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At least 847 records · Page 47

Molecular simulations and NMR reveal how lipid fluctuations affect membrane mechanics

Lipid bilayers form the main matrix of functional cell membranes, and their dynamics underlie a host of physical and biological processes. Here we show that elastic membrane properties and collective molecular dynamics (MD) are related by the mean-square amplitudes (order parameters) and relaxation rates (correlation times) of lipid acyl chain motions. We performed all-atom MD simulations of liquid-crystalline bilayers that allow direct comparison with carbon-hydrogen (CH) bond relaxations measured with NMR spectroscopy. Previous computational and theoretical approaches have assumed isotropic relaxation, which yields inaccurate description of lipid chain dynamics and incorrect data interpretation. Instead, the new framework includes a fixed bilayer normal (director axis) and restricted anisotropic motion of the CH bonds in accord with their segmental order parameters, enabling robust validation of lipid force fields. Simulated spectral densities of thermally excited CH bond fluctuations exhibited well-defined spin-lattice (Zeeman) relaxations analogous to those in NMR measurements. Their frequency signature could be fit to a simple power-law function, indicative of nematic-like collective dynamics. Moreover, calculated relaxation rates scaled as the squared order parameters yielding an apparent K C modulus for bilayer bending. Our results show a strong correlation with K C values obtained from solid-state NMR studies of bilayers without and with cholesterol as validated by neutron spin-echo measurements of membrane elasticity. The simulations uncover a critical role of interleaflet coupling in membrane mechanics and thus provide important insights into molecular sites of emerging elastic properties within lipid bilayers.

59 BASIC BIOLOGICAL SCIENCES↗

The distant outer gas arm between l = 35° and l = 45°

The Galactic plane has been mapped from l = 34.°75 to 45.°25 and b = −5.°25 to 5.°25 in the CO (J = 1–0) emission with the 13.7 m telescope of the Purple Mountain Observatory. The unbiased survey covers a large area of 110 square degrees sampled every 30″ with a velocity resolution of ∼0.2 km s{sup −1}. In this paper, we present the result of an unbiased CO survey of this longitude and latitude range in the velocity range from −60 to −10 km s{sup −1}. Over 500 molecular clouds (MCs) are picked out from the {sup 12}CO (J = 1–0) emission, and 131 of these MCs are associated with {sup 13}CO emission. The distant MCs, which lie beyond the solar circle and are mostly concentrated in the Galactic plane, trace the large-scale molecular gas structure over 10 degrees of Galactic azimuth. We find that the distribution of the distant MCs can be well fitted by a Gaussian function with a full width at half maximum (FWHM) of 0.°7 with the Galactic latitude. We suggest that the CO emission of the segment is from the Outer Arm. The physical mid-plane traced by the Outer Arm seems to be slightly displaced from the IAU-defined plane on a large scale, which could be explained by the warped plane at large Galactocentric distances of ≳10 kpc and the apparent tilted mid-plane to the projected IAU-defined plane caused by the Sun’s z-height above the disk for distances near and within the Solar circle. After removing the effect of the warp and tilted structure, the scale height of the MCs in the Outer Arm is about 0.°6 or 160 pc at a heliocentric distance of 15 kpc. If the inner plane of our Galaxy is flat, we can derive an upper limit of the Sun’s offset of ∼17.1 pc above the physical mid-plane of the Milky Way. We also discuss the correlations between the physical parameters of the distant MCs, which is quite consistent with the result of other studies of this parameter.

79 ASTRONOMY AND ASTROPHYSICS↗

Cylinder-temperature correlation of a single-cylinder liquid-cooled engine

An analysis based on nonboiling forced-convection heat-transfer theory is made of the cooling processes in liquid-cooled engine cylinders. Semiempirical equations that relate the average head and barrel temperatures with the primary engine and coolant parameters are derived. A correlation method based on these equations is applied to data obtained from previously reported investigations, which were conducted over large ranges of engine and coolant conditions with two liquid-cooled cylinders using water and various aqueous ethylene glycol solutions as coolants. Upon evaluation of empirical factors, an equation for the cylinder-head temperature as a function of the engine operating conditions and the flow rate, temperature, and physical properties of the coolants is obtained, which represents the data with good accuracy.

