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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 883 records · Page 49
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

Direct Observation of the Orientational Anisotropy of Buried Hydroxyl Groups inside Muscovite Mica

Muscovite mica (001) is a widely-used model surface for controlling molecular assembly and a common substrate for environmental adsorption processes. The mica (001) surface displays near trigonal symmetry, but many molecular adsorbates — including water — exhibit unequal probabilities of alignment along its three nominally equivalent lattice directions. Buried hydroxyl groups within the muscovite structure are speculated to be responsible, but direct evidence is lacking. Here we utilize vibrational sum frequency generation spectroscopy (vSFG) to characterize the orientation and hydrogen-bonding environment of near-surface hydroxyls inside mica. Multiple distinct peaks are detected in the O-H stretch region, which we attribute to Si/Al substitution in the SiO4 tetrahedron and K+ ion adsorption above the hydroxyls based on density functional theory simulations. Our findings demonstrate that vSFG can identify the absolute orientation of –OH groups and hence the surface termination at a mica surface, providing a means to investigate how –OH groups influence molecular adsorption and better understand mica stacking-sequences and physical behavior.

Tuladhar, Aashish↗
DOE OSTI2019

A New Multi-Scale State Estimation Framework for the Next Generation of Power Grid EMS

Accurate system state information under various operation conditions is a prerequisite for power grid monitoring and efficient control. To achieve that goal, a new multi-scale state estimation framework is proposed, paving the way for the development of next generation of energy management system (EMS). The developed framework consists of three key components, namely the static state estimation (SSE) module, the dynamic state estimation (DSE) module, the interfaces and switching logics between the two modules. Specifically, the singular spectrum analysis (SSA)-based change point detection approach is developed to monitor the system continuously. If no event is detected by the SSA, the robust SSE using both SCADA and PMU measurements is executed. Otherwise, the event is declared and the results from SSE are used to derive the initial condition for DSE. During the transient process, only PMU-based DSE is executed for system monitoring and it will be terminated when SSA does not detect any change point of the system. After that, the DSE results are forwarded for SSE initialization and bus voltage magnitude and angle estimations. Simulation results carried out on the IEEE 39-bus system demonstrate the effectiveness and benefits of the proposed framework.

Power system state estimation, energy management s↗
DOE OSTI2012

Feasibility Study: Ductless Hydronic Distribution Systems with Fan Coil Delivery

Hydronic distribution systems have a long history, and are widely used in commercial buildings. As with mini-split heat pumps, hydronic systems using small terminal fan coils have the potential to provide high-quality comfort to homes that have small heating and cooling loads, but at a lower cost and with greater flexibility. These “ductless hydronic” distribution systems eliminate space requirements needed for ducting, eliminate duct thermal losses, and are easy to zone. Since heat pump chiller-heaters can be charged with refrigerant at the factory, hydronic systems also avoid refrigerant system faults such as incorrect charge and inadequate evacuation of lines that can lead to sub-standard performance. Other advantages include: reduction in the amount of energy required to deliver heating and cooling, reduced equipment cycling, and the potential for incorporating energy storage for peak load avoidance and demand response. Ductless hydronic systems are best suited for new homes, but with the relative ease of installing piping in attic spaces (for example under attic insulation), they are also suitable for existing homes that have old, leaky, and poorly insulated ducts. With a broader and more affordable product offering from manufacturers, installation guidelines, and contractor training, this method of distribution has significant potential to meet the space conditioning needs of high performance homes. The primary objectives of this study are to estimate potential energy savings relative to conventional ducted air distribution, and to identify equipment requirements, costs, and barriers. The analysis focuses on ductless hydronic delivery systems that use water-to-air terminal units in each zone. This system type is applicable in all climate regions and can provide sensible and latent cooling and/or heating using a single hot and chilled water source such as a heat pump, or a separate water heater and chiller. Results of TRNSYS modeling indicate that annual heating and cooling energy use (site and source) can be reduced by up to 22% when substituting pipes, pump, small distributed fan coils, and a water-to-air heat pump for the ducts, air handler, indoor coil, and conventional air-to-air heat pump unit of similar rating as the air-to-water unit. Of the 22% savings, on average 36% is attributable to the lower energy required by pumps and small fans vs. air handler blowers, and 64% to the reduced losses from pipes as compared to ducts. Using the modeled energy savings and estimated costs, hydronic distribution appears to be economically viable in three of the four climates evaluated. Other current field studies of air-to-water heat pumps coupled to radiant floor systems are demonstrating heat pump performance that exceeds seasonal performance calculated using a standard heat pump performance map (German, 2011a, German, 2011b). Hydronic distribution systems can meet sensible and latent cooling needs in all climates. Major barriers to widespread application include the lack of low-cost, small, ceiling-mounted fan coils, and the limited availability and higher cost of air-to-water heat pumps. The latter could be overcome by the production of an add-on refrigerant-to-water conversion kit that could be used to adapt any heat pump to serve as a water chiller-heater. Development of accurate performance maps and additional data on field performance are areas that should be targeted by future research.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2019

