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At least 847 records · Page 47

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DOE OSTI2013

Deadlock-free class routes for collective communications embedded in a multi-dimensional torus network

A computer implemented method and a system for routing data packets in a multi-dimensional computer network. The method comprises routing a data packet among nodes along one dimension towards a root node, each node having input and output communication links, said root node not having any outgoing uplinks, and determining at each node if the data packet has reached a predefined coordinate for the dimension or an edge of the subrectangle for the dimension, and if the data packet has reached the predefined coordinate for the dimension or the edge of the subrectangle for the dimension, determining if the data packet has reached the root node, and if the data packet has not reached the root node, routing the data packet among nodes along another dimension towards the root node.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2025

Myna: Connecting powder bed fusion build data to simulation tools for digital twin applications

Additive manufacturing (AM), as a digital process, can generate a detailed digital thread linking a part’s design and manufacturing to its operational performance. As AM systems advance, an increasing amount of process data is stored in manufacturing databases. In principle, this data can be utilized by simulation-based digital twin approaches, such as real-time process control and asynchronous post-processing guidance. However, few tools currently exist for systematically integrating digital thread data with computational tools. Here, in this study, we propose a software package, called Myna, for connecting data from powder bed fusion processes to simulation tools. The utility of such a platform is demonstrated using build data from the Oak Ridge National Laboratory Manufacturing Demonstration Facility “Peregrine v2023-10” public dataset to automatically configure and run 54 semi-analytical 3DThesis melt pool simulations, 78 numerical Additive FOAM melt pool simulations, and 3 ExaCA microstructure simulations. The simulated, spatially registered microstructures are then compared directly with electron backscatter diffraction characterization of the corresponding as-built part locations. The resulting simulated microstructure showed variation as a function of process parameters, particularly stripe width; however, the experimental data had little variation between the microstructure texture and grain size resulting from different processing conditions. Analysis of the discrepancies suggest that it is possible a two-phase ferritic-austenitic solidification model is needed to accurately predict grain size and texture for certain stainless steel 316L feedstock compositions under powder bed fusion conditions, providing direction for future research. As illustrated here, due to the number and complexity of the simulations involved in AM process-structure–property predictions, automated methods to connect process data and simulations will remain necessary tools for testing hypotheses and implementing digital twin applications.

Knapp, Gerald L. [Oak Ridge National Laboratory (O↗

DOE OSTI2025

Toward a persistent event-streaming system for high-performance computing applications

High-performance computing (HPC) applications have traditionally relied on parallel file systems and file transfer services to manage data movement and storage. Alternative approaches have been proposed that use direct communications between application components, trading persistence and fault tolerance for speed. Event-driven architectures, as popularized in enterprise contexts, present a compelling middle ground, avoiding the performance cost and API constraints of parallel file systems while retaining persistence and offering impedance matching between application components. However, adapting streaming frameworks to HPC workloads requires addressing challenges unique to HPC systems. This paper investigates the potential for a streaming framework designed for HPC infrastructures and use cases. We introduce Mofka, a persistent event-streaming framework designed specifically for HPC environments. Mofka combines the capabilities of a traditional streaming service with optimizations tailored to the HPC context, such as support for massively multicore nodes, efficient scaling for large producer-consumer workflows, RDMA-enabled high-performance network communications, specialized network fabrics with multiple links per node, and efficient handling of large scientific data payloads. Built using the Mochi suite of HPC data service components, Mofka provides a lightweight, modular, and high-performance solution for persistent streaming in HPC systems. We present the architecture of Mofka and evaluate its performance against Kafka and Redpanda using benchmarks on diverse platforms, including Argonne's Polaris and Oak Ridge's Frontier supercomputers, showing up to 8× improvement in throughput in some scenarios. We then demonstrate its utility in several real-world applications: a tomographic reconstruction pipeline, a workflow for the discovery of metal-organic frameworks for carbon capture, and the instrumentation of Dask workflows for provenance tracking and performance analysis.

