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At least 883 records · Page 49

Evaluating Retention Index Score Assumptions to Refine GC–MS Metabolite Identification

As metabolomics grows into a high-throughput and high demand research field, current metrics for the identification of small molecules in gas chromatography–mass spectrometry (GC–MS) still require manual verification. Though steps have been taken to improve scoring metrics by combining spectral similarity (SS) and retention index (RI), the problem persists. A large body of literature has analyzed and refined SS scores, but few studies have explicitly studied improvements to RI scores. Here, in this study, we examined whether uninvestigated assumptions of the RI score are valid and propose ways to improve them. Query RIs were matched to library RI with a generous window of ±35 to avoid unintentional removal of valid compound identifications. Each match was manually verified as a true positive (TP), true negative, or unknown. Metabolites with at least 30 TP identifications were included in downstream analyses, resulting in a total of 87 metabolites from samples of varying complexity and type (e.g., amino acid mixtures, human urine, fungal species, and so on.). Our results showed that the RI score assumptions of normality, consistent variance across metabolites, and a mean error centered at 0 are often violated. We demonstrated through a cross-validation analysis that modifying these underlying assumptions according to empirical metabolite-specific distributions improved the TP and negative rankings. Further, we statistically determined the minimum number of samples required to estimate distributional parameters for scoring metrics. Overall, this work proposes a robust statistical pipeline to reduce the time bottleneck of metabolite identification by improving RI scores and thus minimize the effort to complete manual verification.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A new method for simulating atmospheric turbulence for rotorcraft applications

Simulation of atmospheric turbulence as seen by a rotating blade element involves treatment of cyclostationary processes. Conventional filtering techniques do not lend themselves well to the generation of such turbulence sample functions as are required in rotorcraft flight dynamics simulation codes. A method to generate sample functions containing second-order statistics of mean and covariance is presented. Compared to ensemble averaging involving excessive computer time, the novelty is to exploit cycloergodicity and thereby, replace ensemble averaging by averaging over a single-path sample function of long duration. The method is validated by comparing its covariance results with the analytical and ensemble-averaged results for a widely used one-dimensional turbulence approximation.

Prasad, J. V. R.↗

A novel framework for increasing research transparency: Exploring the connection between diversity and innovation

A split sample/dual method research protocol is demonstrated to increase transparency while reducing the probability of false discovery. We apply the protocol to examine whether diversity in ownership teams increases or decreases the likelihood of a firm reporting a novel innovation using data from the 2018 United States Census Bureau’s Annual Business Survey. Transparency is increased in three ways: 1) all specification testing and identifying potentially productive models is done in an exploratory subsample that 2) preserves the validity of hypothesis test statistics fromde novoestimation in the holdout confirmatory sample with 3) all findings publicly documented in an earlier registered report and in this journal publication. Bayesian estimation procedures that leverage information from the exploratory stage included in the confirmatory stage estimation replace traditional frequentist null hypothesis significance testing. In addition to increasing statistical power by using information from the full sample, Bayesian methods directly estimate a probability distribution for the magnitude of an effect, allowing much richer inference. Estimated magnitudes of diversity along academic discipline, race, ethnicity, and foreign-born status dimensions are positively associated with innovation. A maximally diverse ownership team on these dimensions would be roughly six times more likely to report new-to-market innovation than a homophilic team.

Science & Technology - Other Topics↗

Galaxy interactions and strength of nuclear activity

Analysis of data in the literature for differential velocities and projected separations of nearby Seyfert galaxies with possible companions shows a clear difference in projected separations between type 1's and type 2's. This kinematic difference between the two activity classes reinforces other independent evidence that their different nuclear characteristics are related to a non-nuclear physical distinction between the two classes. The differential velocities and projected separations of the galaxy pairs in this sample yield mean galaxy masses, sizes, and mass to light ratios which are consistent with those found by the statistical methods of Karachentsev. Although the galaxy sample discussed here is too small and too poorly defined to provide robust support for these conclusions, the results strongly suggest that nuclear activity in Seyfert galaxies is associated with gravitational perturbations from companion galaxies, and that there are physical distinctions between the host companions of Seyfert 1 and Seyfert 2 nuclei which may depend both on the environment and the structure of the host galaxy itself.