Pinkel, Benjamin↗

The prediction of AE, ap, and Dst at time lags between 0 and 30 hours

The magnetic activity indexes AE, ap, and Dst are correlated with approximately 35,000 hours of interplanetary plasma and magnetic field measurements acquired near the Earth (assembled by NASA/NSSDC into a composite data sat). Lag times between the indexes and solar wind parameters ranged from 0 to 30 hours. Correlations at lags less than 6 hours yield results in agreement with previous studies. At greater lags, the correlation coefficients between the solar wind parameters and AE and ap approach these parameters' autocorrelation (persistence) values. For Dst the correlation with solar wind parameters is lower than that with AE and ap in the 3 to 4 hour lag range whereas the autocorrelation of Dst is significantly higher over the entire 0 to 30 hour lag range. The implications of these differences between AE, ap, and Dst are discussed in terms of persistence of solar wind structure.

Smart, D. F.↗

The Influence of Friction Stir Weld Tool Form and Welding Parameters on Weld Structure and Properties: Nugget Bulge in Self-Reacting Friction Stir Welds

Although friction stir welding (FSW) was patented in 1991, process development has been based upon trial and error and the literature still exhibits little understanding of the mechanisms determining weld structure and properties. New concepts emerging from a better understanding of these mechanisms enhance the ability of FSW engineers to think about the FSW process in new ways, inevitably leading to advances in the technology. A kinematic approach in which the FSW flow process is decomposed into several simple flow components has been found to explain the basic structural features of FSW welds and to relate them to tool geometry and process parameters. Using this modelling approach, this study reports on a correlation between the features of the weld nugget, process parameters, weld tool geometry, and weld strength. This correlation presents a way to select process parameters for a given tool geometry so as to optimize weld strength. It also provides clues that may ultimately explain why the weld strength varies within the sample population.

Schneider, Judy↗

Sequential Deposition of Organic Films with Eco‐Compatible Solvents Improves Performance and Enables Over 12%‐Efficiency Nonfullerene Solar Cells

Abstract Casting of a donor:acceptor bulk‐heterojunction structure from a single ink has been the predominant fabrication method of organic photovoltaics (OPVs). Despite the success of such bulk heterojunctions, the task ofcontrolling the microstructure in a single casting process has been arduous and alternative approaches are desired. To achieve OPVs with a desirable microstructure, a facile and eco‐compatible sequential deposition approach is demonstrated for polymer/small‐molecule pairs. Using a nominally amorphous polymer as the model material, the profound influence of casting solvent is shown on the molecular ordering of the film, and thus the device performance and mesoscale morphology of sequentially deposited OPVs can be tuned. Static and in situ X‐ray scattering indicate that applying (R)‐(+)‐limonene is able to greatly promote the molecular order of weakly crystalline polymers and form the largest domain spacing exclusively, which correlates well with the best efficiency of 12.5% in sequentially deposited devices. The sequentially cast device generally outperforms its control device based on traditional single‐ink bulk‐heterojunction structure. More crucially, a simple polymer:solvent interaction parameter χ is positively correlated with domain spacing in these sequentially deposited devices. These findings shed light on innovative approaches to rationally create environmentally friendly and highly efficient electronics.

Ye, Long↗

Performance of biologically inspired algorithms tuned on TiO 2 nanoparticle benchmark system

Biologically inspired optimization algorithms (BIOA), such as particle swarm optimization (PSO) and differential evolution (DE), are often applied to a specific problem with the tacit assumptions that each algorithm will have a unique set of “ideal” tuning parameters that provide “best” performance, and that, once tuned, two different optimization algorithms ought to exhibit distinct performance. This work tests those assumptions by systematically comparing PSO and DE applied to identify stable and metastable configurations of a benchmark system, a titania dimer Ti 2 O 4 , whose energy is described by a modified Matsui-Akaogi pairwise potential. The hypotheses (H) are formally expressed as: (H1) for both PSO and DE there exists a unique, optimal set of tuning parameters that maximize its performance on a given problem; (H2) when running two different BIOAs, one algorithm must demonstrate superior performance over the other. By identifying and studying an approximate Pareto-optimal set of tuning parameters for DE and PSO, H1 is shown to be strictly false for DE, and tentatively false for PSO, while H2 is shown to be false with respect to certain statistics. Here, we further investigate the correlations between key tuning parameters and algorithm performance. Our conclusion may be implemented to further optimize and develop BIOAs applied to materials systems.