Understanding the conversion of ethanol to propene on In 2 O 3 from first principles

It is highly desirable to convert bioethanol to value-added chemicals. As such, conversion of ethanol to propene (ETP) is attractive because propene is an important raw material for the production of plastics. In 2 O 3 has shown promising catalytic performance for ETP conversion. However, the underlying mechanisms remain elusive. Here, we use density functional theory (DFT) to investigate ETP reaction pathways on the In 2 O 3 (110) surface. We find that the ETP reactions proceed through three major stages: ethanol to acetaldehyde, acetaldehyde to acetone, and acetone to propene. The ethanol-to-acetaldehyde step is kinetically facile. Comparing the two pathways from acetaldehyde to acetone, we show that the aldol reaction pathway via direct coupling of two acetaldehyde is more favorable than the acetate-ketonization pathway. The acetone-to-propene process is found to be the rate-limiting step of the overall reaction. This work provides a detailed mechanistic view of the ETP chemistry on In 2 O 3 (110) that paves the way for further exploration of effects such as surface termination, surface doping, and co-feeding of H 2 and H 2 O on selectivity and catalyst stability.

09 BIOMASS FUELS↗
DOE OSTI2017

Process Parameter Evaluation and Optimization for Advanced Material Development Final Report CRADA No. TC-1234-96

This project was established as a three-year collaboration to produce and characterize · silica aerogels prepared by a Rapid Supercritical Extraction (RSCE) process to meet . BNA, Inc. application requirements. The objectives of this project were to study the parameters necessary to produce optimized aerogel parts with narrowly specified properties and establish the range and limits of the process for producing such aerogels. The project also included development of new aerogel materials useful for high temperature applications. The results of the project were expected to set the conditions necessary to produce quantities of aerogels having particular specifications such as size, shape, density, and mechanical strength. BNA, Inc. terminated the project on April 7, 1999, 10-months prior to the anticipated completion date, due to termination of corporate funding for the project. The technical accomplishments achieved are outlined in Paragraph C below.

36 MATERIALS SCIENCE↗
DOE OSTI2017

Structure of Energetic Particle Mediated Shocks Revisited

The structure of collisionless shock waves is often modified by the presence of energetic particles that are not equilibrated with the thermal plasma (such as pickup ions [PUIs] and solar energetic particles [SEPs]). This is relevant to the inner and outer heliosphere and the Very Local Interstellar Medium (VLISM), where observations of shock waves (e.g., in the inner heliosphere) show that both the magnetic field and thermal gas pressure are less than the energetic particle component pressures. Voyager 2 observations revealed that the heliospheric termination shock (HTS) is very broad and mediated by energetic particles. PUIs and SEPs contribute both a collisionless heat flux and a higher-order viscosity. We show that the incorporation of both effects can completely determine the structure of collisionless shocks mediated by energetic ions. Since the reduced form of the PUI-mediated plasma model is structurally identical to the classical cosmic ray two-fluid model, we note that the presence of viscosity, at least formally, eliminates the need for a gas sub-shock in the classical two-fluid model, including in that regime where three are possible. By considering parameters upstream of the HTS, we show that the thermal gas remains relatively cold and the shock is mediated by PUIs. We determine the structure of the weak interstellar shock observed by Voyager 1 . We consider the inclusion of the thermal heat flux and viscosity to address the most general form of an energetic particle-thermal plasma two-fluid model.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2011

