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Atmospheric Radiation Measurement (ARM) airborne field campaign data products between 2013 and 2018

Airborne measurements are pivotal for providing detailed, spatiotemporally resolved information about atmospheric parameters and aerosol and cloud properties, thereby enhancing our understanding of dynamic atmospheric processes. For 30 years, the US Department of Energy (DOE) Office of Science supported an instrumented Gulfstream 1 (G-1) aircraft for atmospheric field campaigns. Data from the final decade of G-1 operations were archived by the Atmospheric Radiation Measurement (ARM) Data Center and made publicly available at no cost to all registered users. To ensure a consistent data format and to improve the accessibility of the ARM airborne data, an integrated dataset was recently developed covering the final 6 years of G-1 operations (2013 to 2018, https://doi.org/10.5439/1999133; Mei and Gaustad, 2024). The integrated dataset includes data collected from 236 flights (766.4 h), which covered the Arctic, the US Southern Great Plains (SGP), the US West Coast, the eastern North Atlantic (ENA), the Amazon Basin in Brazil, and the Sierras de Córdoba range in Argentina. These comprehensive data streams provide much-needed insight into spatiotemporal variability in the thermodynamic quantities and aerosol and cloud properties for addressing essential science questions in Earth system process studies. This paper describes the DOE ARM merged G-1 datasets, including information on the acquisition, data collection challenges and future potentials, and quality control processes. It further illustrates the usage of this merged dataset to evaluate the Energy Exascale Earth System Model (E3SM) with the Earth System Model Aerosol–Cloud Diagnostics (ESMAC Diags) package.

54 ENVIRONMENTAL SCIENCES↗

Satellite Sounder Products in NASA GES DISC & Services Supporting Their Applications

The NASA Goddard Earth Sciences Data and Information Services Center (GES DISC), in collaboration with NASA Sounder Team at the Jet Propulsion Laboratory (JPL), provides processing, archiving, and distribution services for remotely-sensed data acquired by satellite sounders. Supported data sets begin chronologically with the legacy TIROS Operational Vertical Sounder (TOVS) Pathfinder, continue to the Atmospheric Infrared Sounder (AIRS), a modern hyperspectral sounder onboard the Aqua satellite, and are followed by data from the subsequent Suomi-National Polar-orbiting Partnership Cross-track Infrared Sounder (CrIS) mission and the Joint Polar Satellite System (JPSS) series CrIS missions. These satellite sounders provide long-term global observations of the atmospheric state, including temperature and humidity profiles, outgoing longwave radiation, cloud properties, and trace gases. Applications of sounder data products cover a broad range of fields, including meteorology climatology, hydrology, and air quality. The GES DISC has developed many services to assist users, including simplified and efficient methods for searching, accessing, downloading, and analytically exploring these satellite sounder data products. We have also developed the Giovanni system, a broadly used Web-based application, which provides a simple and intuitive way to visualize, analyze, and access Earth science remote sensing data. In this presentation, we will introduce the standard and near-real time sounder data products, and demonstrate our services through some use cases. Highlights of our service capabilities include data subset, vertical profile plot, inter-comparison, multi-year monthly/seasonal mean, interannual monthly/seasonal time series, and anomaly analysis.

Ding, Feng↗

Visualizing Geospatial Data through ESRI Story Maps for Earth Science Education: Lessons Learned from My NASA Data

For 20 years My NASA Data (MND) has curated NASA Earth science data and provided the data to educators in engaging learner-centered resources. MND has recently featured story maps as an innovative way to engage students in NASA Earth data. A story map is a cloud-based lesson that engages the learner in interactive geospatial maps using NASA data, and other multimedia content, text, and tasks that can be seamlessly incorporated in classroom instruction. This immersive technology eliminates the need for the user to move among tricky interfaces to access and visualize Earth science data, and no special software is required to be downloaded. Each story map integrates data from different NASA satellite missions, retrieved from Distributed Active Archive Centers (DAACs). Story maps also employ data analysis tools, such as time series options and swipe tools that allow learners to view and analyze relationships between scientific variables. MND has produced 25 story map lesson plans on the topics of air quality, the urban heat island effect, Earth’s energy budget, phytoplankton distribution, hurricane formation, solar eclipses, ocean circulation patterns, sea ice extent, and volcanic eruptions. Nine of them are extended story maps and written in the 5E format, which is internationally recognized as best practice based on how children learn science. Each story map resource is developed by the MND team featuring a GIS programming specialist, a lead scientist, and educational specialist/s to ensure the context, content, and methods are scientifically and educationally sound. The MND story maps are written for middle and high school science teachers and students as they connect with the Earth Systems Science phenomena featured in the Next Generation Science Standards. Each story map includes supporting resources for smooth integration in the classroom. During Fiscal Year 2023, The My NASA Data website received over 100,000 story map engagements during. These metrics highlight the interest in story maps as an Earth Science educational resource.

