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Implicity restarted Arnoldi/Lanczos methods for large scale eigenvalue calculations

Eigenvalues and eigenfunctions of linear operators are important to many areas of applied mathematics. The ability to approximate these quantities numerically is becoming increasingly important in a wide variety of applications. This increasing demand has fueled interest in the development of new methods and software for the numerical solution of large-scale algebraic eigenvalue problems. In turn, the existence of these new methods and software, along with the dramatically increased computational capabilities now available, has enabled the solution of problems that would not even have been posed five or ten years ago. Until very recently, software for large-scale nonsymmetric problems was virtually non-existent. Fortunately, the situation is improving rapidly. The purpose of this article is to provide an overview of the numerical solution of large-scale algebraic eigenvalue problems. The focus will be on a class of methods called Krylov subspace projection methods. The well-known Lanczos method is the premier member of this class. The Arnoldi method generalizes the Lanczos method to the nonsymmetric case. A recently developed variant of the Arnoldi/Lanczos scheme called the Implicitly Restarted Arnoldi Method is presented here in some depth. This method is highlighted because of its suitability as a basis for software development.

Sorensen, Danny C.

[Activities of ICASE}

This report summarizes research conducted at ICASE in applied mathematics, computer science, fluid mechanics, and structures and material sciences during the period October 1, 2000 through March 31, 2001.

Bushnell, Dennis M.

[Activities of ICASE]

This report summarizes research conducted at ICASE in applied mathematics, computer science, fluid mechanics, and structures and material sciences during the period April 1, 2001 through September 30, 2001.

Bushnell, Dennis M.

[ICASE Semiannual Report]

This report summarizes research conducted at ICASE in applied mathematics, fluid mechanics, computer science, and structures and material sciences during the period October 1, 2001 through March 31, 2002.

Bushnell, Dennis M.

Annual Research Briefs, 2004: Center for Turbulence Research

This report contains the 2004 annual progress reports of the Research Fellows and students of the Center for Turbulence Research in its eighteenth year of operation. Since its inception in 1987, the objective of the CTR has been to advance the physical understanding of turbulent flows and development of physics based predictive tools for engineering analysis and turbulence control. Turbulence is ubiquitous in nature and in engineering devices. The studies at CTR have been motivated by applications where turbulence effects are significant; these include a broad range of technical areas such as planetary boundary layers, formation of planets, solar convection, magnetohydrodynamics, environmental and eco systems, aerodynamic noise, propulsion systems and high speed transportation. Numerical simulation has been the predominant research tool at CTR which has required a critical mass of researchers in numerical analysis and computer science in addition to core disciplines such as applied mathematics, chemical kinetics and fluid mechanics. Maintaining and promoting this interdisciplinary culture has been a hallmark of CTR and has been responsible for the realization of the results of its basic research in applications. The first group of reports in this volume are directed towards development, analysis and application of novel numerical methods for ow simulations. Development of methods for large eddy simulation of complex flows has been a central theme in this group. The second group is concerned with turbulent combustion, scalar transport and multi-phase ows. The nal group is devoted to geophysical turbulence where the problem of solar convection has been a new focus of considerable attention recently at CTR.

