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At least 865 records · Page 48

Leaf structural and chemical traits, and BNL field campaign sample details, San Lorenzo, Panama, 2020

This data package includes leaf traits, canopy traits and sample details for leaves from 71 species sampled from the San Lorenzo forest canopy crane site, Panama (PA-SLZ) during the BNL field campaign in January to March 2020. Each leaf sample is described with species, phenological stage and location within vertical canopy profiles. Leaf area index (LAI) and height is presented for each canopy profile location. Leaf mass per area (LMA), leaf water content (LWC) and leaf carbon and nitrogen content are included for a subset of the samples. This data package includes sample details, processed data for leaf traits and LAI (*.csv), LAI raw data (compressed as *.zip) and digital camera images (*.jpg, compressed as *.zip) of the leaf samples. Metadata files include data descriptions (_dd.csv) for tabular data, a list of all species sampled during the campaign (*.csv) and a detailed description of the field campaign protocol and methods (*.pdf). See related datasets for leaf gas exchange, leaf water potential and leaf spectral measurements made on the samples described here.

54 ENVIRONMENTAL SCIENCES↗

Dynamic subcanopy leaf traits drive resistance of net primary production across a disturbance severity gradient

Across the globe, the forest carbon sink is increasingly vulnerable to an expanding array of low- to moderate-severity disturbances. However, some forest ecosystems exhibit functional resistance (i.e., the capacity of ecosystems to continue functioning as usual) following disturbances such as extreme weather events and insect or fungal pathogen outbreaks. Unlike severe disturbances (e.g., stand-replacing wildfires), moderate severity disturbances do not always result in near-term declines in forest production because of the potential for compensatory growth, including enhanced subcanopy production. Community-wide shifts in subcanopy plant functional traits, prompted by disturbance-driven environmental change, may play a key mechanistic role in resisting declines in net primary production (NPP) up to thresholds of canopy loss. However, the temporal dynamics of these shifts, as well as the upper limits of disturbance for which subcanopy production can compensate, remain poorly characterized. In this study, we leverage a 4-year dataset from an experimental forest disturbance in northern Michigan to assess subcanopy community trait shifts as well as their utility in predicting ecosystem NPP resistance across a wide range of implemented disturbance severities. Through mechanical girdling of stems, we achieved a gradient of severity from 0% (i.e., control) to 45, 65, and 85% targeted gross canopy defoliation, replicated across four landscape ecosystems broadly representative of the Upper Great Lakes ecoregion. We found that three of four examined subcanopy community weighted mean (CWM) traits including leaf photosynthetic rate (p = 0.04), stomatal conductance (p = 0.07), and the red edge normalized difference vegetation index (p < 0.0001) shifted rapidly following disturbance but before widespread changes in subcanopy light environment triggered by canopy tree mortality. Surprisingly, stimulated subcanopy production fully compensated for upper canopy losses across our gradient of experimental severities, achieving complete resistance (i.e., no significant interannual differences from control) of whole ecosystem NPP even in the 85% disturbance treatment. Additionally, we identified a probable mechanistic switch from nutrient-driven to light-driven trait shifts as disturbance progressed. Our findings suggest that remotely sensed traits such as the red edge normalized difference vegetation index (reNDVI) could be particularly sensitive and robust predictors of production response to disturbance, even across compositionally diverse forests. The potential of leaf spectral indices to predict post-disturbance functional resistance is promising given the capabilities of airborne to satellite remote sensing. We conclude that dynamic functional trait shifts following disturbance can be used to predict production response across a wide range of disturbance severities.

resistance↗

Assessing Forest Level Response to the Death of a Dominant Tree within a Premontane Tropical Rainforest

Small-scale treefall gaps are among the most important forms of forest disturbance in tropical forests. These gaps expose surrounding trees to more light, promoting rapid growth of understory plants. However, the effects of such small-scale disturbances on the distribution of plant water use across tree canopy levels are less known. To address this, we explored plant transpiration response to the death of a large emergent tree, Mortoniodendron anisophyllum Standl. & Steyerm (DBH > 220 cm; height ~40 m). Three suppressed, four mid-story, and two subdominant trees were selected within a 50 × 44 m premontane tropical forest plot at the Texas A&M Soltis Center for Research and Education located in Costa Rica. We compared water use rates of the selected trees before (2015) and after (2019) the tree gap using thermal dissipation sap flow sensors. Hemispherical photography indicated a 40% increase in gap fraction as a result of changes in canopy structure after the treefall gap. Micrometeorological differences (e.g., air temperature, relative humidity, and vapor pressure deficit (VPD)) could not explain the observed trends. Rather, light penetration, as measured by sensors within the canopy, increased significantly in 2019. One year after the tree fell, the water usage of trees across all canopy levels increased modestly (15%). Moreover, average water usage by understory trees increased by 36%, possibly as a result of the treefall gap, exceeding even that of overstory trees. These observations suggest the possible reallocation of water use between overstory and understory trees in response to the emergent tree death. With increasing global temperatures and shifting rainfall patterns increasing the likelihood of tree mortality in tropical forests, there is a greater need to enhance our understanding of treefall disturbances that have the potential to redistribute resources within forests.

