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At least 865 records · Page 48

Crystal structure of B acillus anthracis virulence regulator AtxA and effects of phosphorylated histidines on multimerization and activity: AtxA multimerization, phosphorylation and activity

The Bacillus anthracis virulence regulator AtxA controls transcription of the anthrax toxin genes and capsule biosynthetic operon. AtxA activity is elevated during growth in media containing glucose and CO2/bicarbonate, and there is a positive correlation between the CO2/bicarbonate signal, AtxA activity and homomultimerization. AtxA activity is also affected by phosphorylation at specific histidines. We show that AtxA crystallizes as a dimer. Distinct folds associated with predicted DNA-binding domains (HTH1 and HTH2) and phosphoenolpyruvate: carbohydrate phosphotransferase system-regulated domains (PRD1 and PRD2) are apparent. We tested AtxA variants containing single and double phosphomimetic (HisAsp) and phosphoablative (HisAla) amino acid changes for activity in B.anthracis cultures and for protein-protein interactions in cell lysates. Reduced activity of AtxA H199A, lack of multimerization and activity of AtxAH379D variants, and predicted structural changes associated with phosphorylation support a model for control of AtxA function. We propose that (i) in the AtxA dimer, phosphorylation of H199 in PRD1 affects HTH2 positioning, influencing DNA-binding; and (ii) phosphorylation of H379 in PRD2 disrupts dimer formation. The AtxA structure is the first reported high-resolution full-length structure of a PRD-containing regulator, and can serve as a model for proteins of this family, especially those that link virulence to bacterial metabolism.

59 BASIC BIOLOGICAL SCIENCES↗

Effect of Annealing on Structural, Textural, Thermal, Magnetic, and Luminescence Properties of Calcium Fluoride Nanoparticles

Mesoporous nanocrystalline CaF{sub 2} powder was produced by pulsed electron beam evaporation (PEBE) in vacuum. The specific surface area (SSA) of CaF{sub 2} nanopowder (NP) reached 88.7 m{sup 2}/g. The effect of in-air thermal annealing in the temperature range of 200–900°C on the particle size, morphology, textural, thermal, magnetic, and luminescence properties of NPs is studied. A strong deviation from stoichiometry is observed in produced nanoparticles and a significant increase in the SSA after annealing at 200°C. The obtained CaF{sub 2} NP shows ferromagnetic (FM) behavior. The FM response appearance can be explained by the formation of structural and radiation defects. An analysis of pulsed cathodoluminescence (PCL) and magnetization curves of CaF{sub 2} NPs allows conclusions about their interrelation.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Effect of neodymium doping on structure, electrical and optical properties of nanocrystalline ZnO

In this paper, we report effect of Nd doping on structure, electrical and optical properties of nanocrystalline ZnO prepared through a modified ceramic route. The X-ray diffraction and transmission electron microscopy studies reveal that annealed samples are single phase, pure nanocrystalline ZnO. The optical band gap for different compositions, estimated from ultraviolet-visible spectroscopy study, shows a little increasing tendency while doped with Nd for the samples annealed at lower temperature. The dc electrical conductivity of the samples decreases with the increase in Nd concentration. The ac electrical measurements prove the hopping conduction as the dominant mechanism. The results are being explained on the basis of band structural change due to Nd doping in the host lattice and by Correlated Barrier Hopping model. - Highlights: Black-Right-Pointing-Pointer Particle size increases when it is doped (from XRD). Black-Right-Pointing-Pointer XRD peak shifted to lower angle when doped. Black-Right-Pointing-Pointer The dc conductivity decreases with the increase of Nd dopant concentrations. Black-Right-Pointing-Pointer The temperature dependent ac conductivity follows the universal power law.