Spin State, Structure, and Reactivity of Terminal Oxo and Dioxygen Complexes of the (PNP)Rh Moiety

[Rh{sup III}H{l_brace}(tBu{sub 2}PCH{sub 2}SiMe{sub 2}NSiMe{sub 2}CH{sub 2}PtBu{l_brace}CMe{sub 2}CH{sub 2}{r_brace}){r_brace}], ([RhH(PNP*)]), reacts with O{sub 2} in the time taken to mix the reagents to form a 1:1 {eta}{sub 2}-O{sub 2} adduct, for which O-O bond length is discussed with reference to the reducing power of [RhH(PNP*)]; DFT calculations faithfully replicate the observed O-O distance, and are used to understand the oxidation state of this coordinated O{sub 2}. The reactivity of [Rh(O{sub 2})(PNP)] towards H{sub 2}, CO, N{sub 2}, and O{sub 2} is tested and compared to the associated DFT reaction energies. Three different reagents effect single oxygen atom transfer to [RhH(PNP*)]. The resulting [RhO(PNP)], characterized at and above -60 C and by DFT calculations, is a ground-state triplet, is nonplanar, and reacts, above about +15 C, with its own tBu CH bond, to cleanly form a diamagnetic complex, [Rh(OH){l_brace}N(SiMe{sub 2}CH{sub 2}PtBu{sub 2})(SiMe{sub 2}CH{sub 2}PtBu{l_brace}CMe{sub 2}CH{sub 2}{r_brace}){r_brace}].

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2015

Structures of three polycystic kidney disease-like domains from Clostridium histolyticum collagenases ColG and ColH

Clostridium histolyticum collagenases ColG and ColH are segmental enzymes that are thought to be activated by Ca 2+ -triggered domain reorientation to cause extensive tissue destruction. The collagenases consist of a collagenase module (s1), a variable number of polycystic kidney disease-like (PKD-like) domains (s2a and s2b in ColH and s2 in ColG) and a variable number of collagen-binding domains (s3 in ColH and s3a and s3b in ColG). The X-ray crystal structures of Ca 2+ -bound holo s2b (1.4 Å resolution, R = 15.0%, R free = 19.1%) and holo s2a (1.9 Å resolution, R = 16.3%, R free = 20.7%), as well as of Ca 2+ -free apo s2a (1.8 Å resolution, R = 20.7%, R free = 27.2%) and two new forms of N-terminally truncated apo s2 (1.4 Å resolution, R = 16.9%, R free = 21.2%; 1.6 Å resolution, R = 16.2%, R free = 19.2%), are reported. The structurally similar PKD-like domains resemble the V-set Ig fold. In addition to a conserved β-bulge, the PKD-like domains feature a second bulge that also changes the allegiance of the subsequent β-strand. This β-bulge and the genesis of a Ca 2+ pocket in the archaeal PKD-like domain suggest a close kinship between bacterial and archaeal PKD-like domains. Different surface properties and indications of different dynamics suggest unique roles for the PKD-like domains in ColG and in ColH. Surface aromatic residues found on ColH s2a-s2b, but not on ColG s2, may provide the weak interaction in the biphasic collagen-binding mode previously found in s2b-s3. B -factor analyses suggest that in the presence of Ca 2+ the midsection of s2 becomes more flexible but the midsections of s2a and s2b stay rigid. The different surface properties and dynamics of the domains suggest that the PKD-like domains of M9B bacterial collagenase can be grouped into either a ColG subset or a ColH subset. The conserved properties of PKD-like domains in ColG and in ColH include Ca 2+ binding. Conserved residues not only interact with Ca 2+ , but also position the Ca 2+ -interacting water molecule. Ca 2+ aligns the N-terminal linker approximately parallel to the major axis of the domain. Ca 2+ binding also increases stability against heat and guanidine hydrochloride, and may improve the longevity in the extracellular matrix. The results of this study will further assist in developing collagen-targeting vehicles for various signal molecules.