36 MATERIALS SCIENCE↗

Correlated energy uncertainties in reaction rate calculations

Monte Carlo methods can be used to evaluate the uncertainty of a reaction rate that arises from many uncertain nuclear inputs. However, until now no attempt has been made to find the effect of correlated energy uncertainties in input resonance parameters. Our goal is to investigate the impact of correlated resonance energy uncertainties on reaction rates. Using a combination of numerical and Monte Carlo variation of resonance energies, the effect of correlations are investigated. Five reactions are considered: two fictional, illustrative cases and three reactions whose rates are of current interest. The effect of correlations in resonance energies depends on the specific reaction cross section and temperatures considered. When several resonances contribute equally to a reaction rate, and when they are located on either side of the Gamow peak, correlations between their energies dilute their effect on reaction rate uncertainties. If they are both located above or below the maximum of the Gamow peak, however, correlations between their resonance energies can increase the reaction rate uncertainties. This effect can be hard to predict for complex reactions with wide and narrow resonances contributing to the reaction rate.

79 ASTRONOMY AND ASTROPHYSICS↗

Calculated covariance matrices for fission product yields using BeoH

Fission product yields (FPY) are important for a variety of applications (reactor neutronics, spent fuel, dosimetry, radiochemistry, etc.) and are currently included in many of the evaluated libraries around the world. The FPYs in the current US evaluation, ENDF/B-VIII.0, are mainly based on the 1994 evaluation of England and Rider and have only had slight updates—such as the inclusion of a 2 MeV point for 239 Pu—since their development. Additionally, only mean values and uncertainties are included in the evaluation, not full correlations. Los Alamos National Laboratory, in collaboration with several other institutes, has been working on an updated evaluation for the FPYs of 239 Pu(n,f), 235 U(n,f), 238 U(n,f), and 252 Cf(sf) using the deterministic, Hauser-Feshbach, fission fragment decay code, BeoH. BeoH calculates the FPYs consistently with many other prompt and delayed fission observables, explicitly taking into account multi-chance fission and ensuring consistency between observables. In addition to providing updated means and uncertainties for the FPYs on a pointwise energy grid from thermal to 20 MeV, we calculate correlations between all FPYs at each incident energy and across incident energies. Here, we discuss the development of these covariance matrices, differences in the correlations between FPYs based on the parameters that are included in the model optimization, and correlations across incident energies for neutron-induced fission.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Applications of flow models to the generation of correlated lattice QCD ensembles

Machine-learned normalizing flows can be used in the context of lattice quantum field theory to generate statistically correlated ensembles of lattice gauge fields at different action parameters. This work demonstrates how these correlations can be exploited for variance reduction in the computation of observables. Three different proof-of-concept applications are demonstrated using a novel residual flow architecture: continuum limits of gauge theories, the mass dependence of QCD observables, and hadronic matrix elements based on the Feynman–Hellmann approach. In all three cases, it is shown that statistical uncertainties are significantly reduced when machine-learned flows are incorporated as compared with the same calculations performed with uncorrelated ensembles or direct reweighting. Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Solar Wind Influence on the Oxygen Content of Ion Outflow in the High-Altitude Polar Cap During Solar Minimum Conditions

We correlate solar wind and interplanetary magnetic field (IMF) properties with the properties of O(+) and H(+) during early 1996 (solar minimum) at altitudes between 5.5 and 8.9 R(sub E) geocentric using the Thermal Ion Dynamics Experiment (TIDE) on the Polar satellite. Throughout the high-altitude polar cap we observe H(+) to be more abundant than O(+). O(+) is found to be more abundant at lower latitudes when the solar wind speed is low (and Kp is low), while at higher solar wind speeds (and high Kp), O(+) is observed across most of the polar cap. The O(+) density and parallel flux are well organized by solar wind dynamic pressure, both increasing with solar wind dynamic pressure. Both the O(+) density and parallel flux have positive correlations with both V(sub SW)B(sub IMF) and E(sub SW). No correlation is found between O(+) density and IMF Bz, although a nonlinear relationship with IMF By is observed, possibly due to a strong linear correlation with the dynamic pressure. H(+) is not as highly correlated with solar wind and IMF parameters, although H(+) density and parallel flux are negatively correlated with IMF By and positively correlated with both V(sub SW)B(sub IMF) and E(sub SW). In this solar minimum data set, H(+) is dominant, so that contributions of this plasma to the plasma sheet would have very low O(+) to H(+) ratios.

