Biophysical research at LARS-Purdue
Biophysical research at Laboratory for Agricultural Remote Sensing, Purdue University
Hoffer, R. M.↗
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Inversion of radiation data in biophysics
Topics in biophysics are summarized in which radiation data inversion problems occur. The topics fall into two main categories. The first relates to information acquired about the distance environment through seeing, hearing, etc. The second relates to the use of electromagnetic, acoustic, or other radiation for diagnostic purposes, either at a bulk or a molecular level.
Twersky, V.↗
Estimation of biophysical properties of forest canopies through inversion of microwave scatterometer data
A method for estimating the biophysical properties of a forest canopy through inversion of microwave scatterometer data is discussed. A C-band scatterometer flown over an aspen site in northern Minnesota during 19 days from May 2 to October 20, 1984, was modified to enable continuous recording of the range of the target. This provided the backscatter cross section as a function of range and was used to study scattering processes within the canopy. The remote estimates of HH, VV, and HV extinction coefficient values agreed well with the estimates obtained with the use of an active radar calibrator.
Pitts, D. E.↗
Canopy reflectance, photosynthesis, and transpiration. II - The role of biophysics in the linearity of their interdependence
The ability of satellite sensor systems to estimate area-averaged canopy photosynthetic and transpirative properties is evaluated. The near linear relationship between the simple ratio (SR) and normalized difference (ND) and the surface biophysical properties of canopy photosynthetically active radiation (PAR) absorption, photosynthesis, and bulk stomatal resistance is studied. The models utilized to illustrate the processes of canopy reflectance, photosynthesis, and resistance are described. The dependence of SR, the absorbed fraction of PAR, and canopy photosynthesis and resistance on total leaf area index is analyzed. It is noted that the SR and ND vegetation indices and vegetation-dependent qualities are near-linearly related due to the proportion of leaf scattering coefficient in visible and near IR wavelength regions. The data reveal that satellite sensor systems are useful for the estimation of photosynthesis and transpirative properties.
Sellers, P. J.↗
Biophysical, morphological, canopy optical property, and productivity data from the Superior National Forest
Described here are the results of a NASA field experiment conducted in the Superior National Forest near Ely, Minnesota, during the summers of 1983 and 1984. The purpose of the experiment was to examine the use of remote sensing to provide measurements of biophysical parameters in the boreal forests. Leaf area index, biomass, net primary productivity, canopy coverage, overstory and understory species composition data are reported for about 60 sites, representing a range of stand density and age for aspen and spruce. Leaf, needle, and bark high-resolution spectral reflectance and transmittance data are reported for the major boreal forest species. Canopy bidirectional reflectance measurements are provided from a helicopter-mounted Barnes Multiband Modular Radiometer (MMR) and the Thematic Mapper Simulator (TMS) on the NASA C-130 aircraft.
Hall, F. G.↗
Biophysical information in asymmetric and symmetric diurnal bidirectional canopy reflectance
The authors present a theory for partitioning the information content in diurnal bidirectional reflectance measurements in order to detect differences potentially related to biophysical variables. The theory, which divides the canopy reflectance into asymmetric and symmetric functions of solar azimuth angle, attributes asymmetric variation to diurnal changes in the canopy biphysical properties. The symmetric function is attributed to the effects of sunlight interacting with a hypothetical average canopy which would display the average diurnal properties of the actual canopy. The authors analyzed radiometer data collected diurnally in the Thematic Mapper wavelength bands from two walnut canopies that received differing irrigation treatments. The reflectance of the canopies varied with sun and view angles and across seven bands in the visible, near-infrared, and middle infrared wavelength regions. Although one of the canopies was permanently water stressed and the other was stressed in mid-afternoon each day, no water stress signature was unambiguously evident in the reflectance data.