Bauer, Ryan↗
DOE OSTI2012

Architecture of a Full-length Retroviral Integrase Monomer and Dimer, Revealed by Small Angle X-ray Scattering and Chemical Cross-linking

We determined the size and shape of full-length avian sarcoma virus (ASV) integrase (IN) monomers and dimers in solution using small angle x-ray scattering. The low resolution data obtained establish constraints for the relative arrangements of the three component domains in both forms. Domain organization within the small angle x-ray envelopes was determined by combining available atomic resolution data for individual domains with results from cross-linking coupled with mass spectrometry. The full-length dimer architecture so revealed is unequivocally different from that proposed from x-ray crystallographic analyses of two-domain fragments, in which interactions between the catalytic core domains play a prominent role. Core-core interactions are detected only in cross-linked IN tetramers and are required for concerted integration. The solution dimer is stabilized by C-terminal domain (CTD-CTD) interactions and by interactions of the N-terminal domain in one subunit with the core and CTD in the second subunit. These results suggest a pathway for formation of functional IN-DNA complexes that has not previously been considered and possible strategies for preventing such assembly.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

Mini-Ckpts: Surviving OS Failures in Persistent Memory

Concern is growing in the high-performance computing (HPC) community on the reliability of future extreme-scale systems. Current efforts have focused on application fault-tolerance rather than the operating system (OS), despite the fact that recent studies have suggested that failures in OS memory are more likely. The OS is critical to a system's correct and efficient operation of the node and processes it governs -- and in HPC also for any other nodes a parallelized application runs on and communicates with: Any single node failure generally forces all processes of this application to terminate due to tight communication in HPC. Therefore, the OS itself must be capable of tolerating failures. In this work, we introduce mini-ckpts, a framework which enables application survival despite the occurrence of a fatal OS failure or crash. Mini-ckpts achieves this tolerance by ensuring that the critical data describing a process is preserved in persistent memory prior to the failure. Following the failure, the OS is rejuvenated via a warm reboot and the application continues execution effectively making the failure and restart transparent. The mini-ckpts rejuvenation and recovery process is measured to take between three to six seconds and has a failure-free overhead of between 3-5% for a number of key HPC workloads. In contrast to current fault-tolerance methods, this work ensures that the operating and runtime system can continue in the presence of faults. This is a much finer-grained and dynamic method of fault-tolerance than the current, coarse-grained, application-centric methods. Handling faults at this level has the potential to greatly reduce overheads and enables mitigation of additional fault scenarios.