54 ENVIRONMENTAL SCIENCES↗

3D reconstruction identifies loci linked to variation in angle of individual sorghum leaves

Selection for yield at high planting density has reshaped the leaf canopy of maize, improving photosynthetic productivity in high density settings. Further optimization of canopy architecture may be possible. However, measuring leaf angles, the widely studied component trait of leaf canopy architecture, by hand is a labor and time intensive process. Here, we use multiple, calibrated, 2D images to reconstruct the 3D geometry of individual sorghum plants using a voxel carving based algorithm. Automatic skeletonization and segmentation of these 3D geometries enable quantification of the angle of each leaf for each plant. The resulting measurements are both heritable and correlated with manually collected leaf angles. This automated and scaleable reconstruction approach was employed to measure leaf-by-leaf angles for a population of 366 sorghum plants at multiple time points, resulting in 971 successful reconstructions and 3,376 leaf angle measurements from individual leaves. A genome wide association study conducted using aggregated leaf angle data identified a known large effect leaf angle gene, several previously identified leaf angle QTL from a sorghum NAM population, and novel signals. Genome wide association studies conducted separately for three individual sorghum leaves identified a number of the same signals, a previously unreported signal shared across multiple leaves, and signals near the sorghum orthologs of two maize genes known to influence leaf angle. Automated measurement of individual leaves and mapping variants associated with leaf angle reduce the barriers to engineering ideal canopy architectures in sorghum and other grain crops.

3D reconstruction↗

Signature extension for sun angle, volume 1

The author has identified the following significant results. Within a restricted zenith sun angle range of 35 - 50 degrees, it was empirically observed that canopy reflectance is mainly Lambertian. Reflectance changes with crop stage were simple shifts in scale in the sun angle range. It was noted that sun angle variations depend on canopy characteristics. Effects of the vegetative canopy were most pronounced at the larger solar zenith angles (20 %). The linear sun angle correction coefficients demonstrate a dependency on both crop stage (15-20 %) and crop type (10-20 %). The use of canopy reflectance modeling allowed for the generation of a simulated data set over an extremely broad envelope of sun angles.

Smith, J. A.↗

Crop water-stress assessment using an airborne thermal scanner

An airborne thermal scanner was used to measure the temperature of a wheat crop canopy in Phoenix, Arizona. The results indicate that canopy temperatures acquired about an hour and a half past solar noon were well correlated with presunrise plant water tension, a parameter directly related to plant growth and development. Pseudo-colored thermal images reading directly in stress degree days, a unit indicative of crop irrigation needs and yield potential, were produced. The aircraft data showed significant within-field canopy temperature variability, indicating the superiority of the synoptic view provided by aircraft over localized ground measurements. The standard deviation between airborne and ground-acquired canopy temperatures was 2 C or less.

Millard, J. P.↗

Vegetation reflectance measurements as a function of solar zenith angle

An understanding of the behavior of vegetation canopy reflectance as a function of solar zenith angle is important to several remote sensing applications. Spectral hemispherical-conical reflectances of a nadir looking sensor were taken throughout the day of a lodgepole pine and two grass canopies. Mathematical simulations of both a spectral hemispherical-conical reflectance factor and a spectral bi-hemispherical reflectance were performed for two theoretical canopies of contrasting geometric structure. These results and results from literature studies showed a great amount of variability of vegetation canopy reflectances as a function of solar zenith angle. Explanations for this variability are discussed and recommendations for future measurements are proposed.

Kimes, D. S.↗

Simulated directional radiances of vegetation from satellite platforms

A computer modeling and simulation investigated the effects of off-nadir viewing, canopy geometry and density, solar zenith angle, and atmospheric conditions on the radiance of several vegetated targets. Effects on the normalized difference (ND) index were also investigated, and two wavelengths of 0.68 and 0.80 micron were simulated at nine sensor zenith angles, five sensor azimuths, and nine solar zenith angles. Seven canopies of low, medium, and high densities were observed, and bidirectional reflectance functions of other canopies were discussed. A modified Turner's (1974) atmospheric radiative transfer model was used for 2300 simulation runs. Off-nadir viewing effects were more pronounced in the red than the infrared, and the variability was found to be a function of canopy geometry. The ND index eliminated much of the variability seen in the individual bands, while the overall variability decreased with increasing biomass, and increased with increasing solar zenith angles.