Desiray Wilson↗

Surface Biology & Geology Pathfinder Data Analysis Pipeline

NASA's future global orbital mission, currently in development as the Surface Biology and Geology (SBG) Designated Observable study, will acquire relatively high resolution solar-reflected spectroscopy and thermal infrared observations. Innovative processes must be utilized for handling the high volume of data anticipated to be collected, which is anticipated to exceed 100 terabytes/day, greater than NASA's total extant airborne hyperspectral data collection. Collecting, processing/re-processing, disseminating, and exploiting this volume of data presents new challenges. To begin addressing them, NASA is drawing upon the expertise developed from its astrophysics programs to address Earth science and applications. Specifically, NASA is adapting the science processing operations technology developed for the Kepler and TESS planet-hunting missions for imaging spectroscopy data processing. This technology development has been the foundation for the remarkable scientific successes of Kepler and TESS. The Kepler/TESS data processing technology provides a scalable architecture for robust, repeatable, and replicable science and application products while enabling the Earth science community to develop, test, and implement new algorithms. Our effort to leverage this existing capability has begun by ingesting data and applying workflows from the EO-1/Hyperion 17-year mission archive that provides globally sampled visible through shortwave infrared spectra that are representative of SBG data types and volumes. This pathfinding data processing system will help define the solutions to processing SBG data volumes and will enable the scientific community to interact with the data and processing pipeline to create new science products.

Jenkins, Jon↗

The ICESat-2 Mission: Land, Ocean, and Inland Water Data Products for Middle and Low Latitude Science and Applications

NASA’s Ice, Cloud, and Land Elevation Satellite (ICESat-2) is a polar orbiting mission, launched on September 15, 2018, with over two years of nearly continuous observations. The sole instrument onboard is the Advanced Topographic Laser Altimeter System (ATLAS), a micropulse, high repetition rate, six-beam, 532 nm Lidar with photon-counting technology. Although designed primarily for detecting height changes in ice caps and sea ice in the high latitudes, it continuously observes all terrain in its track including middle and low latitude regions as well, during approximately 15 orbits per day. The official ICESat-2 products include not only cryosphere data but also global high resolution parameters associated with tree canopies, land surface, oceans, and over 1.5 million inland water bodies consisting of lakes, rivers and coastal waters. This presentation provides an overview and the status of the ICESat-2 mission including: i) a summary of the salient technological features and orbit design, ii) the official ICESat-2 science data products for ice, vegetation canopy, ocean sea level, and inland water including several examples in the middle and low latitudes, iii) a list of NASA sponsored software tools for globally browsing the two year archive and for processing both the raw data and the official ICESat-2 geophysical data products, and iv) avenues for interested users to connect with the ICESat-2 Applications Program for answering questions and assistance in possibly using ICESat-2 data in your particular science or application. The overall goal is to facilitate the use of ICESat-2 data not only for science investigations but also for improved decision support applications with societal benefit. Additional ICESat-2 information, documentation and data products are publicly available at https://nsidc.org/data/icesat-2

ICESat-2↗

NSSDC: Preserving time with technological advances

The National Space Science Data Center (NSSDC) has always striven to use the best methods and media currently available from data accessibility and archive management. The various advantages and disadvantages of four different media forms that have been used by NSSDC over 12 years of archiving and distributing of International Ultraviolet Explorer (IUE) data are discussed. The four media are nine track magnetic tape, IBM 3850 mass storage, Memorex 3480 18 track tape catridge, and the Sony 6.5 Gbyte Century optical disk. The CD-ROM medium is also discussed.

Perry, Charleen↗

The function of the earth observing system - Data information system Distributed Active Archive Centers

The functionality of the Distributed Active Archive Centers (DAACs) which are significant elements of the Earth Observing System Data and Information System (EOSDIS) is discussed. Each DAAC encompasses the information management system, the data archival and distribution system, and the product generation system. The EOSDIS DAACs are expected to improve the access to earth science data set needed for global change research.