Fiala, David↗
DOE OSTI2014

Cluster-Expanded Solids: A Strategy for Assembling Functional Porous Materials

This grant provided (partial) support for the research efforts of three graduate students and two undergraduate students. The intention of the program was to explore the use of molecular precursors in generating functional porous materials with precisely tailored structures and properties. Prior work in our laboratory had demonstrated the feasibility of employing face-capped octahedral clusters of the type [Re 6 Q 8 (CN) 6 ] 3-/4- (Q = S, Se, Te) in the expansion of known metal-cyanide frameworks. For example, the use of [Re 6 Se 8 (CN) 6 ] 4- as a reactant in place of [Fe(CN) 6 ] 4- resulted in formation of Fe 4 [Re 6 Se 8 (CN) 6 ] 3 ·36H 2 O, featuring an expanded form of the porous three-dimensional framework of Prussian blue (Fe 4 [Fe(CN) 6 ] 3 ·14H 2 O). This compound could be dehydrated without loss of integrity, and the increase in void volume significantly enhances its capacity as a molecular sieve, enabling absorption of larger molecules. For this project, we continued with our efforts to devise new routes to microporous coordination solids that function as molecular sieves, sensors, or catalysts. In particular, our focus was on: (i) the synthesis of new molecular precursors of specific utility for such purposes, and (ii) attempts to incorporate these and existing molecular precursors into new coordination solids. Investigations of the terminal ligand substitution chemistry of the carbon-centered, trigonal prismatic cluster [W 6 CCl 18 ] 2- generated the solvated species [W 6 CCl 12 (DMF) 6 ] 2+ and [W 6 CCl 12 (py) 6 ] 2+ , as well as the potential framework building units [W 6 C(CN) 18 ] 3- , [W 6 CCl 12 (pyrazine) 6 ] 2+ , [W 6 CCl 12 (4-cyanopyridine) 6 ] 2+ , and [W 6 CCl 12 (4,4'-bipyridine) 6 ] 2+ . Efforts to produce microporous magnets capable of performing magnetic separations led to characterization of the microporous Prussian blue analogues CsNi[Cr(CN) 6 ] and Cr 3 [Cr(CN) 6 ] 2 ·6H 2 O. With BET surface areas of 370 m 2 /g and 390 m 2 /g, respectively, these compounds exhibit show ferrimagnetic ordering at temperatures of 65 and 220 K, respectively, the highest ordering temperatures yet observed for any microporous magnet. Efforts to produce actinide-based cluster building units were also undertaken, as were experiments probing the reactivity of new metal-organic frameworks possessing coordinatively-unsaturated metal centers. This research further provided an excellent opportunity for training graduate and undergraduate students in the synthesis and characterization of inorganic materials.

36 MATERIALS SCIENCE↗
DOE OSTI2012

RADIO OBSERVATIONS REVEAL UNUSUAL CIRCUMSTELLAR ENVIRONMENTS FOR SOME TYPE Ibc SUPERNOVA PROGENITORS

We present extensive radio observations of the nearby Type Ibc supernovae (SNe Ibc) 2004cc, 2004dk, and 2004gq spanning {Delta}t Almost-Equal-To 8-1900 days after explosion. Using a dynamical model developed for synchrotron emission from a slightly decelerated shock wave, we estimate the velocity and energy of the fastest ejecta and the density profile of the circumstellar medium. The shock waves of all three supernovae are characterized by non-relativistic velocities of v-bar approx. (0.1-25)c and associated energies of E Almost-Equal-To (2-10) Multiplication-Sign 10{sup 47} erg, in line with the expectations for a typical homologous explosion. Smooth circumstellar density profiles are indicated by the early radio data and we estimate the progenitor mass-loss rates to be M-dot approx. (0.6-13) x 10{sup -5} M{sub Sun} yr{sup -1} (wind velocity, v{sub w} = 10{sup 3} km s{sup -1}). These estimates approach the saturation limit ( M-dot {approx}10{sup -4} M{sub Sun} yr{sup -1}) for line-driven winds from Wolf-Rayet stars, the favored progenitors of SNe Ibc including those associated with long-duration gamma-ray bursts. Intriguingly, at later epochs all three supernovae show evidence for abrupt radio variability that we attribute to large density modulations (factor of {approx}3-6) at circumstellar radii of r Almost-Equal-To (1-50) Multiplication-Sign 10{sup 16} cm. If due to variable mass loss, these modulations are associated with progenitor activity on a timescale of {approx}10-100 years before explosion. We consider these results in the context of variable mass-loss mechanisms including wind clumping, metallicity-independent continuum-driven ejections, and binary-induced modulations. It may also be possible that the SN shock waves are dynamically interacting with wind termination shocks; however, this requires the environment to be highly pressurized and/or the progenitor to be rapidly rotating prior to explosion. The proximity of the density modulations to the explosion sites may suggest a synchronization between unusual progenitor mass loss and the SN explosion, reminiscent of Type IIn supernovae. This study underscores the utility of radio observations for tracing the final evolutionary stage(s) of SN progenitor systems.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

Perdeuteration, crystallization, data collection and comparison of five neutron diffraction data sets of complexes of human galectin-3C