Simkin, S. M.↗

K‐band luminosity–environment relation in three different galaxy samples of the Sloan Digital Sky Survey III

The aim of this work is to examine the environmental dependence of K‐band luminosity in the Main, Low Redshift (LOWZ), and Constant Mass (CMASS) galaxy samples of the Sloan Digital Sky Survey Data Release 10 (SDSS DR10). Overall, the environmental dependence of K‐band luminosity is very mild. In two volume‐limited Main samples with the luminosity −20.5 ≤ M r ≤ −18.5 and −22.5 ≤ M r ≤ −20.5, respectively, we find that the environmental dependence of K‐band luminosity in the luminous volume‐limited Main galaxy sample still can be observed, but this dependence in the faint volume‐limited Main galaxy sample is very weak. Considering the disadvantages of the use of volume‐limited samples, we apply the apparent magnitude‐limited Main galaxy sample, divide the Main galaxy sample of the SDSS DR10 into subsamples with a redshift binning size of Δ z =0.01, and then analyze the environmental dependence of K‐band luminosity of subsamples in each redshift bin. Such a method also is used in the LOWZ and CMASS galaxy samples. K‐band luminosity of the Main galaxies shows substantial correlation with the local environment in many redshift bins. In the LOWZ galaxy sample, K‐band luminosity of galaxies shows substantial correlation with the local environment only in the redshift region 0.16 ≤ z ≤ 0.21, while K‐band luminosity of CMASS galaxy sample is only weakly correlated with the local environment. Statistical results also show that in the apparent magnitude‐limited main galaxy sample and the LOWZ galaxy sample, environmental dependence of K‐band luminosity becomes weak with increasing redshift.

Deng, X. ‐F.↗

A generalized approximate control variate framework for multifidelity uncertainty quantification

We describe and analyze a variance reduction approach for Monte Carlo (MC) sampling that accelerates the estimation of statistics of computationally expensive simulation models using an ensemble of models with lower cost. These lower cost models — which are typically lower fidelity with unknown statistics — are used to reduce the variance in statistical estimators relative to a MC estimator with equivalent cost. We derive the conditions under which our proposed approximate control variate framework recovers existing multifidelity variance reduction schemes as special cases. We demonstrate that existing recursive/nested strategies are suboptimal because they use the additional low-fidelity models only to efficiently estimate the unknown mean of the first low-fidelity model. As a result, they cannot achieve variance reduction beyond that of a control variate estimator that uses a single low-fidelity model with known mean. However, there often exists about an order-of-magnitude gap between the maximum achievable variance reduction using all low-fidelity models and that achieved by a single low-fidelity model with known mean. We show that our proposed approach can exploit this gap to achieve greater variance reduction by using non-recursive sampling schemes. The proposed strategy reduces the total cost of accurately estimating statistics, especially in cases where only low-fidelity simulation models are accessible for additional evaluations. Several analytic examples and an example with a hyperbolic PDE describing elastic wave propagation in heterogeneous media are used to illustrate the main features of the methodology.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Freshwater ice thickness observations using passive microwave sensors

Walden Reservoir, a freshwater lake in north-central Colorado, was overflown six times by a NASA C-130 aircraft between January 1977 and April 1980. The aircraft was equipped with four microwave radiometers operating between 0.81 and 6.0 cm in wavelength (37.0 to 5.0 GHz). The 6.0-cm radiometer data showed a good relationship with ice thickness based on a sample of four ice thickness values. The 1.67- and 1.35-cm radiometer data showed weaker relationships with ice thickness. The 0.81-cm sensor data showed no positive relationship with ice thickness. None of the relationships was statistically significant because of the small sample size. The 6.0-cm sensor data in the nadir-viewing mode was found to have the most potential of all the wavelengths studied, for use in remotely determining ice thickness. The 6.0-cm radiometer probably sensed the entire thickness of the ice on the reservoir (ranging from 25.4 to 67.3 cm in thickness) and was apparently not significantly affected by the snow overlying the ice. The shorter wavelengths are scattered by the snow overlying the ice and are more suitable for snow studies than for ice thickness studies.