Lapenta, C. C.↗

The EOSDIS Version 0 Distributed Active Archive Center for physical oceanography and air-sea interaction

The Distributed Active Archive Center (DAAC) at the Jet Propulsion Laboratory will support scientists specializing in physical oceanography and air-sea interaction. As part of the NASA Earth Observing System Data and Information System Version 0 the DAAC will build on existing capabilities to provide services for data product generation, archiving, distribution and management of information about data. To meet scientist's immediate needs for data, existing data sets from missions such as Seasat, Geosat, the NOAA series of satellites and the Global Positioning Satellite system will be distributed to investigators upon request. In 1992, ocean topography, wave and surface roughness data from the Topex/Poseidon radar altimeter mission will be archived and distributed. New data products will be derived from Topex/Poseidon and other sensor systems based on recommendations of the science community. In 1995, ocean wind field measurements from the NASA Scatterometer will be supported by the DAAC.

Hilland, Jeffrey E.↗

CERES and the S'COOL Project

The first Clouds and the Earth's Radiant Energy System (CERES) instrument will be launched on the Tropical Rainfall Measuring Mission (TRMM) spacecraft from a Japanese launch site in November 1997. This instrument is a follow-on to the Earth Radiation Budget Experiment (ERBE) begun in the 1980's. The instrument will measure the radiation budget - incoming and outgoing radiant energy - of the Earth. It will establish a baseline and look for climatic trends. The major feature of interest is clouds, which play a very strong role in regulating our climate. CERES will identify clear and cloudy regions and determine cloud physical and microphysical properties using imager data from a companion instrument. Validation efforts for the remote sensing algorithms will be intensive. As one component of the validation, the S'COOL (Students' Cloud Observations On-Line) project will involve school children from around the globe in making ground truth measurements at the time of a CERES overpass. Their observations will be collected at the NASA Langley Distributed Active Archive Center (DAAC) and made available over the Internet for educational purposes as well as for use by the CERES Science Team in validation efforts. Pilot testing of the S'COOL project began in January 1997 with two local schools in Southeastern Virginia and one remote site in Montana. This experience is helping guide the development of the S'COOL project. National testing is planned for April 1997, international testing for July 1997, and global testing for October 1997. In 1998, when the CERES instrument is operational, a global observer network should be in place providing useful information to the scientists and learning opportunities to the students.

Chambers, Lin H.↗

The CERES S'COOL Project: Development and Operational Phases

As part of NASA's Mission to Planet Earth, the first Clouds and the Earth's Radiant Energy System (CERES) instrument will be launched on the Tropical Rainfall Measuring Mission (TRMM) spacecraft from the Tanegashima launch site in Japan in November 1997. The instrument will measure the radiation budget incoming and outgoing radiant energy - of the Earth. The major feature of interest is clouds, which play a very strong role in regulating our climate. CERES will identify clear and cloudy regions and determine cloud physical and microphysical properties using imager data from a companion instrument. Validation efforts for the remote sensing algorithms will be intensive. As one component of the validation, the S'COOL (Students' Cloud Observations On-Line) project will involve school children around the globe in making ground truth measurements at the time of a CERES overpass. They will report cloud type, height, fraction, and opacity, as well as the local surface conditions. Their observations will be collected at the NASA Langley Distributed Active Archive Center (DAAC) and made available over the Internet for educational purposes as well as for use by the CERES Science Team in validation efforts. Pilot testing of the S'COOL project began in January 1997 with two local schools in Southeastern Virginia and one remote site in Montana. National testing in April 1997 involved 8 schools (grades 3 to high school) across the United States. Global testing will be carried out in October 1997. Details of the S'COOL project, which is mainly Internet-based, are being developed in each of these phases according to feedback received from participants. In 1998, when the CERES instrument is operational, a global observer network should be in place providing useful information to the scientists and learning opportunities to the students. Broad participation in the S'COOL project is planned, both to obtain data from a wide range of geographic areas, and to involve as many students as possible in learning about clouds and atmospheric science. This paper reports on the development phase of the S'COOL project, including the reaction of the teachers and students who have been involved. It describes the operational state of the S'COOL network, and identifies opportunities for additional participants.