Galectin-3 is an important protein in molecular signalling events involving carbohydrate recognition, and an understanding of the hydrogen-bonding patterns in the carbohydrate-binding site of its C-terminal domain (galectin-3C) is important for the development of new potent inhibitors. The authors are studying these patterns using neutron crystallography. Here, the production of perdeuterated human galectin-3C and successive improvement in crystal size by the development of a crystal-growth protocol involving feeding of the crystallization drops are described. The larger crystals resulted in improved data quality and reduced data-collection times. Furthermore, protocols for complete removal of the lactose that is necessary for the production of large crystals of apo galectin-3C suitable for neutron diffraction are described. Five data sets have been collected at three different neutron sources from galectin-3C crystals of various volumes. It was possible to merge two of these to generate an almost complete neutron data set for the galectin-3C–lactose complex. As a result, these data sets provide insights into the crystal volumes and data-collection times necessary for the same system at sources with different technologies and data-collection strategies, and these insights are applicable to other systems.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs

Frogs are an ecologically diverse and phylogenetically ancient group of anuran amphibians that include important vertebrate cell and developmental model systems, notably the genus Xenopus. Here we report a high-quality reference genome sequence for the western clawed frog, Xenopus tropicalis, along with draft chromosome-scale sequences of three distantly related emerging model frog species, Eleutherodactylus coqui, Engystomops pustulosus, and Hymenochirus boettgeri. Frog chromosomes have remained remarkably stable since the Mesozoic Era, with limited Robertsonian (i.e., arm-preserving) translocations and end-to-end fusions found among the smaller chromosomes. Conservation of synteny includes conservation of centromere locations, marked by centromeric tandem repeats associated with Cenp-a binding surrounded by pericentromeric LINE/L1 elements. This work explores the structure of chromosomes across frogs, using a dense meiotic linkage map for X. tropicalis and chromatin conformation capture (Hi-C) data for all species. Abundant satellite repeats occupy the unusually long (~20 megabase) terminal regions of each chromosome that coincide with high rates of recombination. Both embryonic and differentiated cells show reproducible associations of centromeric chromatin and of telomeres, reflecting a Rabl-like configuration. Our comparative analyses reveal 13 conserved ancestral anuran chromosomes from which contemporary frog genomes were constructed.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2012

Magnetron-sputter epitaxy of {beta}-FeSi{sub 2}(220)/Si(111) and {beta}-FeSi{sub 2}(431)/Si(001) thin films at elevated temperatures

{beta}-FeSi{sub 2} thin films have been grown on Si(111) and Si(001) substrates by magnetron-sputter epitaxy at 700 Degree-Sign C. On Si(111), the growth is consistent with the commonly observed orientation of [001]{beta}-FeSi{sub 2}(220)//[1-10]Si(111) having three variants, in-plane rotated 120 Degree-Sign with respect to one another. However, on Si(001), under the same growth conditions, the growth is dominated by [-111]{beta}-FeSi{sub 2}(431)//[110]Si(001) with four variants, which is hitherto unknown for growing {beta}-FeSi{sub 2}. Photoelectron spectra reveal negligible differences in the valance-band and Fe2p core-level between {beta}-FeSi{sub 2} grown on Si(111) and Si(001) but an apparent increased Si-oxidization on the surface of {beta}-FeSi{sub 2}/Si(001). This phenomenon is discussed and attributed to the Si-surface termination effect, which also suggests that the Si/Fe ratio on the surface of {beta}-FeSi{sub 2}(431)/Si(001) is larger than that on the surface of {beta}-FeSi{sub 2}(220)/Si(111).