HPC↗

DOE OSTI2017

Examples of Use of SINBAD Database for Nuclear Data and Code Validation

Benchmark experiments can serve several purposes and the availability of suitable experimental data is fundamental to ensure that modelling tools meet the requirements of nuclear industry and licensing needs. Essentially, they are used for: - validation of nuclear cross-section data, - validation of nuclear codes and models used, - qualification and training of users through benchmarking and code comparison exercises. The Shielding Integral Benchmark Archive and Database (SINBAD) project was started in the early 1990's at the OECD Nuclear Energy Agency Data Bank (NEA DB) and the Radiation Safety Information Computational Center (RSICC) as a collection of quality experiments for validating and benchmarking computer codes and data for radiation transport and shielding applications. Currently, the SINBAD database comprises over 100 benchmark compilations and evaluations of relevance to: - reactor shielding, pressure vessel dosimetry (48); - fusion blanket neutronics (31); - accelerator shielding (23). In order to facilitate their use, the data are organized in the standardized format structure. The index and the master document (called abstract) use the Hyper Text Markup Language (HTML) format with links to text files, figures, Portable Document Format (pdf) documents and computer code inputs. The format allows easy access and forward/backward navigation among the data and has proved to be suitable, general enough and above all easy (and low-cost) to maintain. In addition to the characterization of the radiation source, description of the shielding set-up, the instrumentation and the relevant detector measurements, most sets in SINBAD contain also the deterministic or Monte Carlo radiation transport computer model used for the interpretation of the experiment and, where available, results from uncertainty analysis. The set of primary documents used for the benchmark compilation and evaluation are provided in computer readable form. The database is intended for different types of users, including nuclear data evaluators, computer code developers, experiment designers and university students. SINBAD is available from the NEA Data Bank and RSICC (see https://www.oecdnea.org/science/wprs/shielding/sinbad/). Up to now several hundreds of SINBAD packages were distributed from the NEA DB and RSICC. Since 2011 the maintenance and further development of the database is coordinated in the scope of the OECD NEA Nuclear Science Committee (NSC) Working Party on Scientific Issues of Reactor Systems (WPRS) Expert Group on Radiation Transport and Shielding (EGRTS). A key objective of the group is to identify, evaluate and preserve experimental data on shielding benchmarks. The Expert Group maintains close links with the International Reactor Physics Experiment Evaluation (IRPhE) and International Criticality Safety Benchmark Evaluation (ICSBEP) projects, as well as in co-ordination with the JEFF and EFF NEA Data Bank projects and with the SATIF community of accelerator shielding specialists. In the last years, much effort was devoted to the quality review of the available benchmark information.

42 ENGINEERING↗

DOE OSTI2022

UAE6 - Wind Tunnel Tests Data - UAE6 - Sequence L - Raw Data

Sequence L: Step AOA, Parked (P) This sequence was designed to quantify the 3-D blade static angle-of-attack response in the absence of rotational influences by varying the blade pitch angle. This test sequence used an upwind, rigid turbine with a 0° cone angle. Wind speeds of 20 m/s and 30 m/s were used, and all data were collected at a yaw angle of 0°. The rotor was parked with the instrumented blade fixed at 0° azimuth, and the rotor lock was installed (see Appendix A). Blade and probe pressure measurements were collected. The teeter dampers were replaced with rigid links, and these two channels were flagged as not applicable by setting the measured values in the data file to -99999.99 Nm. The teeter link load cell was pre-tensioned to 40,000 N. The blade pitch angle ramped continuously at 0.18°/s over a wide range of increasing and decreasing pitch angles. A step sequence was also performed. The blade pitch was stepped 5°, the flow was allowed to stabilize, and the pitch angle was held for 8 seconds. Then the pitch angle step was repeated. Again, a wide range of pitch angles was obtained, both increasing and decreasing. The file lengths for this sequence varied from 5 to 10 minutes, depending on the pitch angle range. The file name convention used the initial letter L followed by two digits specifying wind speed, followed by 00 for yaw angle, followed by RU, RD, or ST, followed by the repetition digit. The angle-of-attack motion was differentiated by RU (ramp up), RD (ramp down), and ST (step down, then step up). This sequence is related to sequences K and R.