Chambers, Lin H.↗

NASA Goddard Giovanni Support for YOTC

The fundamental challenges to overcoming our shortcomings in understanding and modeling/predicting tropical convection have been twofold: I) the need to represent the broad range of scales applicable to the tropical organization problem (i.e. cumulus to planetary), and II) the lack of observations that adequately and simultaneously characterize this broad range of scales and that also provide three-dimensional information on thermodynamic, radiative and dynamical interactions, including cloud microphysical processes. In regards to the second challenge, it should be stressed that this problem will not be solved through the production and examination of one or a few high quality long-term records of fundamental quantities (e.g., SST, water vapor, cloud fraction). Rather, an alternative and more comprehensive paradigm is needed, one that integrates the multitude of applicable resources and measures of tropical convection in a manner that that can be better utilized by the diagnostic, modeling and forecasting communities to more completely and coherently focus on the problem.Because the goal of YOTC involves examining a scientifically complex, multi-scale process , rather than documenting the characteristics of a single parameter (e.g., SST, cloud cover), YOTC has an IOP perspective that targets a period, May 2008 April 2010, long enough to encompass many cases of tropical convection activity in many of its most challenging yet influential forms. This includes mesoscale and synoptic variability, easterly waves and hurricanes, convectively coupled waves, the MJO and the culmination of these in terms of the monsoon, their interactions with the extra-tropics, and mean characteristics such as tropical-to-subtropical transitions. The YOTC time period and length are driven in part by the following: 1) keeping the multi-sensor/multi-platform and model-analyses data sets and associated infrastructure manageable, 2) facilitating a focused effort by the research and operational communities on a specific scientific problem, and 3) capitalizing on the recent key additions to the armada of satellites (e.g., CloudSat and CALIPSO). The proposed dissemination framework for the YOTC satellite data archive is based on the Giovanni system. Giovanni is a web-based application developed by the NASA Goddard Earth Science (GES) Data and Information Service Center (DISC) that provides a simple and intuitive way to visualize, analyze, and access/download vast amounts of Earth science remote sensing data. A prototype YOTC Giovanni System (hereafter YOTC-GS) is in the process of being developed. YOTC-GS will provide access to level 2 (i.e. swath level data) and/or level 3 (i.e. gridded/mapped data) forms of satellite data, the choice or both depending on what is appropriate and relevant. The former is needed and better suited for detailed process examination, exploiting the highest temporal-spatial resolutions available and comparison to regional cloud-system resolving model / cloud resolving model (CSRM/CRM) model output. The latter is needed and more well suited for examination of phenomena, conditions and processes on large to global scales, and for comparisons to global model analyses, prediction and simulation output.

Ostrenga, Dana↗

ldentifying Episodes of Earth Science Phenomena Using a Big-Data Technology

A significant portion of Earth Science investigations is phenomenon- (or event-) based, such as the studies of Rossby waves, volcano eruptions, tsunamis, mesoscale convective systems, and tropical cyclones. However, except for a few high-impact phenomena, e.g. tropical cyclones, comprehensive records are absent for the occurrences or events of these phenomena. Phenomenon-based studies therefore often focus on a few prominent cases while the lesser ones are overlooked. Without an automated means to gather the events, comprehensive investigation of a phenomenon is at least time-consuming if not impossible. We have constructed a prototype Automated Event Service (AES) system that is used to methodically mine custom-defined events in the reanalysis data sets of atmospheric general circulation models. Our AES will enable researchers to specify their custom, numeric event criteria using a user-friendly web interface to search the reanalysis data sets. Moreover, we have included a social component to enable dynamic formation of collaboration groups for researchers to cooperate on event definitions of common interest and for the analysis of these events. An Earth Science event (ES event) is defined here as an episode of an Earth Science phenomenon (ES phenomenon). A cumulus cloud, a thunderstorm shower, a rogue wave, a tornado, an earthquake, a tsunami, a hurricane, or an El Nino, is each an episode of a named ES phenomenon, and, from the small and insignificant to the large and potent, all are examples of ES events. An ES event has a duration (often finite) and an associated geo-location as a function of time; it's therefore an entity embedded in four-dimensional (4D) spatiotemporal space. Earth Science phenomena with the potential to cause massive economic disruption or loss of life often rivet the attention of researchers. But, broader scientific curiosity also drives the study of phenomena that pose no immediate danger, such as land/sea breezes. Due to Earth System's intricate dynamics, we are continuously discovering novel ES phenomena. We generally gain understanding of a given phenomenon by observing and studying individual events. This process usually begins by identifying the occurrences of these events. Once representative events are identified or found, we must locate associated observed or simulated data prior to commencing analysis and concerted studies of the phenomenon. Knowledge concerning the phenomenon can accumulate only after analysis has started. However, as mentioned previously, comprehensive records only exist for a very limited set of high-impact phenomena; aside from these, finding events and locating associated data currently may take a prohibitive amount of time and effort on the part of an individual investigator. The reason for the lack of comprehensive records for most of the ES phenomena is mainly due to the perception that they do not pose immediate and/or severe threat to life and property. Thus they are not consistently tracked, monitored, and catalogued. Many phenomena even lack precise and/or commonly accepted criteria for definitions. Moreover, various Earth Science observations and data have accumulated to a previously unfathomable volume; NASA Earth Observing System Data Information System (EOSDIS) alone archives several petabytes (PB) of satellite remote sensing data, which are steadily increasing. All of these factors contribute to the difficulty of methodically identifying events corresponding to a given phenomenon and significantly impede systematic investigations. We have not only envisioned AES as an environment for identifying customdefined events but also aspired for it to be an interactive environment with quick turnaround time for revisions of query criteria and results, as well as a collaborative environment where geographically distributed experts may work together on the same phenomena. A Big Data technology is thus required for the realization of such a system. In the following, we first introduce the technology selected for AES in the next section. We then demonstrate the utility of AES using a use case, Blizzard, before we conclude.