Hall, D. K.↗

The DESI DR1 Peculiar Velocity Survey: Mock Catalog

We describe the production of the official set of mock catalogs for the Dark Energy Spectroscopic Instrument Peculiar Velocity Survey (DESI-PV) Data Release 1 (DR1). Our mock catalogs reproduce the Bright Galaxy Survey number density and clustering at low redshift $(z<0.1)$ and the DESI PV samples of Fundamental plane and Tully-Fisher distances, from which we derive peculiar velocities. We carefully match mock and data properties and we mimic measurements of distance indicators and peculiar velocities, which follow the same statistical properties as real data. Mock samples of type-Ia supernovae also complement the other two distance indicators. Our 675 available mock realizations were used consistently by our three different methodologies described in our companion papers that measure the growth rate of structure $fσ_8$ with DESI PV DR1. Those mocks allow us to perform precise tests of clustering models and uncertainty estimation to an unprecedented level of accuracy, and compute correlations between methodologies. The consensus value for the DESI DR1 PV growth rate measurement is $fσ_8 = 0.450 \pm 0.055$. This sample of mock catalogs represents the largest and most realistic set for cosmological measurements with peculiar velocities to date.

Bautista, J. [Marseille, CPPM]↗

Labeling sequential data from noisy annotations

Crowdsourcing algorithms often work under the assumption that the data samples are independent. Recent work has shown that data dependence, such as temporal correlations in sequential data, can be leveraged to improve the label quality. Existing methods that exploit this special structure rely on third-order statistics of the annotator outputs to ensure the identifiability of key latent parameters, which are costly to acquire. This work proposes an approach for integrating crowdsourced annotations under the Dawid-Skene/Hidden Markov Model (DS-HMM) for sequential data based on second-order statistics, which naturally enjoys a lower sample complexity. An effective algorithm is proposed to tackle the challenging optimization problem associated with the proposed estimator. Numerical experiments showcase the effectiveness of the data labeling paradigm.

Marrinan, Timothy P.↗

A Non-Intrusive Algorithm for Sensitivity Analysis of Chaotic Flow Simulations

We demonstrate a novel algorithm for computing the sensitivity of statistics in chaotic flow simulations to parameter perturbations. The algorithm is non-intrusive but requires exposing an interface. Based on the principle of shadowing in dynamical systems, this algorithm is designed to reduce the effect of the sampling error in computing sensitivity of statistics in chaotic simulations. We compare the effectiveness of this method to that of the conventional finite difference method.

Blonigan, Patrick J.↗

Modeling the Stochastic Response of Fiber Reinforced Composites with Varied Representative Volume Element Sizes

Fiber reinforced composites are desirable in applications where low weight and high strength are needed, but are susceptible to variability and flaws during manufacturing, making failure predictions difficult. These flaws may occur at the microscale where mechanical properties vary locally due to regions of fiber clusters and matrix pockets. In this study, a multiscale approach was taken to model 3-point bend, 4-point bend, and tensile experiments of a unidirectional composite from only having microstructure scans of these samples and constituent properties from literature. These scans were sampled with different sized windows, and statistically equivalent microstructures were generated, then simulated for stiffness, strength, and fracture toughness using a reduced order micromechanical model and NASA’s Multiscale Analysis Tool (NASMAT). Mesoscale models were created with equivalent element sizes to microstructures and properties sampled from microscale simulation results. Results showed how microscale size affects certain mechanical properties. Also shown is how well mesoscale models agree to experiments when using stochastic element properties and varying element size.

microstructure↗

Is the gamma-ray source 3FGL J2212.5+0703 a dark matter subhalo?