Kirchner, J. A.↗

Diurnal changes in reflectance factor due to Sun-row direction interactions

Over a two year period, data were collected regarding the canopies of soybeans grown in rows in planter boxes placed on a turntable in an effort to investigate changes in the spectral reflectance factor related to row direction, Sun direction, soil background, and crop development stage. Results demonstrate that the direction of rows in a soybean canopy can affect the reflectance factor of the canopy by as much as 230%. The results for the red spectral region tend to support the validity of canopy reflectance models; results for the infrared region do not.

Bauer, M. E.↗

The effects of vegetation cover on the radar and radiometric sensitivity to soil moisture

The measured effects of vegetation canopies on radar and radiometric sensitivity to soil moisture are compared to emission and scattering models. The models are found to predict accurately the measured emission and backscattering for various crop canopies at frequencies between 1.4 and 5.0 GHz, especially at theta equal to or less than 30 deg. Vegetation loss factors, L(theta), increase with frequency and are found to be dependent upon canopy type and water content. In addition, the radiometric power absorption coefficient of a mature corn canopy is 1.75 times that calculated for the radar. Comparison of an L-band radiometer with a C-band radar shows the two systems to be complementary in terms of accurate soil moisture sensing over the extreme range of naturally occurring soil moisture conditions.

Ulaby, F. T.↗

Remote sensing of agricultural crops and soils

Research in the correlative and noncorrelative approaches to image registration and the spectral estimation of corn canopy phytomass and water content is reported. Scene radiation research results discussed include: corn and soybean LANDSAT MSS classification performance as a function of scene characteristics; estimating crop development stages from MSS data; the interception of photosynthetically active radiation in corn and soybean canopies; costs of measuring leaf area index of corn; LANDSAT spectral inputs to crop models including the use of the greenness index to assess crop stress and the evaluation of MSS data for estimating corn and soybean development stages; field research experiment design data acquisition and preprocessing; and Sun-view angles studies of corn and soybean canopies in support of vegetation canopy reflection modeling.

Bauer, M. E.↗

Reflectance Modeling

A classical description of the one dimensional radiative transfer treatment of vegetation canopies was completed and the results were tested against measured prairie (blue grama) and agricultural canopies (soybean). Phase functions are calculated in terms of directly measurable biophysical characteristics of the canopy medium. While the phase functions tend to exhibit backscattering anisotropy, their exact behavior is somewhat more complex and wavelength dependent. A Monte Carlo model was developed that treats soil surfaces with large periodic variations in three dimensions. A photon-ray tracing technology is used. Currently, the rough soil surface is described by analytic functions and appropriate geometric calculations performed. A bidirectional reflectance distribution function is calculated and, hence, available for other atmospheric or canopy reflectance models as a lower boundary condition. This technique is used together with an adding model to calculate several cases where Lambertian leaves possessing anisotropic leaf angle distributions yield non-Lambertian reflectance; similar behavior is exhibited for simulated soil surfaces.

Smith, J. A.↗

Measuring and Modeling of the Dielectric Properties and Attenuation of Vegetation

The dielectric properties of vegetation material--primarily agricultural plants--as a function of moisture content and microwave frequency was measured and used to develop dielectric mixing models for the vegetation-water mixture. A model for the loss factor of a vegetation canopy was also developed. During the first phase of this investigation, three waveguide transmission systems covering from 1 to 2-GHz, from 3.5 to 6.5-GHz, and from 7.5 to 8.5-GHz bands were constructed and calibrated. By measuring the magnitude and phase of the field transmission coefficient of a given sample, it was possible to calculate the real and imaginary parts of the complex dielectric constant of the sample. Measurements were made for numerous samples of leaves and stalks of wheat and corn, and for wheat heads. Also, dielectric measurements were made of the liquid included in the vegetation material after extraction by mechanical means. The propagation loss is more than an order of magnitude greater than had previously been assumed. Various types of dielectric mixing models were investigated in terms of the available data, and a propagation model was developed and evaluated against direct canopy attenuation measurements. The canopy measurements were made by transmitting a signal from a radar antenna mounted atop a truck-mounted boom, and using a small antenna mounted on a rail beneath the canopy to receive it.