Vanderbilt, Vern C.↗
Covariance of biophysical data with digital topograpic and land use maps over the FIFE site
This paper discusses the biophysical stratification of the FIFE site, implementation of the stratification utilizing geographic information system methods, and validation of the stratification with respect to field measurements of biomass, Bowen ratio, soil moisture, and the greenness vegetation index (GVI) derived from TM satellite data. Maps of burning and topographic position were significantly associated with variation in GVI, biomass, and Bowen ratio. The stratified design did not significantly alter the estimated site-wide means for surface climate parameters but accounted for between 25 and 45 percent of the sample variance depending on the variable.
Davis, F. W.↗
Spectral vegetation indexes and the remote sensing of biophysical parameters
Combinations of remotely sensed data from different spectral bands have been combined into spectral vegetation indexes (SVIs) and used to determine biophysical parameters. The characteristics of two-band SVIs made up of visible and near-infrared reflectances are examined. Two canopy reflectance models, a turbid media model and a geometrical model, are used to study the effects of different canopy structures on the measurement of leaf area index and the fraction of photosynthetically intercepted active radiation.
Huemmrich, Karl F.↗
Retrieval of biophysical parameters with AVIRIS and ISM: The Landes Forest, south west France
The first steps of an experiment for investigating the capability of airborne spectrometer data for retrieval of biophysical parameters of vegetation, especially water conditions are presented. Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) and ISM data were acquired in the frame of the 1991 NASA/JPL and CNES campaigns on the Landes, South west France, a large and flat forest area with mainly maritime pines. In-situ measurements were completed at that time; i.e. reflectance spectra, atmospheric profiles, sampling for further laboratory analyses of elements concentrations (lignin, water, cellulose, nitrogen,...). All information was integrated in an already existing data base (age, LAI, DBH, understory cover,...). A methodology was designed for (1) obtaining geometrically and atmospherically corrected reflectance data, (2) registering all available information, and (3) analyzing these multi-source informations. Our objective is to conduct comparative studies with simulation reflectance models, and to improve these models, especially in the MIR.
Zagolski, F.↗
Biophysical characterization and surface radiation balance
The Kursk 1991 Experiment (KUREX-91) was conducted as one of a suite of international studies to develop capabilities to monitor global change. The studies were designed specifically to understand the earth's land-surface vegetation and atmospheric boundary layer interaction. An intensive field campaign was conducted at a site near Kursk, Russia during the month of July in 1991 by a team of international scientists to aid in the understanding of land-surface-atmosphere interactions in an agricultural/grassland setting. We were one of several teams of scientists participating at KUREX-91 at the Streletskaya Steppe Researve near Kursk, Russia. The main goals of our research were to: (1) characterize biophysical properties of the prairie vegetation; and (2) to characterize radiation regime through measurements and from estimates derived from canopy bidirectional reflectance data. Four objectives were defined to achieve these goals: (1) determine dependence of leaf optical properties on leaf water potential of some dominant species in discrete wavebands in the visible, near-infrared, and mid-infrared (spanning 0.4-2.3 microns range); (2) characterize the effective leaf area index (LAI) and leaf angle distribution of prairie vegetation; (3) characterize the radiation regime of the prairie vegetation through measures of the radiation balance components; and (4) examine, develop, and test methods for estimating albedo, APAR, and LAI from canopy bidirectional reflectance data. Papers which were the result of the research efforts are included.
Walter-Shea, Elizabeth A.↗
Estimation of biophysical properties of upland Sitka spruce (Picea sitchensis) plantations
It is widely accepted that estimates of forest above-ground biomass are required as inputs to forest ecosystem models, and that SAR data have the potential to provide such information. This study describes relationships between polarimetric radar backscatter and key biophysical properties of a coniferous plantation in upland central Wales, U.K. Over the test site, topography was relatively complex and was expected to influence the amount of radar backscatter.