Kuo, Kwo-Sen↗

The need for reference-able and peer reviewed position papers

Space Physics community members are putting substantial efforts and ideas into position papers, in preparation for the U.S. Heliophysics Decadal Survey process; an analysis of the current state of the field and where future research, mission programs, and funding should focus. Furthermore, Space Physics community members in Europe and the U.S. have recently put substantial efforts and ideas into position papers for Vision 2050 and Heliophysics 2050. There are also other ideas in the community about the needs and focus of future Space Physics research efforts, whether they were submitted to other road mapping activities, or have yet to find the appropriate home. With this in mind, we have created a Frontiers in Astronomy and Space Sciences Research Topic ’The Future of Space Physics 2022’, to provide a format for a reference-able, peer reviewed, archived, accessible collection of these ideas from around the world. We wish to make these ideas available to the national academies decadal survey committees, the broader research community and a wider audience, by developing this collection. The collection will publish high-quality papers on key topics across the field of Space Physics, aiming to highlight recent advances in the field, whilst emphasizing important directions and new possibilities for future inquiries.

Alexa Jean Halford↗

TESS Science Processing Operations Center Pipeline and Data Products

TESS launched 18 April 2018 to conduct a two-year, near all-sky survey for at least 50 small, nearby exoplanets for which masses can be ascertained and whose atmospheres can be characterized by ground- and space-based follow-on observations. TESS just completed its survey of the southern hemisphere, identifying >600 candidate exoplanets and unveiling a plethora of exciting non-exoplanet astrophysics results, such as asteroseismology, asteroids, and supernova. The TESS Science Processing Operations Center (SPOC) processes the data downlinked every two weeks to generate a range of data products hosted at the Mikulski Archive for Space Telescopes (MAST). For each sector (~1 month) of observations, the SPOC calibrates the image data for both 30-min Full Frame Images (FFIs) and up to 20,000 pre-selected 2-min target star postage stamps. Data products for the 2-min targets include simple aperture photometry and systematic error-corrected flux time series. The SPOC also conducts searches for transiting exoplanets in the 2-min data for each sector and generates Data Validation time series and associated reports for each transit-like feature identified in the search. Multi-sector searches for exoplanets are conducted periodically to discover longer period planets, including those in the James Webb Continuous Viewing Zone (CVZ), which are observed for up to one year. Data products also include co-trending basis vectors (CBVs) and calibration files, such as the Pixel Response Functions across the field of view of each of TESS's four cameras. To maximize the usability, the TESS science data products are modeled after those for Kepler, including Target Pixel Files and Light Curve files.In this talk, I describe the SPOC pipeline and the chief differences between the TESS and the Kepler pipelines, and the major updates to the SPOC pipeline (4.0) available now to the community at MAST. I also discuss the documentation available to the community to help them in properly interpreting and analyzing the TESS data products.The TESS Mission is funded by NASA's Science Mission Directorate as an Astrophysics Explorer Mission.