17 WIND ENERGY↗

DOE OSTI2019

Generation and characterization of carbon fiber microstructure in atomistic simulations

A clear understanding of carbon fiber (CF) microstructure is necessary for the development of high strength CFs. Here, we present an atomistic approach for generating and characterizing realistic mi- crostructures of CFs. Large-scale reactive molecular dynamics simulations are used to generate a set of distinct CF microstructures. Comprehensive characterization of the simulated microstructures is enabled by the development of a suite of computational structural analysis tools capable of evaluation of hy- bridization states of carbon atoms, populations and orientations of individual carbon rings, degree of graphitization, and pore size distribution. The calculation of X-ray diffraction profiles provides a direct link between the structural features of simulated samples and experimental data available for CFs. The CF generation algorithm is shown to produce microstructures with experimental densities and with structural characteristics matching those of PAN-based CFs. The key structural features affecting the properties of CFs, such as the relative fractions of graphitic, turbostratic and amorphous micro- constituents, degree of alignment, pore size distributions, and chemical cross-linking can be effectively controlled in simulations, thus enabling efficient exploration of structureeproperties relationships in CFs. The capabilities of the developed approach are illustrated by performing computational analysis of the mechanical deformation and fracture of CFs under axial tensile loading.

36 MATERIALS SCIENCE↗

DOE OSTI2018

Global Oil & Gas Infrastructure Features Database EDX Spatial Web Map

This submission offers a link to a web mapping application hosted instance of the Global Oil & Gas Features Database (GOGI), via EDX Spatial. This offers users with the ability to visualize, interact, and create maps with data of their choice, as well as download specific attributes or fields of view from the database. This data can also be downloaded as a File Geodatabse from EDX at https://edx.netl.doe.gov/dataset/global-oil-gas-features-database. Access the technical report describing how this database was produced using the following link: https://edx.netl.doe.gov/dataset/development-of-an-open-global-oil-and-gas-infrastructure-inventory-and-geodatabase” This data was developed using a combination of big data computing, custom search and data integration algorithms, and expert driven search to collect open oil and gas data resources worldwide. This approach identified over 380 data sets and integrated more than 4.8 million features into the GOGI database. Acknowledgements: This work was funded under the Climate and Clean Air Coalition (CCAC) Oil and Gas Methane Science Studies. The studies are managed by United Nations Environment in collaboration with the Office of the Chief Scientist, Steven Hamburg of the Environmental Defense Fund. Funding was provided by the Environmental Defense Fund, OGCI Companies (Shell, BP, ENI, Petrobras, Repsol, Total, Equinor, CNPC, Saudi Aramco, Exxon, Oxy, Chevron, Pemex) and CCAC.

gas↗

DOE OSTI2014

Insights from Smart Meters: The Potential for Peak-Hour Savings from Behavior-Based Programs

The rollout of smart meters in the last several years has opened up new forms of previously unavailable energy data. Many utilities are now able in real-time to capture granular, household level interval usage data at very high-frequency levels for a large proportion of their residential and small commercial customer population. This can be linked to other time and locationspecific information, providing vast, constantly growing streams of rich data (sometimes referred to by the recently popular buzz word, “big data”). Within the energy industry there is increasing interest in tapping into the opportunities that these data can provide.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2022

UAE6 - Wind Tunnel Tests Data - UAE6 - Sequence X - Raw Data

Sequence X: Elevated RPM (F) This test sequence used an upwind, rigid turbine with a 0° cone angle. The wind speed ranged from 5 m/s to 12 m/s, and yaw angles of ±30° were obtained. The blade pitch angle was 3°. The rotor rotated at 90 RPM. Blade pressure measurements were collected. The five-hole probes were removed and the plugs were installed. Plastic tape 0.03-mm-thick was used to smooth the interface between the plugs and the blade. The teeter dampers were replaced with rigid links, and these two channels were flagged as not applicable by setting the measured values in the data file to –99999.99 Nm. The teeter link load cell was pre-tensioned to 40,000 N. During post-processing, the probe channels were set to read -99999.99. As described in Appendix F, the hydrostatic correction derived for operation at 72 RPM was applied to these data.