Moin, Parviz

GEO Population Estimates using Optical Survey Data

Optical survey data taken using the NASA Michigan Orbital Debris Survey Telescope (MODEST) gives us an opportunity to statistically sample faint object population in the Geosynchronous (GEO) and near-GEO environment. This paper will summarize the MODEST survey work that has been conducted by NASA since 2002, and will outline the techniques employed to arrive at the current population estimates in the GEO environment for dim objects difficult to detect and track using current systems in the Space Surveillance Network (SSN). Some types of orbits have a higher detection rate based on what parts of the GEO belt is being observed, a straightforward statistical technique is used to debias these observations to arrive at an estimate of the total population potentially visible to the telescope. The size and magnitude distributions of these fainter debris objects are markedly different from the catalogued population. GEO debris consists of at least two different populations, one which follows the standard breakup power law and one which has anomalously high Area-to-Mass Ratios (1 to approx. 30 square meters per kilogram; a sheet of paper = approx. 13 square meters per kilogram). The Inter-Agency Space Debris Coordination Committee (IADC) is investigating objects in GEO orbits with anomalously high Area-to-Mass Ratios (AMRs). The ESA Space Debris Telescope discovered this population and has and its properties of inclinations (0 to 30 degrees), changing eccentricities (0 and 0.6), and mean motions (approx. 1 rev), will be presented. The accepted interpretation of this orbital behavior is that solar radiation pressure drives the perturbations causing time varying inclinations and eccentricities. The orbital parameters are unstable for this population and thus difficult to predict. Their dim visual magnitudes and photometric variability make observations a challenge. The IADC has enlisted a series of observatories (participating institutions: University of Michigan/CTIO, Astronomical Institute University of Bern, Boeing LTS / AMOS, Keldysh Institute of Applied Mathematics) at different longitudes. Complete observational coverage over periods of days to months will provide a better understanding of the properties, such as solar radiation pressure effects on orbital elements, size, shape, attitude, color variations, and spectral characteristics. Results from recent observational programs will be summarized, and includes a description of the orbit elements prediction processes, a summary of the metric tracking performance, and some photometric characteristics of this class of debris.

Barker, Edwin S.

A Fast Method of Deriving the Kirchhoff Formula for Moving Surfaces

The Kirchhoff formula for a moving surface is very useful in many wave propagation problems, particularly in the prediction of noise from rotating machinery. Several publications in the last two decades have presented derivations of the Kirchhoff formula for moving surfaces in both time and frequency domains. Here we present a method originally developed by Farassat and Myers in time domain that is both simple and direct. It is based on generalized function theory and the useful concept of imbedding the problem in the unbounded three-dimensional space. We derive an inhomogeneous wave equation with the source terms that involve Dirac delta functions with their supports on the moving data surface. This wave equation is then solved using the simple free space Green's function of the wave equation resulting in the Kirchhoff formula. The algebraic manipulations are minimal and simple. We do not need the Green's theorem in four dimensions and there is no ambiguity in the interpretation of any terms in the final formulas. Furthermore, this method also gives the simplest derivation of the classical Kirchhoff formula which has a fairly lengthy derivation in physics and applied mathematics books. The Farassat-Myers method can be used easily in frequency domain.

Farassat, F.

Educational Projects in Unmanned Aerial Systems at the NASA Ames Research Center

Unmanned aerial systems (UAS), autonomy and robotics technology have been fertile ground for developing a wide variety of interdisciplinary student learning opportunities. In this talk, several projects will be described that leverage small fixed-wing UAS that have been modified to carry science payloads. These aircraft provide a unique hands-on experience for a wide range of students from college juniors to graduate students pursuing degrees in electrical engineering, aeronautical engineering, mechanical engineering, applied mathematics, physics, structural engineering and other majors. By combining rapid prototyping, design reuse and open-source philosophies, a sustainable educational program has been organized structured as full-time internships during the summer, part-time internships during the school year, short details for military cadets, and paid positions. As part of this program, every summer one or more UAS is developed from concept through design, build and test phases using the tools and facilities at the NASA Ames Research Center, ultimately obtaining statements of airworthiness and flight release from the Agency before test flights are performed. In 2016 and 2017 student projects focused on the theme of 3D printed modular airframes that may be optimized for a given mission and payload. Now in its fifth year this program has served over 35 students, and has provided a rich learning experience as they learn to rapidly develop new aircraft concepts in a highly regulated environment, on systems that will support principal investigators at university, NASA, and other US federal agencies.

UA

Numerical Fluxes and Shocks

Accurately describing shocks within numerical partial differential equation solvers has been a significant computational hurdle for the field of applied mathematics. In our work we present and discuss the background and history of how shocks have been dealt with. We have analyzed numerical schemes and fluxes for the purpose of education and improved computational speed and accuracy. We demonstrate the need for specific methods to deal with shocks by showcasing some methods in a simple one dimensional case for burger’s equation. We aim to extend our knowledge to the euler equations.

