datasets is outside the scope of this project.

15 GEOTHERMAL ENERGY↗

DOE OSTI2015

SU-E-T-272: Direct Verification of a Treatment Planning System Megavoltage Linac Beam Photon Spectra Models, and Analysis of the Effects On Patient Plans

Purpose: For the photon dose calculation Philips Pinnacle Treatment Planning System (TPS) uses collapsed cone convolution algorithm, which relies on energy spectrum of the beam in computing the scatter component. The spectrum is modeled based on Linac’s standard commissioning data and typically is not independently verified. We explored a methodology of using transmission measurements in combination with regularization data processing to unfold Linac spectra. The measured spectra were compared to those modeled by the TPS, and the effect on patient plans was evaluated. Methods: Transmission measurements were conducted in narrow-beam geometry using a standard Farmer ionization chamber. Two attenuating materials and two build -up caps, having different atomic numbers, served to enhance discrimination between absorption of low and high-energy portions of the spectra, thus improving the accuracy of the results. The data was analyzed using a regularization technique implemented through spreadsheet-based calculations. Results: The unfolded spectra were found to deviate from the TPS beam models. The effect of such deviations on treatment planning was evaluated for patient plans through dose distribution calculations with either TPS modeled or measured energy spectra. The differences were reviewed through comparison of isodose distributions, and quantified based on maximum dose values for critical structures. While in most cases no drastic differences in the calculated doses were observed, plans with deviations of 4 to 8% in the maximum dose values for critical structures were discovered. The anatomical sites with large scatter contributions are the most vulnerable to inaccuracies in the modeled spectrum. Conclusion: An independent check of the TPS model spectrum is highly desirable and should be included as part of commissioning of a new Linac. The effect is particularly important for dose calculations in high heterogeneity regions. The developed approach makes acquisition of megavoltage Linac beam spectra achievable in a typical radiation oncology clinic.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2022

Approximate recoverability and relative entropy II: 2-positive channels of general von Neumann algebras

Abstract We generalize our results in paper I in this series to quantum channels between general von Neumann algebras, proving the approximate recoverability of states which undergo a small change in relative entropy through the channel. To this end, we derive a strengthened form of the quantum data processing inequality for the change in relative entropy of two states under a channel between two von Neumann algebras. Compared to the usual inequality, there is an explicit lower bound involving the fidelity between the original state and a recovery channel.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Beyond integration: modeling every pixel to obtain better structure factors from stills

Most crystallographic data processing methods use pixel integration. In serial femtosecond crystallography (SFX), the intricate interaction between the reciprocal lattice point and the Ewald sphere is integrated out by averaging symmetrically equivalent observations recorded across a large number (10 4 -10 6 ) of exposures. Although sufficient for generating biological insights, this approach converges slowly, and using it to accurately measure anomalous differences has proved difficult. This report presents a novel approach for increasing the accuracy of structure factors obtained from SFX data. A physical model describing all observed pixels is defined to a degree of complexity such that it can decouple the various contributions to the pixel intensities. Model dependencies include lattice orientation, unit-cell dimensions, mosaic structure, incident photon spectra and structure factor amplitudes. Maximum likelihood estimation is used to optimize all model parameters. The application of prior knowledge that structure factor amplitudes are positive quantities is included in the form of a reparameterization. The method is tested using a synthesized SFX dataset of ytterbium(III) lysozyme, where each X-ray laser pulse energy is centered at 9034 eV. This energy is 100 eV above the Yb 3+ L -III absorption edge, so the anomalous difference signal is stable at 10 electrons despite the inherent energy jitter of each femtosecond X-ray laser pulse. This work demonstrates that this approach allows the determination of anomalous structure factors with very high accuracy while requiring an order-of-magnitude fewer shots than conventional integration-based methods would require to achieve similar results.

59 BASIC BIOLOGICAL SCIENCES↗