Elliott, H. A.↗

DESI-DR1 $3 \times 2$-pt analysis: consistent cosmology across weak lensing surveys

We present a joint cosmological analysis of projected galaxy clustering observations from the Dark Energy Spectroscopic Instrument Data Release 1 (DESI-DR1), and overlapping weak gravitational lensing observations from three datasets: the Kilo-Degree Survey (KiDS-1000), the Dark Energy Survey (DES-Y3), and the Hyper-Suprime-Cam Survey (HSC-Y3). This combination of large-scale structure probes allows us to measure a set of $3 \times 2$-pt correlation functions, breaking the degeneracies between parameters in cosmological fits to individual observables. We obtain mutually-consistent constraints on the parameter $S_8 = σ_8 \sqrt{Ω_{\rm m}/0.3} = 0.786^{+0.022}_{-0.019}$ from the combination of DESI-DR1 and DES-Y3, $S_8 = 0.760^{+0.020}_{-0.018}$ from KiDS-1000, and $S_8 = 0.771^{+0.026}_{-0.027}$ from HSC-Y3. These parameter determinations are consistent with fits to the Planck Cosmic Microwave Background dataset, albeit with $1.5-2σ$ lower values in the $S_8-Ω_{\rm m}$ plane. We perform our analysis with a unified pipeline tailored to the requirements of each cosmic shear survey, which self-consistently determines cosmological and astrophysical parameters. We generate an analytical covariance matrix for the correlation data including all cross-covariances between probes, and we design a new blinding procedure to safeguard our analysis against confirmation bias, whilst leaving goodness-of-fit statistics unchanged. Our study is part of a suite of papers that present joint cosmological analyses of DESI-DR1 and weak gravitational lensing datasets.

Porredon, A. [Madrid, CIEMAT; Edinburgh U., Inst. ↗

Estimation of micro-Hall-Petch coefficients for prismatic slip system in Mg-4Al as a function of grain boundary parameters

Grain size strengthening, referred to as the Hall-Petch effect, is a common strategy to improve the yield strength of magnesium (Mg) alloys. Several experimental studies have reported that the Hall-Petch slope strongly depends on the texture of the alloy. This effect arises from altering grain boundaries (GBs) resistance to different slip systems to transfer across adjacent grains. The grain boundary barrier strength of certain grain boundaries to basal slip, referred to as basal micro-Hall-Petch, was investigated in the previous work. Here in this study, the micro-Hall-Petch coefficient values for the prismatic slip $(k^{prismatic}_{μ})$ in Mg-4Al and their correlation with the grain boundary parameters were investigated. An experimental method was developed to initiate the prismatic slip band at low-stress levels. High-resolution electron backscatter diffraction (HR-EBSD) was used to measure the residual stress tensor, from which the resolved shear stress ahead of blocked prismatic slip bands was computed for seven different grain boundaries. $(k^{prismatic}_{μ})$ values for each individual GB were calculated by coupling the stress profile information with a continuum dislocation pile-up model. The $(k^{prismatic}_{μ})$ values vary from 0.138 MPa.m 1/2 to 0.685 MPa. m 1/2 which are almost three times larger than the calculated values for the basal micro-Hall-Petch. The $(k^{prismatic}_{μ})$ values were correlated with the GB parameters, and a functional relationship depending on the two most effective angles, the angle between the traces of the slip planes on the GB plane ($\phi$) and the angle between incoming and outgoing slip directions (κ), was proposed to estimate the Hall-Petch barrier for prismatic slip system. The work provides coefficients that can be supplied as input to crystal plasticity models to couple the effect of texture and grain size effectively.

36 MATERIALS SCIENCE↗

A multiscale insight into the growth of h-BN: effect of the enclosure

Abstract There is a lack of knowledge on the fundamental growth mechanisms governing the characteristics of 2D materials synthesized by the chemical vapor deposition (CVD) technique and their correlation with experimentally controllable parameters, which hindered their wafer-scale synthesis. Here, we pursued an analytical and computational approach to access the system states that are not experimentally viable to address these critical needs. We developed a multiscale computational framework correlating the macroscale heat and mass flow with the mesoscale morphology of the as-grown 2D materials by solving the coupled system of heat/mass transfer and phase-field equations. We used hexagonal boron nitride (h-BN) as our model material and investigated the effect of substrate enclosure on its growth kinetics and final morphology. We revealed a lower concentration with a more uniform distribution on the substrate in an enclosed-growth than open-growth. It leads to a more uniform size distribution of the h-BN islands, consistent with existing experimental investigations.