Ulaby, F. T.↗

Evaluation of spatial, radiometric and spectral Thematic Mapper performance for coastal studies

The effect different wetland plant canopies have upon observed reflectance in Thematic Mapper bands is studied. The three major vegetation canopy types (broadleaf, gramineous and leafless) produce unique spectral responses for a similar quantity of live biomass. The spectral biomass estimate of a broadleaf canopy is most similar to the harvest biomass estimate when a broadleaf canopy radiance model is used. All major wetland vegetation species can be identified through TM imagery. Simple regression models are developed equating the vegetation index and the infrared index with biomass. The spectral radiance index largely agreed with harvest biomass estimates.

Klemas, V.↗

Aboveground Biomass Estimation in a Tidal Brackish Marsh Using Simulated Thematic Mapper Spectral Data

Spectral radiance data were collected from the ground and from a low altitude aircraft in an attempt to gain some insight into the potential utility of actual Thematic Mapper data for biomass estimation in wetland plant communities. No attempt was made to distinguish individual plant species within brackish marsh plant associations. Rather, it was decided to lump plant species with similar canopy morphologies and then estimate from spectral radiance data the biomass of the group. The rationale for such an approach is that plants with a similar morphology will produce a similar reflecting or absorping surface (i.e., canopy) for incoming electromagnetic radiation. Variations in observed reflectance from different plant communities with a similar canopy morphology are more likely to be a result of biomass differences than a result of differences in canopy architecture. If the hypothesis that plants with a similar morphology exhibit similar reflectance characteristics is true, then biomass can be estimated based on a model for the dominant plant morphology within a plant association and the need for species discrimination has effectively been eliminated.

Hardisky, M.↗

Effects of corn stalk orientation and water content on passive microwave sensing of soil moisture

A field experiment was conducted utilizing artificial arrangements of plant components during the summer of 1982 to examine the effects of corn canopy structure and plant water content on microwave emission. Truck-mounted microwave radiometers at C (5 GHz) and L (1.4 GHz) band sensed vertically and horizontally polarized radiation concurrent with ground observations of soil moisture and vegetation parameters. Results indicate that the orientation of cut stalks and the distribution of their dielectric properties through the canopy layer can influence the microwave emission measured from a vegetation/soil scene. The magnitude of this effect varies with polarization and frequency and with the amount of water in the plant, disappearing at low levels of vegetation water content. Although many of the canopy structures and orientations studied in this experiment are somewhat artificial, they serve to improve understanding of microwave energy interactions within a vegetation canopy and to aid in the development of appropriate physically based vegetation models.

Oneill, P. E.↗

Coupled atmosphere/canopy model for remote sensing of plant reflectance features

Solar radiative transfer through a coupled system of atmosphere and plant canopy is modeled as a multiple-scattering problem through a layered medium of random scatterers. The radiative transfer equation is solved by the discrete-ordinates finite-element method. Analytic expressions are derived that allow the calculation of scattering and absorption cross sections for any plant canopy layer form measurable biophysical parameters such as the leaf area index, leaf angle distribution, and individual leaf reflectance and transmittance data. An expression for a canopy scattering phase function is also given. Computational results are in good agreement with spectral reflectance measurements directly above a soybean canopy, and the concept of greenness- and brightness-transforms of Landsat MSS data is reconfirmed with the computed results. A sensitivity analysis with the coupled atmosphere/canopy model quantifies how satellite-sensed spectral radiances are affected by increased atmospheric aerosols, by varying leaf area index, by anisotropic leaf scattering, and by non-Lambertian soil boundary conditions. Possible extensions to a 2-D model are also discussed.

Gerstl, S. A.↗

Atmospheric and Science Complexity Effects on Surface Bidirectional Reflectance

Among the tools used in passive remote sensing of Earth resources in the visible and near-infrared spectral regions are measurements of spectral signature and bidirectional reflectance functions (BDRFs). Determination of surface properties using these observables is complicated by a number of factors, including: (1) mixing of surface components, such as soil and vegetation, (2) multiple reflections of radiation due to complex geometry, such as in crop canopies, and (3) atmospheric effects. In order to bridge the diversity in these different approaches, there is a need for a fundamental physical understanding of the influence of the various effects and a quantiative measure of their relative importance. In particular, we consider scene complexity effects using the example of reflection by vegetative surfaces. The interaction of sunlight with a crop canopy and interpretation of the spectral and angular dependence of the emergent radiation is basically a multidimensional radiative transfer problem. The complex canopy geometry, underlying soil cover, and presence of diffuse as well as collimated illumination will modify the reflectance characteristics of the canopy relative to those of the individual elements.

Diner, D. J.↗