36 MATERIALS SCIENCE↗

Effect of Tuning the Structure on the Optical and Magnetic Properties by Various Transition Metal Doping in ZnO/TM (TM = Fe, FeCo, Cr, and Mn) Thin Films

We have investigated in this work the physical, optical, electronic, and the magnetic behavior (Curie temperature, magnetic moment) of Zn.1-x.MxO (M = Fe 5%, Co 1%, Cr 5%, and Mn 5%), diluted magnetic semiconductors (DMSs). The samples were deposited on glass substrate by the spray pyrolysis technique, and the results of the x-ray diffraction (XRD) of the prepared substrates was used to prove the incorporation of the dopants into the ZnO lattice host; the ferromagnetic and the antiferromagnetic state competitions and their effects on the physical, magnetic, and optical properties, were investigated. The electronic structure and magnetic properties of transition metal (TM) defects, were investigated in detail, by using the Korringa–Kohn–Rostoker (KKR) method combined with the coherent potential approximation (CPA). As a result, doping by TM impurities induce the ferromagnetism with different competitions between the ferromagnetic and antiferromagnetic states, which affects the physical properties of the TM (Fe, Fe/Co, Cr, and Mn)-doped ZnO, with a Curie temperature closer to room-temperature ferromagnetic.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Confinement effects on the solvation structure of solvated alkaline metal cations in a single-digit 1T-MoS 2 nanochannel: A first-principles study

Confinement plays an important role in determining ion transport in porous materials, which, in turn, may influence the performance of many energy storage and desalination devices. In this work, we combined density functional theory (DFT) with an implicit solvation model and ab initio molecular dynamics (AIMD) to investigate the effects of nanoconfinement on several solvated alkaline metal cations in a single-digit 1T-MoS 2 nanochannel. Our DFT calculations with a solvation model indicated that cations with stronger hydration energy introduce a higher number of co-intercalated water molecules into the channel, consistent with early experimental observation obtained for MXene (2D transition metal carbide) channels. The predicted optimal water numbers for the cations were then used for AIMD simulations that explicitly include the effects of the solvent. When compared with the cations in bulk solution, our simulations showed that the hydration structure and coordination number (CN) of the solvated cations confined in the MoS 2 channel can be significantly altered. Further, we found that larger cations with weaker hydration energy (K + , Rb + , and Cs + ) exhibited a distinctive CN decrease under confinement, while smaller cations (Li + and Na + ) retained a similar hydration shell as in the bulk solution. More specifically, the hydration shell of large cations (K + , Rb + , and Cs + ) in MoS 2 showed similar features of the coordination angle to the bulk, which suggests the partially broken hydration shell with no geometry change under confinement. Our simulations provided insights into the change of the hydration structure of alkaline metal cations under confinement, which may have important implications on their transport in the 1T-MoS 2 channel.

36 MATERIALS SCIENCE↗

Photothermal deflection technique investigation of thermal annealing effects of AlGaAsSb/GaSb laser structure: Non-radiative recombination parameters enhancement

Highlights: • Photothermal deflection technique is performed to mesuaure the nonradiative recombination parameters of AlGaAsSb/GaSb. • After annealing time process, nonradiative recombination parameters of AlGaAs / GaSb have been enhanced. • The largest nonradiative recombination values have been found for AlGaAsSb/GaSb annealed for 60 min - Abstract: Photothermal deflection technique (PTD) is used to investigate the effects of thermal annealing time on nonradiative recombination parameters i.e. nonradiative lifetime of minority carriers, electronic diffusion coefficient, and surface and interface recombination velocity of AlGaAsSb/GaSb laser structure. The extraction of the electronic parameters are performed by PTD technique through extensive modeling by fitting the experimental photothermal signal to the corresponding theoretical ones. We have found that nonradiative recombination parameters have been enhanced by annealing time. These results are very promising for improvement of active layer used for vertical-cavity surface-emitting lasers (VCSELs).

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Joule heating-induced coexisted spin Seebeck effect and spin Hall magnetoresistance in the platinum/Y{sub 3}Fe{sub 5}O{sub 12} structure

Spin Seebeck effect (SSE) and spin Hall magnetoresistance (SMR) are observed simultaneously in the Pt/Y{sub 3}Fe{sub 5}O{sub 12} hybrid structure when thermal gradient is produced by Joule heating. According to their dependences on applied current, these two effects can be separated. Their dependence on heating power and magnetic field is systematically studied. With the increase of heating power, the SSE enhances linearly, whereas the SMR decreases slowly. The origin of the spin currents is further analyzed. The heating power dependences of the spin currents associated with the SSE and the SMR are found to be different.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Influence of Ga content on the structure and anomalous Hall effect of Fe{sub 1−x}Ga{sub x} thin films on GaSb(100)