Green, Robert M.↗
Barophysiology and Biophysics
Decompression is an important aspect of extravehicular activity (EVA). Errors can result in decompression sickness (DCS) if the protective measures are too liberal, while valuable on-orbit time is dissipated in prophylactic methodologies that are excessively conservative. Nucleation is an important consideration in many natural events, and its control is very important in many industrial procedures. The amount of Extravehicular Activity (EVA) that will be required during the construction of the International Space Station exceeds all of the other activity combined. The requirements in astronaut time and consumables (breathing oxygen and air) will be considerable. In an attempt to mitigate these requirements, Project ARGO was investigated in 1990 to investigate the effects of gravitational forces on the musculoskeletal system. This work has led to the present plans for the reduction of prebreathe duration. Over the past decade, research has been directed towards an understanding of the biophysical basis of the formation and growth of the decompression gas phase with the goal of improving the efficiency of the EVA process. In the past, we have direct work towards a more complete understanding of gas bubble formation and growth and exercise-enhanced washout during oxygen prebreathe.
Powell, Michael R.↗
On The Development of Biophysical Models for Space Radiation Risk Assessment
Experimental techniques in molecular biology are being applied to study biological risks from space radiation. The use of molecular assays presents a challenge to biophysical models which in the past have relied on descriptions of energy deposition and phenomenological treatments of repair. We describe a biochemical kinetics model of cell cycle control and DNA damage response proteins in order to model cellular responses to radiation exposures. Using models of cyclin-cdk, pRB, E2F's, p53, and GI inhibitors we show that simulations of cell cycle populations and GI arrest can be described by our biochemical approach. We consider radiation damaged DNA as a substrate for signal transduction processes and consider a dose and dose-rate reduction effectiveness factor (DDREF) for protein expression.
Cucinotta, F. A.↗
Gravitropism of cucumber hypocotyls: biophysical mechanism of altered growth
The biophysical basis for the changes in cell elongation rate during gravitropism was examined in aetiolated cucumber (Cucumis sativus L.) hypocotyls. Bulk osmotic pressures on the two sides of the stem and in the epidermal cells were not altered during the early time course of gravitropism. By the pressure-probe technique, a small increase in turgor (0.3 bar, 30 kPa) was detected on the upper (inhibited) side, whereas there was a negligible decrease in turgor on the lower (stimulated) side. These small changes in turgor and water potential appeared to be indirect, passive consequences of the altered growth and the small resistance for water movement from the xylem, and indicated that the change in growth was principally due to changes in wall properties. The results indicate that the hydraulic conductance of the water-transport pathway was large (.25 h-1 bar-1) and the water potential difference supporting cell expansion was no greater than 0.3 bar (30 kPa). From pressure-block experiments, it appeared that upon gravitropic stimulation (1) the yield threshold of the lower half of the stem did not decrease and (2) the wall on the upper side of the stem was not made more rigid by a cross-linking process. Mechanical measurements of the stress/strain properties of the walls showed that the initial development of gravitropism did not involve an alteration of the mechanical behaviour of the isolated walls. Thus, gravitropism in cucumber hypocotyls occurs principally by an alteration of the wall relaxation process, without a necessary change in wall mechanical properties.
Non-NASA Center↗
Rejoining and misrejoining of radiation-induced chromatin breaks. II. Biophysical Model
A biophysical model for the kinetics of the formation of radiation-induced chromosome aberrations is developed to account for the recent experimental results obtained with a combination of the premature chromosome condensation (PCC) and fluorescence in situ hybridization (FISH) techniques. In this model, we consider the broken ends of DNA double-strand breaks (DSBs) to be reactant and make use of the interaction distance hypothesis. The repair/misrepair process between broken ends is suggested to consist of two steps; the first step represents the two break ends approaching each other, and the second step represents the enzymatic processes leading to DNA end-to-end rejoining. Only the second step is reflected in the kinetics observed in experiments using PCC. The model appears to be able to fit existing data for human cells. It is shown that the kinetics of the formation of chromosome aberrations can be explained by a single rate that characterizes both rejoining and misrejoining of DSBs, suggesting that repair and misrepair share the same mechanism. Fast repair (completed in minutes) in a subset of DSBs is suggested as an explanation of the complete exchanges observed with PCC in human lymphocytes immediately after irradiation. The fast repair component seems to be absent in human fibroblasts.