17 WIND ENERGY↗

DOE OSTI2016

Brain Modulyzer: Interactive Visual Analysis of Functional Brain Connectivity

Here, we present Brain Modulyzer, an interactive visual exploration tool for functional magnetic resonance imaging (fMRI) brain scans, aimed at analyzing the correlation between different brain regions when resting or when performing mental tasks. Brain Modulyzer combines multiple coordinated views—such as heat maps, node link diagrams, and anatomical views—using brushing and linking to provide an anatomical context for brain connectivity data. Integrating methods from graph theory and analysis, e.g., community detection and derived graph measures, makes it possible to explore the modular and hierarchical organization of functional brain networks. Providing immediate feedback by displaying analysis results instantaneously while changing parameters gives neuroscientists a powerful means to comprehend complex brain structure more effectively and efficiently and supports forming hypotheses that can then be validated via statistical analysis. In order to demonstrate the utility of our tool, we also present two case studies—exploring progressive supranuclear palsy, as well as memory encoding and retrieval

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

Data‐Driven Insights into Rare Earth Mineralization: Machine Learning Applications Using Functional Material Synthesis Data

Understanding rare‐earth element (REE) mineralization mechanisms is essential for developing efficient separation strategies. Although the geochemical pathways that generate REE deposits are qualitatively known, quantitative links between specific conditions and mineralization outcomes remain limited. Herein, the repurpose laboratory REE hydrothermal synthesis data—originally collected for functional‐materials fabrication—as a surrogate for studying mineralization with data‐driven methods. The compiled 1,200+ hydrothermal reaction records and trained three machine‐learning models—K‐nearest neighbors (KNN), random forest (RF), and extreme gradient boosting (XGB)—to predict product elements and phases from precursors, additives, reaction conditions, and engineered features. Validation shows XGB achieves the highest accuracy. Feature importance indicates thermodynamic properties of cations and anions dominate model decisions. Correlations reveal positive relationships among precursor concentration, reaction time, pH, and temperature, consistent with classical crystallization behavior. XGB‐based regressors are built to predict crystallization temperature and pH from precursor/product attributes. Performance is strongest when similar training examples exist, while accuracy declines for underrepresented reactions, notably REE carbonates and heavy‐REE systems. Overall, the study shows that functional‐materials datasets can illuminate REE mineralization and provide priors for exploration and processing. Expanding datasets with less‐studied chemistries and conditions will improve generality and support deposit discovery and more efficient REE recovery.

feature importance analysis↗

DOE OSTI2024

Data and scripts associated with a manuscript investigating dissolved organic matter and microbial community linkages across seven globally distributed rivers

This data package is associated with the publication “Meta-metabolome ecology reveals that geochemistry and microbial functional potential are linked to organic matter development across seven rivers” submitted to Science of the Total Environment. This data package includes the data necessary to replicate the analyses presented within the manuscript to investigate dissolved organic matter (DOM) development across broad spatial distances and within divergent biomes. Specifically, we included the Fourier transform ion cyclotron mass spectrometry (FTICR-MS) data, geochemistry data, annotated metagenomic data, and results from ecological null modeling analyses in this data package. Additionally, we included the scripts necessary to generate the figures from the manuscript. Complete metagenomic data associated with this data package can be found at the National Center for Biotechnology (NCBI) under Bioproject PRJNA946291. This dataset consists of (1) four folders; (2) a file-level metadata (flmd) file; (3) a data dictionary (dd) file; (4) a factor sheet describing samples; and (5) a readme. The FTICR Data folder contains (1) the processed Fourier transform ion cyclotron mass spectrometry (FTICR-MS) data; (2) a transformation-weighted characteristics dendrogram generated from the FTICR-MS data; and (3) the script used to generate all FTICR-MS related figures. The Geochemical Data folder contains (1) the single geochemistry data file and (2) the R script responsible for generating associated figures. The Metagenomic Data folder contains (1) annotation information across different levels; (2) carbohydrate active enzyme (CAZyme) information from the dbCAN database (Yin et al., 2012); (3) phylogenetic tree data (FASTAs, alignments, and tree file); and (4) the scripts necessary to analyze all of these data and generate figures. The Null Modeling Data folder contains (1) data generated during null modeling for each river and all rivers combined and (2) the R scripts necessary to process the data. All files are .csv, .pdf, .tsv, .tre, .faa, .afa, .tree, or .R.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2018