Materials Science↗

Probing configurational disorder in ZnGeN 2 using cluster-based Monte Carlo

ZnGeN 2 is sought as a semiconductor with comparable lattice constant to GaN and tunable band gap for integration in optoelectronic devices. Configurational disorder on the cation sublattice of ZnGeN 2 can strongly modify the electronic structure compared to the ordered material, and both ordered and disordered forms of ZnGeN 2 are candidates for light-emitting diodes and other emitters. The nonisovalent character of the disordered species (Zn 2+ and Ge 4+ ) subjects the cation ordering to strong short-range order effects. To model these effects, we use Monte Carlo (MC) simulations utilizing a cluster expansion to approximate formation enthalpy. Representative disordered configurations in 1024-atom supercells are relaxed in density functional theory calculations. From the MC structures, we extract a short-range order parameter (the N-cation coordination motif), and two long-range order parameters (Bragg-Williams and stretching parameters), and examine their correlations. We perform a thermodynamic integration to determine the mixing entropy and free energy. ZnGeN 2 exhibits a first-order phase transition with pronounced discontinuities in enthalpy and entropy, as well as in the structural order parameters. We discuss the relationship between the effective temperature used in the MC simulation and the growth temperatures in experiment in relation to the crossover from the nonequilibrium to the equilibrium growth regime. This work expands on current models of site disorder in ZnGeN 2 and provides atomic structure models with a systematic variation of the degree of cation disorder.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

The application of neural networks to the SSME startup transient

Feedforward neural networks were used to model three parameters during the Space Shuttle Main Engine startup transient. The three parameters were the main combustion chamber pressure, a controlled parameter, the high pressure oxidizer turbine discharge temperature, a redlined parameter, and the high pressure fuel pump discharge pressure, a failure-indicating performance parameter. Network inputs consisted of time windows of data from engine measurements that correlated highly to the modeled parameter. A standard backpropagation algorithm was used to train the feedforward networks on two nominal firings. Each trained network was validated with four additional nominal firings. For all three parameters, the neural networks were able to accurately predict the data in the validation sets as well as the training set.

Meyer, Claudia M.↗

The application of neural networks to the SSME startup transient

Feedforward neural networks were used to model three parameters during the Space Shuttle Main Engine startup transient. The three parameters were the main combustion chamber pressure, a controlled parameter, the high pressure oxidizer turbine discharge temperature, a redlined parameter, and the high pressure fuel pump discharge pressure, a failure-indicating performance parameter. Network inputs consisted of time windows of data from engine measurements that correlated highly to the modeled parameter. A standard backpropagation algorithm was used to train the feedforward networks on two nominal firings. Each trained network was validated with four additional nominal firings. For all three parameters, the neural networks were able to accurately predict the data in the validation sets as well as the training set.

Meyer, Claudia M.↗

Machine learning Frenkel Hamiltonian parameters to accelerate simulations of exciton dynamics

In this manuscript, we develop multiple machine learning (ML) models to accelerate a scheme for parameterizing site-based models of exciton dynamics from all-atom configurations of condensed phase sexithiophene systems. This scheme encodes the details of a system’s specific molecular morphology in the correlated distributions of model parameters through the analysis of many single-molecule excited-state electronic-structure calculations. These calculations yield excitation energies for each molecule in the system and the network of pair-wise intermolecular electronic couplings. In this work, we demonstrate that the excitation energies can be accurately predicted using a kernel ridge regression (KRR) model with Coulomb matrix featurization. We present two ML models for predicting intermolecular couplings. The first one utilizes a deep neural network and bi-molecular featurization to predict the coupling directly, which we find to perform poorly. The second one utilizes a KRR model to predict unimolecular transition densities, which can subsequently be analyzed to compute the coupling. We find that the latter approach performs excellently, indicating that an effective, generalizable strategy for predicting simple bimolecular properties is through the indirect application of ML to predict higher-order unimolecular properties. Such an approach necessitates a much smaller feature space and can incorporate the insight of well-established molecular physics.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