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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 847 records · Page 47

Cric searchable image database as a public platform for conventional pap smear cytology data

Amidst the current health crisis and social distancing, telemedicine has become an important part of mainstream of healthcare, and building and deploying computational tools to support screening more efficiently is an increasing medical priority. The early identification of cervical cancer precursor lesions by Pap smear test can identify candidates for subsequent treatment. However, one of the main challenges is the accuracy of the conventional method, often subject to high rates of false negative. While machine learning has been highlighted to reduce the limitations of the test, the absence of high-quality curated datasets has prevented strategies development to improve cervical cancer screening. The Center for Recognition and Inspection of Cells (CRIC) platform enables the creation of CRIC Cervix collection, currently with 400 images (1,376 × 1,020 pixels) curated from conventional Pap smears, with manual classification of 11,534 cells. This collection has the potential to advance current efforts in training and testing machine learning algorithms for the automation of tasks as part of the cytopathological analysis in the routine work of laboratories.

59 BASIC BIOLOGICAL SCIENCES↗

Landscape analysis of environmental data sources for linkage with SEER cancer patients database

Abstract One of the challenges associated with understanding environmental impacts on cancer risk and outcomes is estimating potential exposures of individuals diagnosed with cancer to adverse environmental conditions over the life course. Historically, this has been partly due to the lack of reliable measures of cancer patients’ potential environmental exposures before a cancer diagnosis. The emerging sources of cancer-related spatiotemporal environmental data and residential history information, coupled with novel technologies for data extraction and linkage, present an opportunity to integrate these data into the existing cancer surveillance data infrastructure, thereby facilitating more comprehensive assessment of cancer risk and outcomes. In this paper, we performed a landscape analysis of the available environmental data sources that could be linked to historical residential address information of cancer patients’ records collected by the National Cancer Institute’s Surveillance, Epidemiology, and End Results Program. The objective is to enable researchers to use these data to assess potential exposures at the time of cancer initiation through the time of diagnosis and even after diagnosis. The paper addresses the challenges associated with data collection and completeness at various spatial and temporal scales, as well as opportunities and directions for future research.

60 APPLIED LIFE SCIENCES↗

In Situ Visualization and Production of Extract Databases

Simulations running at high concurrency on HPC systems generate large volumes of data that are impractical to write to disk due to time and storage constraints. Applications often adapt by saving data infrequently, resulting in datasets with poor temporal resolution. This can make datasets difficult to interpret during post hoc visualization and analysis, or worse, it can lead to lost science. In Situ visualization and analysis can enable efficient production of small data products such as rendered images or surface extracts that consist of polygonal geometry plus fields. These data products are far smaller than their source data and can be processed much more economically in a traditional post hoc workflow using far fewer computational resources. We used the SENSEI and Libsim in situ infrastructures to implement rendering workflow and surface data extraction workflows in the AVF-LESLIE combustion code. Finally, these workflows were then demonstrated at high levels of concurrency and showed significant data reductions and limited impact on the simulation runtime.

97 MATHEMATICS AND COMPUTING↗

Southeast Regional CO 2 Utilization and Storage Acceleration Partnership (SECARB-USA): Results of Existing CO 2 Source and Sink Databases Analysis

The “Southeast Regional CO 2 Utilization and Storage Acceleration Partnership” (SECARB-USA) project supported the U.S. Department of Energy (DOE) Office of Fossil Energy's (FE) mission to help the United States meet its need for secure, affordable, and environmentally sound fossil energy supplies by utilizing the advancements made since 2003 by the Regional Carbon Sequestration Partnership (RCSP) Initiative to continue to identify and address knowledge gaps.

42 ENGINEERING↗

Validation of the National Solar Radiation Database (NSRDB) (2005-2012): Preprint

Publicly accessible, high-quality, long-term, satellite-based solar resource data is foundational and critical to solar technologies to quantify system output predictions and deploy solar energy technologies in grid-tied systems. Solar radiation models have been in development for more than three decades. For many years, the National Renewable Energy Laboratory (NREL) developed and/or updated such models through the National Solar Radiation Data Base (NSRDB). There are two widely used approaches to derive solar resource data from models: (a) an empirical approach that relates ground-based observations to satellite measurements and (b) a physics-based approach that considers the radiation received at the satellite and creates retrievals to estimate clouds and surface radiation. Although empirical methods have been traditionally used for computing surface radiation, the advent of faster computing has made operational physical models viable. The Global Solar Insolation Project (GSIP) is an operational physical model from the National Oceanic and Atmospheric Administration (NOAA) that computes global horizontal irradiance (GHI) using the visible and infrared channel measurements from the Geostationary Operational Environmental Satellites (GOES) system. GSIP uses a two-stage scheme that first retrieves cloud properties and then uses those properties in the Satellite Algorithm for Surface Radiation Budget (SASRAB) model to calculate surface radiation. NREL, the University of Wisconsin, and NOAA have recently collaborated to adapt GSIP to create a high temporal and spatial resolution data set. The product initially generates the cloud properties using the AVHRR Pathfinder Atmospheres-Extended (PATMOS-x) algorithms [3], whereas the GHI is calculated using SASRAB. Then NREL implements accurate and high-resolution input parameters such as aerosol optical depth (AOD) and precipitable water vapor (PWV) to compute direct normal irradiance (DNI) using the DISC model. The AOD and PWV, temperature, and pressure data are also combined with the MMAC model to simulate solar radiation under clear-sky conditions. The current NSRDB update is based on a 4-km x 4-km resolution at a 30-minute time interval, which has a higher temporal and spatial resolution. This paper demonstrates the evaluation of the data set using ground-measured data and detailed evaluation statistics. The result of the comparison shows a good correlation to the NSRDB data set. Further, an outline of the new version of the NSRDB and future plans for enhancement and improvement are provided.

14 SOLAR ENERGY↗

A global database of nitrogen and phosphorus excretion rates of aquatic animals

Though their importance varies greatly among species and ecosystems, animals can be important in modulating ecosystem-level nutrient cycling. Nutrient cycling rates of individual animals represent valuable data for testing the predictions of important frameworks such as the Metabolic Theory of Ecology (MTE) and ecological stoichiometry (ES). They also represent an important set of functional traits that may reflect both environmental and phylogenetic influences. Over the past two decades, studies of animal-mediated nutrient cycling have increased dramatically, especially in aquatic ecosystems. Here we present a global compilation of aquatic animal nutrient excretion rates. The dataset includes 10,534 observations from freshwater and marine animals of N and/or P excretion rates. Furthermore, these observations represent 491 species, including most aquatic phyla. Coverage varies greatly among phyla and other taxonomic levels. The dataset includes information on animal body size, ambient temperature, taxonomic affiliations, and animal body N:P. We used this data set to test predictions of MTE and ES, as described in Vanni and McIntyre (2016; Ecology DOI: 10.1002/ecy.1582).

54 ENVIRONMENTAL SCIENCES↗

pyEGAF: Modernization of the EGAF database

One of the most comprehensive resources for thermal neutron-capture data is the Evaluated Gamma-ray Activation File (EGAF), containing data from prompt gamma activation analysis measurements carried out at the Budapest Research Reactor for 245 isotopes. Although these valuable datasets have been freely available for many years, the outdated and cryptic adopted format makes it difficult to utilize the data and it is not generally suitable for modern computational technologies. Furthermore, to help overcome these challenges, we have converted the datasets into an open standard JSON format. Additionally, we have developed a Python implementation of an open-source software package, pyEGAF, designed to interact with the JSON data structures for general purpose access, manipulation, and rapid assessment of the capture-gamma data in EGAF.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