In a previous study, we pointed out that the gamma-ray source 3FGL J2212.5+0703 shows evidence of being spatially extended. If a gamma-ray source without detectable emission at other wavelengths were unambiguously determined to be spatially extended, it could not be explained by known astrophysics, and would constitute a smoking gun for dark matter particles annihilating in a nearby subhalo. With this prospect in mind, we scrutinize the gamma-ray emission from this source, finding that it prefers a spatially extended profile over that of a single point-like source with 5.1σ statistical significance. We also use a large sample of active galactic nuclei and other known gamma-rays sources as a control group, confirming, as expected, that statistically significant extension is rare among such objects. We argue that the most likely (non-dark matter) explanation for this apparent extension is a pair of bright gamma-ray sources that serendipitously lie very close to each other, and estimate that there is a chance probability of ~2% that such a pair would exist somewhere on the sky. In the case of 3FGL J2212.5+0703, we test an alternative model that includes a second gamma-ray point source at the position of the radio source BZQ J2212+0646, and find that the addition of this source alongside a point source at the position of 3FGL J2212.5+0703 yields a fit of comparable quality to that obtained for a single extended source. If 3FGL J2212.5+0703 is a dark matter subhalo, it would imply that dark matter particles have a mass of ~18–33 GeV and an annihilation cross section on the order of σv ~ 10 –26 cm(3)/s (for the representative case of annihilations to $b\bar{b}$), similar to the values required to generate the Galactic Center gamma-ray excess.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A NEW STATISTICAL PERSPECTIVE TO THE COSMIC VOID DISTRIBUTION

In this study, we obtain the size distribution of voids as a three-parameter redshift-independent log-normal void probability function (VPF) directly from the Cosmic Void Catalog (CVC). Although many statistical models of void distributions are based on the counts in randomly placed cells, the log-normal VPF that we obtain here is independent of the shape of the voids due to the parameter-free void finder of the CVC. We use three void populations drawn from the CVC generated by the Halo Occupation Distribution (HOD) Mocks, which are tuned to three mock SDSS samples to investigate the void distribution statistically and to investigate the effects of the environments on the size distribution. As a result, it is shown that void size distributions obtained from the HOD Mock samples are satisfied by the three-parameter log-normal distribution. In addition, we find that there may be a relation between the hierarchical formation, skewness, and kurtosis of the log-normal distribution for each catalog. We also show that the shape of the three-parameter distribution from the samples is strikingly similar to the galaxy log-normal mass distribution obtained from numerical studies. This similarity between void size and galaxy mass distributions may possibly indicate evidence of nonlinear mechanisms affecting both voids and galaxies, such as large-scale accretion and tidal effects. Considering the fact that in this study, all voids are generated by galaxy mocks and show hierarchical structures in different levels, it may be possible that the same nonlinear mechanisms of mass distribution affect the void size distribution.

79 ASTRONOMY AND ASTROPHYSICS↗

Hydrogeological Model Selection Among Complex Spatial Priors

Hydrogeological field studies rely often on a single conceptual representation of the subsurface. This is problematic since the impact of a poorly chosen conceptual model on predictions might be significantly larger than the one caused by parameter uncertainty. Furthermore, conceptual models often need to incorporate geological concepts and patterns in order to provide meaningful uncertainty quantification and predictions. Consequently, several geologically realistic conceptual models should ideally be considered and evaluated in terms of their relative merits. Here, we propose a full Bayesian methodology based on Markov chain Monte Carlo to enable model selection among 2-D conceptual models that are sampled using training images and concepts from multiple-point statistics. More precisely, power posteriors for the different conceptual subsurface models are sampled using sequential geostatistical resampling and Graph Cuts. To demonstrate the methodology, we compare and rank five alternative conceptual geological models that have been proposed in the literature to describe aquifer heterogeneity at the MAcroDispersion Experiment site in Mississippi, USA. We consider a small-scale tracer test for which the spatial distribution of hydraulic conductivity impacts multilevel solute concentration data observed along a 2-D transect. The thermodynamic integration and the stepping-stone sampling methods were used to compute the evidence and associated Bayes factors using the computed power posteriors. We find that both methods are compatible with multiple-point statistics-based inversions and provide a consistent ranking of the competing conceptual models considered.