The Fe{sub 1−x}Ga{sub x} thin films (x = 0.4, 0.5) have been grown on GaSb(100) substrate using molecular beam epitaxy. An epitaxial film with bcc α-Fe crystal structure (A2) is observed in Fe{sub 0.6}Ga{sub 0.4} film, while an impure Fe{sub 3}Ga phase with DO{sub 3} structure is appeared in Fe{sub 0.5}Ga{sub 0.5} film. The saturated magnetizations at room temperature are observed to be 570 emu/cm{sup 3} and 180 emu/cm{sup 3} and the coercivities to be 170 and 364 Oe for Fe{sub 0.6}Ga{sub 0.4} and Fe{sub 0.5}Ga{sub 0.5}, respectively. A hysteresis trend in Hall resistance vs. magnetic field is observed for Fe{sub 0.5}Ga{sub 0.5} film. However, there is a weak hysteresis noticed in Fe{sub 0.4}Ga{sub 0.6} thin film.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Doping Effects on Multivalence States, Electronic Structure, and Optical Band Gap in LaCrO 3 under Varied Atmospheres: An Integrated Experimental and Density Functional Theory Study

Doping effects on the valence state, electronic structure, and optical band and the effects on electrical conductivity were studied on the doped lanthanum chromite (LaCrO 3 ) system. The specific compositions studied were La 1–x Ca x CrO 3 (LCCx), La 1–x Sr x CrO 3 (LSCx), and La 0.8 Sr 0.2 Cr 1–x Mn x O 3 (LSCMx) (0.1 ≤ x ≤ 0.4). The powders were synthesized using a modified Pechini sol–gel method, and the ceramic samples were densified using a reactive sintering method resulting in densities >96% theoretical. X-ray photoelectron spectroscopy (XPS) was completed to characterize the defect states and cationic valence compensation as a result of divalent (Ca 2+ or Sr 2+ ) and trivalent (Mn 3+ ) substitutions. XPS was completed for samples tested in oxidizing and reducing atmospheres (up to 1500 °C), which provided insights into the oxidation state transitions induced by the Ca 2+ and Sr 2+ dopants. The work notably demonstrated, for the first time, the oxidation/reduction transitions of Cr 4+ to Cr 3+ in Sr 2+ /Mn 3+ co-doped samples under reducing atmospheres. Reflectance UV–vis spectrophotometry optical band gap measurements were also completed for the same materials; a decrease in the optical band gap (2.81–3.12 eV) was shown with increased substitution, suggesting electronic structure modifications in the LaCrO 3 perovskite. Density functional theory calculations validated experimental trends, predicting a diminishing band gap with a rising dopant concentration. The transition in Cr oxidation states was attributed to the presence of divalent/trivalent cations. These findings contribute some insights into methods to tune the LaCrO 3 electrical properties for various low- and high-temperature applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Electron density analysis of the effects of sugars on the structure of lipid bilayers at low hydration - a preliminary study

Small angle X-ray scattering is used to study the effects of sugars on membranes during dehydration. Previous work has shown that the bilayer and chain-chain repeat spacings of DPPC bilayers are relatively unaffected by the presence of sugars. In this work we present a preliminary analysis of the electron density profiles of DPPC in the presence of sugars at low hydration. The difficulties of determining the correct phasing are discussed. Sugars and other small solutes have been shown to have an important role in improving the tolerance of a range of species to desiccation and freezing. In particular it has been shown that sugars can stabilize membranes in the fluid membrane phase during dehydration, and in the fully dehydrated state. Equivalently, at a particular hydration, the presence of sugars lowers the transition temperature between the fluid and gel phases. There are two competing models for explaining the effects of sugars on membrane phase transition temperatures. One, designated the water replacement hypothesis (WRH) states that sugars hydrogen bond to phospholipid headgroups, thus hindering the fluid-gel phase transition. One version of this model suggests that certain sugars (such as trehalose) achieve the measured effects by inserting between the phospholipid head groups. An alternative model explains the observed effects of sugars in terms of the sugars effect on the hydration repulsion that develops between opposing membranes during dehydration. The hydration repulsion leads to a lateral compressive stress in the bilayer which squeezes adjacent lipids more closely together, resulting in a transition to the gel phase. When sugars are present, their osmotic and volumetric effects reduce the hydration repulsion, reduce the compressive stress in the membranes, and therefore tend to maintain the average lateral separation between lipids. This model is called the hydration forces explanation (HFE). We recently showed that neither mono- nor di-saccharides affect the average distance between lipid chains in the bilayer, supporting the predictions of the HFE. In this paper we further investigate the effects of sugars on membrane structure by conducting electron density analysis of recent data. This preliminary analysis sheds additional light onto the effects of sugars on membrane structure.