Agulhas Current Properties Shape Microbial Community Diversity and Potential Functionality

Understanding the impact of oceanographic features on marine microbial ecosystems remains a major ecological endeavour. Here we assess microbial diversity, community structure and functional capacity along the Agulhas current system and the Subtropical convergence in the South Indian Ocean (SIO). Samples collected from the epipelagic, oxygen minimum and bathypelagic zones were analysed by 16S rRNA gene amplicon and metagenomic sequencing. In contrast to previous studies, we found high taxonomic richness in surface and deep water samples, but generally low richness for oxygen minimum zone communities. Beta-diversity analysis revealed significant dissimilarity between the three water depths. Most microbial communities were dominated by marine Gammaproteobacteria, with strikingly low levels of picocyanobacteria. Community composition was strongly influenced by specific environmental factors including depth, salinity, and the availability of both oxygen and light. Carbon, nitrogen and sulphur cycling capacity is the SIO was linked to several autotrophic and copiotrophic Alphaproteobacteria and Gammaproteobacteria. Taken together, our data suggest that the environmental conditions in the Agulhas current system, particularly depth-related parameters, substantially influence microbial community structure. While the capacity for biogeochemical cycling of nitrogen and sulphur is linked primarily by the dominant Gammaproteobacterial taxa, ecologically rare taxa drive carbon cycling.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2013

A Genome-Wide Association Study Suggests Novel Loci Associated with a Schizophrenia-Related Brain-Based Phenotype

Patients with schizophrenia and their siblings typically show subtle changes of brain structures, such as a reduction of hippocampal volume. Hippocampal volume is heritable, may explain a variety of cognitive symptoms of schizophrenia and is thus considered an intermediate phenotype for this mental illness. The aim of our analyses was to identify singlenucleotide polymorphisms (SNP) related to hippocampal volume without making prior assumptions about possible candidate genes. In this study, we combined genetics, imaging and neuropsychological data obtained from the Mind Clinical Imaging Consortium study of schizophrenia (n = 328). A total of 743,591 SNPs were tested for association with hippocampal volume in a genome-wide association study. Gene expression profiles of human hippocampal tissue were investigated for gene regions of significantly associated SNPs. None of the genetic markers reached genome-wide significance. However, six highly correlated SNPs (rs4808611, rs35686037, rs12982178, rs1042178, rs10406920, rs8170) on chromosome 19p13.11, located within or in close proximity to the genes NR2F6, USHBP1, and BABAM1, as well as four SNPs in three other genomic regions (chromosome 1, 2 and 10) had p-values between 6.75610 -6 and 8.3610 -7 . Using existing data of a very recently published GWAS of hippocampal volume and additional data of a multicentre study in a large cohort of adolescents of European ancestry, we found supporting evidence for our results. Furthermore, allelic differences in rs4808611 and rs8170 were highly associated with differential mRNA expression in the cis-acting region. Associations with memory functioning indicate a possible functional importance of the identified risk variants. Our findings provide new insights into the genetic architecture of a brain structure closely linked to schizophrenia. In silico replication, mRNA expression and cognitive data provide additional support for the relevance of our findings. Identification of causal variants and their functional effects may unveil yet unknown players in the neurodevelopment and the pathogenesis of neuropsychiatric disorders.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2013

Investigating the Link Between Radiologists Gaze, Diagnostic Decision, and Image Content