NASA Center JSC↗
Discrimination And Biophysical Characterization Of Brazilian Cerrado Physiognomies With Eo-1 Hyperspectral Hyperion
The savanna, typically found in the sub-tropics and seasonal tropics, are the dominant vegetation biome type in the southern hemisphere, covering approximately 45% of the South America. In Brazil, the savanna, locally known as "cerrado," is the most intensely stressed biome with both natural environmental pressures (e.g., the strong seasonality in weather, extreme soil nutrient impoverishment, and widespread fire occurrences) and rapid/aggressive land conversions (Skole et al., 1994; Ratter et al., 1997). Better characterization and discrimination of cerrado physiognomies are needed in order to improve understanding of cerrado dynamics and its impact on carbon storage, nutrient dynamics, and the prospect for sustainable land use in the Brazilian cerrado biome. Satellite remote sensing have been known to be a useful tool for land cover and land use mapping (Rougharden et al., 1991; Hansen et al., 2000). However, attempts to discriminate and classify Brazilian cerrado using multi-spectral sensors (e.g., Landsat TM) and/or moderate resolution sensors (e.g., NOAA AVHRR NDVI) have often resulted in a limited success due partly to small contrasts depicted in their multiband, spectral reflectance or vegetation index values among cerrado classes (Seyler et al., 2002; Fran a and Setzer, 1998). In this study, we aimed to improve discrimination as well as biophysical characterization of the Brazilian cerrado physiognomies with hyperspectral remote sensing. We used Hyperion, the first satellite-based hyperspectral imager, onboard the Earth Observing-1 (EO-1) platform.
Miura, Tomoaki↗
Space-Based Ornithology: On the Wings of Migration and Biophysics
Understanding bird migration and avian biodiversity is one of the most compelling and challenging problems of modern biology with major implications for human health and conservation biology. Migration and conservation efforts cross national boundaries and are subject to numerous international agreements and treaties. Public interest is high with concerns about avian flu, Katrina and its impacts, and the recent sightings of the ivory-billed woodpecker. Space based technology gives us new opportunities to shed light on the distribution and movement of organisms on the planet and their sensitivity to human disturbances and environmental changes. Together with the USGS and other agencies, we are creating ecological forecasting tools for science and application users to address the consequences of loss of wetlands, flooding, drought or other natural disasters such as hurricanes on avian biodiversity and bird migration. In our work, we use individual organism biophysical models of energy and water balance and drive these models with satellite measurements of spatio-temporal gradients in climate and habitat. Dynamic state variable modeling provides an additional tool for studying bird migration across multiple scales and can be linked to our mechanistic models describing the time and energy budget states of migrating birds. Such models yield an understanding of how a migratory flyway and its component habitats function as a whole and link stop-over ecology with biological conservation and management. We also build upon the canopy done by the Environmental Laboratory over the past few years.
Smith, James A.↗
Unofficial Road Building in the Amazon: Socioeconomic and Biophysical Explanations
Roads have manifold social and environmental impacts, including regional development, social conflicts and habitat fragmentation. 'Road ecology' has emerged as an approach to evaluate the various ecological and hydrological impacts of roads. This article aims to complement road ecology by examining the socio-spatial processes of road building itself. Focusing on the Brazilian Amazon, a heavily-studied context due to forest fragmentation by roads, the authors consider non-state social actors who build 'unofficial roads' for the purpose of gaining access to natural resources to support livelihoods and community development. They examine four case studies of roads with distinct histories in order to explain the socio-spatial processes behind road building in terms of profit maximization, land tenure claims, co-operative and conflictive political ecologies, and constraints as well as opportunities afforded by the biophysical environment. The study cases illustrate the need for a multi-pronged theoretical approach to understanding road building, and call for more attention to the role of non-state actors in unofficial road construction.
Perz, Stephen G.↗