08 HYDROGEN↗

Investigation of iodine dopant amount effects on dye-sensitized hierarchically structured ZnO solar cells

Highlights: • The effect of I amount on the photovoltaic performance was investigated. • The enhancement in η of ZnO:I DSSCs was from 38% to 77% compared with ZnO DSSCs. • Appropriate I doping enhanced light harness and inhibited charge recombination. - Abstract: We prepare a series of iodine doped zinc oxide monodisperse aggregates (ZnO:I) with various iodine concentrations as the photoanodes of dye-sensitized solar cells (DSSCs) to study iodine dopant amount-dependent photovoltaic performance. The iodine-doped DSSCs achieve overall conversion efficiency (η) of 3.6–4.6%. The enhancement in η of ZnO:I DSSCs is from 38% to 77% as compared to undoped ZnO DSSCs. The significantly enhanced η of DSSCs is found to be correlated with iodine dopant amount. The optimum iodine dopant amount is determined to be 2.3 wt% by X-ray photoelectron spectroscopy. Furthermore, the incident photon to current conversion efficiency and electrochemical impedance spectroscopy data reveal a systematic correlation between photovoltaic properties and the iodine dopant amount. The enhancement of open-circuit potential of ZnO:I cells is arising from negative shift of their flat-band potential, as demonstrated by Mott–Schottky measurement.

36 MATERIALS SCIENCE↗

Enhanced Formation of Solvent-Shared Ion Pairs in Aqueous Calcium Perchlorate Solution toward Saturated Concentration or Deep Supercooling Temperature and Its Effects on the Water Structure

As a candidate of Martian salts, calcium perchlorate [Ca(ClO 4 ) 2 ] has the potential to stabilize liquid water on the Martian surface because of its hygroscopicity and low freezing temperature when forming aqueous solution. These two properties of electrolytes in general have been suggested to result from the specific cation–anion–water interaction (ion pairing) that interrupts the structure of solvent water. To investigate how this concentration-dependent and temperature-dependent ion pairing process in aqueous Ca(ClO 4 ) 2 solution leads to its high hygroscopic property and the extreme low eutectic temperature, we have conducted two sets of experiments. First, the effects of concentration on aqueous calcium perchlorate from 3 to 7.86 m on ion pairing were investigated using Raman spectroscopy. Deconvolution of the Raman symmetric stretching band (ν 1 ) of ClO 4 – showed the enhanced formation of solvent-shared ion pairs upon increasing salt concentration at room temperature. We have confirmed that the low tendency of forming contact ion pairs in concentrated solution contributes to the high hygroscopicity of the salt. Second, the near eutectic samples were studied as a function of temperature by both combined differential scanning calorimetry–Raman spectroscopic experiments and in situ X-ray diffraction. The number of solvent-shared ion pairs was found to increase with decreasing temperature when cooled below the temperature of maximum density of the solution, driven by a change in water toward an ice-like structure in the supercooled regime. The massive presence of solvent-shared ion pairs in turn limits the development of the long-range order in the tetrahedral networks of water molecules, which is responsible for the extremely low eutectic point and deep supercooling effects observed in the Ca(ClO 4 ) 2 –H 2 O system.

54 ENVIRONMENTAL SCIENCES↗

THE EFFECT OF DENSITY ON THE THERMAL STRUCTURE OF GRAVITATIONALLY DARKENED Be STAR DISKS

The effects of gravitational darkening on the thermal structure of Be star disks of differing densities are systematically examined. Gravitational darkening is the decrease of the effective temperature near the equator and the corresponding increase near the poles of a star caused by rapid rotation. We also include the rotational distortion of the star using the Roche model. Increasing the disk density increases the optical depths in the equatorial plane, resulting in the formation of an inner cool region near the equatorial plane of the disk. High rotation rates result in disks that have temperatures similar to those of a denser disk, namely cooler overall. However, the effect of increasing rotation produces additional heating in the upper disk due to the hotter stellar pole. Cool regions in the equatorial plane normally associated with high density are seen in low-density models at high rotation rates. Gravitational darkening increases the amount of very cool and very hot material in the disk and decreases the amount of disk material at moderate temperatures. We also present models that study the effect of gravitational darkening on hydrostatically converged disks, in which the temperature structure is consistent with vertical hydrostatic equilibrium. Because the equatorial regions become cooler, hydrostatically converged models that include gravity darkening have smaller vertical scale heights, and H/R is smaller by as much as 56% near v{sub crit}. Finally, we explore differences in disk temperatures when alternate formulations of gravitational darkening, which lower the temperature difference between the pole and the equator, are used.