Jenkins, Jon M.↗

Sentinel-5P/TROPOMI and S-NPP/OMPS Data Support at GES DISC

The TROPspheric Monitoring Instrument (TROPOMI) on the Sentinel-5 Precursor (Sentinel-5P) is the first of the Atmospheric Composition Sentinels by the European Space Agency (ESA) that provides measurements of ozone, NO2, SO2, CH4, CO, formaldehyde, aerosols and cloud at high spatial, temporal and spectral resolutions. The early afternoon orbit of Sentinel-5P mission provides a strong synergy with the U.S. Suomi National Polar-orbiting Partnership (S-NPP) satellite, especially in that the S-NPP Ozone Monitoring and Profiling Suite (OMPS) facilitates high vertically resolved stratospheric and lower mesospheric ozone profiles. The NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) supports over a thousand data collections in the Focus Areas of Atmospheric Composition, Water & Energy Cycles, and Climate Variability and it is the Distributed Active Archive Center (DAAC) that is curating both offline Sentinel-5P TROPOMI and S-NPP OMPS Level-1B (L1B) and Level-2 (L2) products. Through its convenient and enhanced tools/services such as OPeNDAP and L2 Subsetting, GES DISC offers air quality remote sensing user communities facile solutions for complex Earth science data and applications. This presentation will demonstrate TROPOMI and OMPS products including earthview radiance, solar irradiance, and currently available L2 datasets, as well as easy ways to access, visualize and subset data. The implementation of the End User License Agreement (EULA) between NASA GES DISC and all data users accessing data at GES DISC will be emphasized as well.

TROPOMI↗

Evolution of the Earth Observing System (EOS) Data and Information System (EOSDIS)

One of the strategic goals of the U.S. National Aeronautics and Space Administration (NASA) is to "Develop a balanced overall program of science, exploration, and aeronautics consistent with the redirection of the human spaceflight program to focus on exploration". An important sub-goal of this goal is to "Study Earth from space to advance scientific understanding and meet societal needs." NASA meets this subgoal in partnership with other U.S. agencies and international organizations through its Earth science program. A major component of NASA s Earth science program is the Earth Observing System (EOS). The EOS program was started in 1990 with the primary purpose of modeling global climate change. This program consists of a set of space-borne instruments, science teams, and a data system. The instruments are designed to obtain highly accurate, frequent and global measurements of geophysical properties of land, oceans and atmosphere. The science teams are responsible for designing the instruments as well as scientific algorithms to derive information from the instrument measurements. The data system, called the EOS Data and Information System (EOSDIS), produces data products using those algorithms as well as archives and distributes such products. The first of the EOS instruments were launched in November 1997 on the Japanese satellite called the Tropical Rainfall Measuring Mission (TRMM) and the last, on the U.S. satellite Aura, were launched in July 2004. The instrument science teams have been active since the inception of the program in 1990 and have participation from Brazil, Canada, France, Japan, Netherlands, United Kingdom and U.S. The development of EOSDIS was initiated in 1990, and this data system has been serving the user community since 1994. The purpose of this chapter is to discuss the history and evolution of EOSDIS since its beginnings to the present and indicate how it continues to evolve into the future. this chapter is organized as follows. Sect. 7.2 provides a discussion of EOSDIS, its elements and their functions. Sect. 7.3 provides details regarding the move towards more distributed systems for supporting both the core and community needs to be served by NASA Earth science data systems. Sect. 7.4 discusses the use of standards and interfaces and their importance in EOSDIS. Sect. 7.5 provides details about the EOSDIS Evolution Study. Sect. 7.6 presents the implementation of the EOSDIS Evolution plan. Sect. 7.7 briefly outlines the progress that the implementation has made towards the 2015 Vision, followed by a summary in Sect. 7.8.

Ramapriyan, Hampapuram K.↗

Protein Data Bank (PDB): Fifty-three years young and having a transformative impact on science and society

This review article describes the co-evolution of structural biology as a discipline and the Protein Data Bank (PDB), established in 1971 as the first open-access data resource in biology by like-minded structural scientists. As the PDB archive grew in size and scope to encompass macromolecular crystallography, NMR spectroscopy, and cryo-electron microscopy, new technologies were developed to ingest, validate, curate, store, and distribute the information. Community engagement ensured that the needs of structural biologists (data depositors) and data consumers were met. Today, the archive houses more than 230,000 experimentally determined structures of proteins, nucleic acids, and macromolecular machines and their complexes with one another and small-molecule ligands. Aggregate costs of PDB data preservation are ~1% of the cost of structure determination. The enormous impact of PDB data on basic and applied research and education across the natural and medical sciences is presented and highlighted with illustrative examples. Enablement of de novo protein structure prediction (AlphaFold2, RoseTTAfold, OpenFold, etc.) is the most widely appreciated benefit of having a corpus of rigorously validated, expertly curated 3D biostructure data.

bioinformatics↗