36 MATERIALS SCIENCE↗
DOE OSTI2022

Crystallization-induced emission enhancement of alkyl chain-dependent pyrene-based luminogens: Visual detection of nitro-explosives

In view of the widespread applications and urgent need for efficient blue emitting materials, the synthesis of such materials has seen renewed interest. In the present work, three alkyl chain-dependent blue emitting pyrene-based luminogens were synthesized and characterized. Here, the experimental results show that these luminogens exhibited high photoluminescence efficiency both in solution (>86%) and in the solid state (>35%). Interestingly, 1,3,6,8-tetrakis (pentylphenyl)pyrene (TPPy), as a photoelectric functional material, was endowed with higher quantum yield (72%) and competitiveness due to a remarkable crystallization-induced emission enhancement (CIEE) property. More importantly, TPPy exhibits high sensitivity and selectivity for ortho-nitroaniline (o-NA) with low limit of detection (9.99 × 10 -8 M), which is mainly due to the distinctive odd-even effects of the terminal alkyl chain. The results demonstrate that this type of luminogen can potentially be utilized for practical applications in the field of contaminant or explosive detection as a sensitive and portable fluorimeter.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2015

Arabidopsis SEIPIN Proteins Modulate Triacylglycerol Accumulation and Influence Lipid Droplet Proliferation

The lipodystrophy protein SEIPIN is important for lipid droplet (LD) biogenesis in human and yeast cells. In contrast with the single SEIPIN genes in humans and yeast, there are three SEIPIN homologs in Arabidopsis thaliana, designated SEIPIN1, SEIPIN2, and SEIPIN3. Essentially nothing is known about the functions of SEIPIN homologs in plants. Here, a yeast (Saccharomyces cerevisiae) SEIPIN deletion mutant strain and a plant (Nicotiana benthamiana) transient expression system were used to test the ability of Arabidopsis SEIPINs to influence LD morphology. In both species, expression of SEIPIN1 promoted accumulation of large-sized lipid droplets, while expression of SEIPIN2 and especially SEIPIN3 promoted small LDs. Arabidopsis SEIPINs increased triacylglycerol levels and altered composition. In tobacco, endoplasmic reticulum (ER)-localized SEIPINs reorganized the normal, reticulated ER structure into discrete ER domains that colocalized with LDs. N-terminal deletions and swapping experiments of SEIPIN1 and 3 revealed that this region of SEIPIN determines LD size. Ectopic overexpression of SEIPIN1 in Arabidopsis resulted in increased numbers of large LDs in leaves, as well as in seeds, and increased seed oil content by up to 10% over wild-type seeds. By contrast, RNAi suppression of SEIPIN1 resulted in smaller seeds and, as a consequence, a reduction in the amount of oil per seed compared with the wild type. Finally, overall, our results indicate that Arabidopsis SEIPINs are part of a conserved LD biogenesis machinery in eukaryotes and that in plants these proteins may have evolved specialized roles in the storage of neutral lipids by differentially modulating the number and sizes of lipid droplets.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Generation, Transfer, and Loss of Alternative Oxidase Paralogues in the Aspergillaceae Family

Alternative oxidase (Aox) is a terminal oxidase operating in branched electron transport. The activity correlates positively with overflow metabolisms in certain Aspergilli, converting intracellular glucose by the shortest possible path into organic acids, like citrate or itaconate. Aox is nearly ubiquitous in fungi, but aox gene multiplicity is rare. Nevertheless, within the family of the Aspergillaceae and among its various species of industrial relevance—Aspergillus niger, A. oryzae, A. terreus, Penicillium rubens—paralogous aox genes coexist. Paralogous genes generally arise from duplication and are inherited vertically. Here, we provide evidence of four independent duplication events along the lineage that resulted in aox paralogues (aoxB) in contemporary Aspergillus and Penicillium taxa. In some species, three aox genes are co-expressed. The origin of the A. niger paralogue is different than that of the A. terreus paralogue, but all paralogous clades ultimately arise from ubiquitous aoxA parent genes. We found different patterns of uncorrelated gene losses reflected in the Aspergillus pedigree, albeit the original aoxA orthologues persist everywhere and are never replaced. The loss of acquired paralogues co-determines the contemporary aox gene content of individual species. In Aspergillus calidoustus, the two more ancient paralogues have, in effect, been replaced by two aoxB genes of distinct origins.

59 BASIC BIOLOGICAL SCIENCES↗