79 ASTRONOMY AND ASTROPHYSICS↗

Effect of Thermodenuding on the Structure of Nascent Flame Soot Aggregates

The optical properties (absorption and scattering) of soot particles depend on soot size and index of refraction, but also on the soot complex morphology and the internal mixing with materials that can condense on a freshly emitted (nascent) soot particle and coat it. This coating can affect the soot optical properties by refracting light, or by changing the soot aggregate structure. A common approach to studying the effect of coating on soot optical properties is to measure the absorption and scattering coefficients in ambient air, and then measure them again after removing the coating using a thermodenuder. In this approach, it is assumed that: (1) most of the coating material is removed; (2) charred organic coating does not add to the refractory carbon; (3) oxidation of soot is negligible; and, (4) the structure of the pre-existing soot core is left unaltered, despite the potential oxidation of the core at elevated temperatures. In this study, we investigated the validity of the last assumption, by studying the effect of thermodenuding on the morphology of nascent soot. To this end, we analyzed the morphological properties of laboratory generated nascent soot, before and after thermodenuding. Our investigation shows that there is only minor restructuring of nascent soot by thermodenuding

54 ENVIRONMENTAL SCIENCES↗

Deep inelastic scattering from A = 3 nuclei: Nucleon structure and the EMC effect

The MARATHON experiment ran at Jefferson Laboratory in 2018, measuring deep inelastic scattering of 10.6 GeV electrons from the proton (p), deuterium (D), tritium ( 3 H), and helium-3 ( 3 He). MARATHON's experimental observables are cross section ratios, most notably 3 H/ 3 He. This ratio of mirror nuclei is used for a novel extraction of the nucleon structure function ratio $F^n_2$ /$F^p_2$ with minimal nuclear corrections. Determining leading-order $F^n_2$ /$F^p_2$ at high x provides important constrains on the ratio of nucleon valence quark distributions d/u. The ratios 3 H/D and 3 He/D allow a determination of the EMC effect in the lightest nuclei sensitive to possible isospin dependence of nuclear effects. Lastly, the D/p ratio allows a comparison of the MARATHON experiment to SLAC measurements, and provides data to which the A = 3 ratios can be renormalized. The MARATHON results provide new constraints on d/u. Additionally, the results emphasize the importance of higher-order effects in extracting $F^n_2$ /$F^p_2$ from DIS measurements, and can help constrain said effects. In the renormalization scheme applied in the MARATHON analysis, no significant isospin dependence of the EMC effect is observed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Effect of reaction atmosphere on structural and optical properties of hexagonal molybdenum oxide (h-MoO{sub 3})

The present work aims to synthesize single phase h-MoO{sub 3} nanocrytals by chemical precipitation method exposed under different reaction atmospheres. The reaction atmosphere have been successfully tuned as air, nitrogen and argon and studied its effects on structural, functional, morphology and optical properties by using X-ray diffraction (XRD), scanning electron microscopy (SEM), Fourier transform infrared (FT-IR) spectroscopy and diffuse reflectance spectroscopy (DRS) measurements. The XRD result indicates that the sample exhibits characteristic hexagonal phase of MoO{sub 3}. The crystallite size is estimated by well known Scherrer’s method. The crystallite size is relative small in the case of sample prepared at argon atmosphere. The functional groups such as Mo-O, N-H and O-H are identified from FT-IR spectroscopy. The particle exhibits rod like morphology with perfect hexagonal cross-section. The optical absorption observed at 420-450 nm corresponds to fundamental optical absorption by h-MoO{sub 3}. The band gap values are estimated using Kublka-Munk (K-M) function and found to be 2. 87 eV, 2.93 eV and 2.97 eV for samples synthesized under air, nitrogen and argon, respectively.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