Partial Differential Equations

Improving Regional Air Quality Forecasting Through Chemical Data Assimilation and Dynamic Emissions Adjustment

Poor air quality (AQ) is one of the most important human-health and environmental problems facing the United States (US). In addition to the detrimental impacts on human- and environmental-health, poor AQ has an economic cost of ~5% of the US gross domestic product (~$790 billion). AQ managers use AQ analyses and modeling to better understand, anticipate, and avoid poor AQ events. Our research focuses on improving AQ analysis/forecast skill, predictability, and emission estimates through improved and more efficient: (i) modeling and data assimilation strategies; (ii) dynamic emissions adjustment strategies; and (iii) use of satellite remote-sensing Earth observations (e.g., MOPITT, IASI, MODIS, OMI, TROPOMI, TEMPO, etc.). This seminar will review: (i) regional chemical weather forecasting/data assimilation with dynamic emissions adjustment with WRF-Chem/DART; (ii) strategies for efficiently assimilating satellite retrieval profiles with ‘compact phase space retrievals’ (CPSRs); (iii) results from joint assimilation of multiple satellite retrievals at medium (12 km × 12 km) and high (4 km × 4 km) spatial resolutions; and (iv) results from observing system simulation experiments (OSSEs) to investigate whether we can recover COVID-period anthropogenic emissions by assimilating synthetic TEMPO NO2 tropospheric column retrievals with dynamic emissions adjustment. Biographical Sketch: Dr. Mizzi is a Senior Research Fellow working and Dr. Johnson at the NASA Ames Research Center. He holds BA and MS degrees in Environmental Science from the University of Virginia, MS and PhD degrees in Applied Mathematics from the University of Colorado at Boulder (CUB), and a JD degree (with an emphasis in Environmental Law) from the University of Colorado School of Law. He worked at the National Center for Atmospheric Research for nearly 25 years on global atmospheric modeling, dynamic and physical initialization, regional hybrid data assimilation, and most recently on regional chemical data assimilation. He also worked as an environmental attorney and consultant for nearly 15 years. He is an expert in numerical modeling and is recognized internationally as a leading expert in regional, chemical data assimilation with dynamic emissions adjustment. Dr. Mizzi became affiliated with NASA Ames in March 2020 to work on improving AQ analysis/forecast skill, predictability, and ‘top-down’ emissions adjustment though the assimilation of Earth observations. An emphasis of his current work is developing methods for assimilating synthetic TEMPO retrievals to quantify the expected benefits of TEMPO relative to existing AQ observations.

Arthur P. Mizzi

Building a Transdisciplinary, Exascale-Capable Workforce for Geospace Science

Key Points: ●First-principles, self-consistent geospace modeling will require at least exascale-level computing capabilities; however, the technical skills necessary to develop such simulation codes are not taught as part of Heliophysics training/PhD programs. ●Developing exascale Heliophysics codes will require transdisciplinary collaborations between physicists, computer scientists, software engineers, data scientists, and applied mathematics. Such teams must be persistent and formed around specific skills, not specific problems. ●We must have stable, positive long-term career outcomes for Heliophysics scientific developers in order to retain knowledge of and promote future innovation in scientific algorithm development and advanced computing techniques. One such way to do this is by funding long-term scientific programming groups, akin to Heliophysics DRIVE Centers. ●We must have a balance between promoting innovation via funding short-term closed-source development and allowing the open-source community to benefit from and build on the newest scientific modeling techniques.

C Bard

Modeling Protein–Protein and Protein–Ligand Interactions by the ClusPro Team in CASP16

ABSTRACT In the CASP16 experiment, our team employed hybrid computational strategies to predict both protein–protein and protein–ligand complex structures. For protein–protein docking, we combined physics‐based sampling—using ClusPro FFT docking and molecular dynamics—with AlphaFold (AF)‐based sampling, followed by AF‐based refinement. Our method produced numerous high‐accuracy complex models, including cases where AF alone failed, underscoring the critical role of physics‐based sampling alongside deep learning‐based refinement. For protein–ligand docking, we integrated the ClusPro LigTBM template‐based approach with a machine learning‐based confidence model for rescoring. The method preserves conserved interaction fragments derived from homologous complexes, followed by local resampling using physics‐based sampling and a diffusion model. Our template‐based strategy achieved a mean lDDT‐PLI of 0.69 across 233 targets, which was highly competitive. These results demonstrate that combining physics‐based modeling with AI‐driven refinement can significantly enhance the accuracy of both protein–protein and protein–ligand structure predictions.

Ashizawa, Ryota [Department of Applied Mathematics