58 GEOSCIENCES↗

BROAD Hβ EMISSION-LINE VARIABILITY IN A SAMPLE OF 102 LOCAL ACTIVE GALAXIES

A sample of 102 local (0.02 ≤ z ≤ 0.1) Seyfert galaxies with black hole masses M{sub BH} > 10{sup 7}M{sub ⊙} was selected from the Sloan Digital Sky Survey (SDSS) and observed using the Keck 10 m telescope to study the scaling relations between M{sub BH} and host galaxy properties. We study profile changes of the broad Hβ emission line within the three to nine year time frame between the two sets of spectra. The variability of the broad Hβ emission line is of particular interest, not only because it is used to estimate M{sub BH}, but also because its strength and width are used to classify Seyfert galaxies into different types. At least some form of broad-line variability (in either width or flux) is observed in the majority (∼66%) of the objects, resulting in a Seyfert-type change for ∼38% of the objects, likely driven by variable accretion and/or obscuration. The broad Hβ line virtually disappears in 3/102 (∼3%) extreme cases. We discuss potential causes for these changing look active galactic nuclei. While similar dramatic transitions have previously been reported in the literature, either on a case-by-case basis or in larger samples focusing on quasars at higher redshifts, our study provides statistical information on the frequency of Hβ line variability in a sample of low-redshift Seyfert galaxies.

79 ASTRONOMY AND ASTROPHYSICS↗

Post-Closure Environmental Sampling and Inspection at the Amchitka Island, Alaska, Site - 17251

In the 1960's and early 1970's, three underground nuclear tests were conducted on Amchitka Island, Alaska. In 1965, the US Department of Defense-in conjunction with the US Atomic Energy Commission (AEC)-conducted the first of these nuclear tests, Long Shot, to provide data that would improve US capabilities for detecting underground nuclear explosions. In 1969, AEC conducted the second test, Milrow, to explore the feasibility of detonating a much larger device. In 1971, AEC conducted the third test, Cannikin, which was the largest underground test ever conducted by the US. The Long-Term Surveillance Plan (LTSP) for the Amchitka, Alaska, Site details how the US Department of Energy Office of Legacy Management (LM) intends to fulfill its mission to protect human health and the environment at and around the Amchitka Island site. The LTSP calls for monitoring to be performed every 5 years, at least during the initial phase of the project. The purpose of the monitoring is to develop a baseline of activity concentrations for selected radionuclides in biota, water, and soil, both on Amchitka Island and at the reference location on Adak Island, approximately 322 kilometers (200 miles) northeast of Amchitka. In addition to the environmental monitoring activities, seven mud pit caps that contain diesel-contaminated soils are inspected. The plan for biological and water sampling (both seawater and freshwater) during the May 2016 sampling event was developed through close coordination with the primary stakeholders, including the Alaska Department of Environmental Conservation, the Aleutian Pribilof Islands Association, and the US Fish and Wildlife Service. The environmental sampling in 2016 is a continuation of LM's evaluation of Amchitka Island's environment. Previous results from similar monitoring programs in 2004 and 2011 indicate that the environment is not being impacted by radionuclide migration and uptake from the underground nuclear testing conducted beneath Amchitka Island; consequently, subsistence and commercial-catch seafood is safe for human consumption. The collection of biota samples (rockfish, Irish lords, greenling, and rockweed) for cesium-134 ({sup 134}Cs), cesium-137 ({sup 137}Cs), plutonium-239 ({sup 239}Pu), plutonium-240 ({sup 240}Pu), and freshwater and seawater samples for {sup 134}Cs, {sup 137}Cs, and tritium ({sup 3}H) was the primary objective of the 2016 sampling effort. Rockfish, Irish lords, and greenling are resident, nonmigratory fish species that spend their entire life cycle in the marine environment, and rockweed is an inter-tidal species that may concentrate cesium. The seawater samples were collected primarily to determine if leakage from the Long Shot detonation could be detected and, secondarily, to compare with the background seawater samples collected from Adak Island. Cesium isotopes are also being analyzed to better understand the potential impact that the Fukushima-Daiichi release might have on the Amchitka and Adak environments. The target detection limits used for the 2016 sampling are lower than those used in previous studies. The lower detection limits make it possible for LM to delineate background activity levels for the radionuclides of interest. Data from the 2016 sampling event go beyond assessing food safety and focus on detecting leakage from the underground nuclear explosions. Additionally, the baseline activity concentrations obtained for the reference area (Adak Island) will enable identification of quantitative statistical trends in the results of future sampling programs. Sampling programs conducted in 2021 and beyond will have an objective to assess the statistical trends of radioactivity levels in the Amchitka Island environment. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