Objective: To investigate machine learning for linking image content, human perception, cognition, and error in the diagnostic interpretation of mammograms. Methods: Gaze data and diagnostic decisions were collected from six radiologists who reviewed 20 screening mammograms while wearing a head-mounted eye-tracker. Texture analysis was performed in mammographic regions that attracted radiologists attention and in all abnormal regions. Machine learning algorithms were investigated to develop predictive models that link: (i) image content with gaze, (ii) image content and gaze with cognition, and (iii) image content, gaze, and cognition with diagnostic error. Both group-based and individualized models were explored. Results: By pooling the data from all radiologists machine learning produced highly accurate predictive models linking image content, gaze, cognition, and error. Merging radiologists gaze metrics and cognitive opinions with computer-extracted image features identified 59% of the radiologists diagnostic errors while confirming 96.2% of their correct diagnoses. The radiologists individual errors could be adequately predicted by modeling the behavior of their peers. However, personalized tuning appears to be beneficial in many cases to capture more accurately individual behavior. Conclusions: Machine learning algorithms combining image features with radiologists gaze data and diagnostic decisions can be effectively developed to recognize cognitive and perceptual errors associated with the diagnostic interpretation of mammograms.

Tourassi, Georgia↗

DOE OSTI2014

SECARB Continued Characterization to Collect & Incorporate Data into Models

Data collection and analysis achievements include stratal slicing of seismic volume, core analyses and petrography, and hydrologic testing, and brine and gas geochemical analysis. This update provides links to publications and thesis that record the key findings of from continued data collection and incorporation into models.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2017

A New Generation of Standard Solar Models

We compute a new generation of standard solar models (SSMs) that includes recent updates on some important nuclear reaction rates and a more consistent treatment of the equation of state. Models also include a novel and flexible treatment of opacity uncertainties based on opacity kernels, required in light of recent theoretical and experimental works on radiative opacity. Two large sets of SSMs, each based on a different canonical set of solar abundances with high and low metallicity (Z), are computed to determine model uncertainties and correlations among different observables. We present detailed comparisons of high- and low-Z models against different ensembles of solar observables, including solar neutrinos, surface helium abundance, depth of the convective envelope, and sound speed profile. A global comparison, including all observables, yields a p-value of 2.7σ for the high-Z model and 4.7σ for the low-Z one. When the sound speed differences in the narrow region of 0.65<r/R{sub ⊙}<0.70 are excluded from the analysis, results are 0.9σ and 3.0σ for high- and low-Z models respectively. These results show that high-Z models agree well with solar data but have a systematic problem right below the bottom of the convective envelope linked to steepness of molecular weight and temperature gradients, and that low-Z models lead to a much more general disagreement with solar data. We also show that, while simple parametrizations of opacity uncertainties can strongly alleviate the solar abundance problem, they are insufficient to substantially improve the agreement of SSMs with helioseismic data beyond that obtained for high-Z models due to the intrinsic correlations of theoretical predictions.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

UAE6 - Wind Tunnel Tests Data - UAE6 - Sequence 7 - Raw Data

Sequence 7: Shroud Operating (P) This test sequence used a downwind, rigid turbine with a 3.4° cone angle. The wind speed ranged from 5 m/s to 25 m/s. Turntable angles from 0° to 30° were achieved, but the yaw error angle was maintained at 0° by adjusting the nacelle yaw. The blade tip pitch was 3°. The rotor rotated at 72 RPM. Blade and probe pressure measurements were collected. The teeter dampers were replaced with rigid links, and these two channels were flagged as not applicable by setting the measured values in the data file to –99999.99 Nm. The teeter link load cell was pre-tensioned to 40,000 N. An airfoil-shaped aluminum shroud was placed on the tower below the 34% span five-hole probe. It extended below the 91% span five-hole probe. The turntable angle was adjusted to position the shroud at various angles relative to the flow, but the turbine yaw error angle was maintained at 0°. Two additional points were collected where the turntable angle was 0°, and the turbine yaw angle was 20° (71000200) or -20° (710M0200).

17 WIND ENERGY↗