H-ATLAS/GAMA: magnification bias tomography. Astrophysical constraints above ∼1 arcmin

An unambiguous manifestation of the magnification bias is the cross-correlation between two source samples with non-overlapping redshift distributions. In this work we measure and study the cross-correlation signal between a foreground sample of GAMA galaxies with spectroscopic redshifts in the range 0.2< z <0.8, and a background sample of H-ATLAS galaxies with photometric redshifts ∼>1.2. It constitutes a substantial improvement over the cross-correlation measurements made by Gonzalez-Nuevo et al. (2014) with updated catalogues and wider area (with S / N ∼> 5 below 10 arcmin and reaching S / N ∼ 20 below 30 arcsec). The better statistics allow us to split the sample in different redshift bins and to perform a tomographic analysis (with S / N ∼> 3 below 10 arcmin and reaching S / N ∼ 15 below 30 arcsec). Moreover, we implement a halo model to extract astrophysical information about the background galaxies and the deflectors that are producing the lensing link between the foreground (lenses) and background (sources) samples. In the case of the sources, we find typical mass values in agreement with previous studies: a minimum halo mass to host a central galaxy, M {sub min}∼ 10{sup 12.26} M {sub ⊙}, and a pivot halo mass to have at least one sub-halo satellite, M {sub 1∼} 10{sup 12.84} M {sub ⊙}. However, the lenses are massive galaxies or even galaxy groups/clusters, with minimum mass of M {sub min}{sup lens}∼ 10{sup 13.06} M {sub ⊙}. Above a mass of M {sub 1}{sup lens}∼ 10{sup 14.57} M {sub ⊙} they contain at least one additional satellite galaxy which contributes to the lensing effect. The tomographic analysis shows that, while M {sub 1}{sup lens} is almost redshift independent, there is a clear evolution of increase M {sub min}{sup lens} with redshift in agreement with theoretical estimations. Finally, the halo modeling allows us to identify a strong lensing contribution to the cross-correlation for angular scales below 30 arcsec. This interpretation is supported by the results of basic but effective simulations.

79 ASTRONOMY AND ASTROPHYSICS↗

Vacuum Strength of Two Candidate Glasses for a Space Observatory

The strengths of two candidate glass types for use in a space observatory were measured. Samples of ultra-low expansion glass (ULE) and borosilicate (Pyrex) were tested in air and in vacuum at room temperature (20 C) and in vacuum after being heated to 200 C. Both glasses tested in vacuum showed an increase in strength over those tested in air. However, there was no statistical difference between the strength of samples tested in vacuum at room temperature and those tested in vacuum after heating to 200 C.

Manning, T. a.↗