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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 91 records · Page 5
All sourcesNASA NTRSDOE OSTI
NASA NTRS1986

Calibrated Ancillary System (CAS) user's guide, volume 6

The Calibrated Ancillary System (CAS) provides real-time calibrated parameters from the orbiter downlink (ancillary data) to the Goddard Space Flight Center (GSFC). This user's guide contains the introduction to the equipment, operation, general procedures, and specific procedures of CAS. Volume 6 describes ancillary products procedures, enhancement menu and processing task procedures for SDT/TDT (shuttle data tape/telemetry descriptor tape), database errors and network data driver (NDD) product menu procedures, and utility menu procedures.

Source record↗
NASA NTRS1986

Calibrated Ancillary System (CAS) user's guide, volume 7

The Calibrated Ancillary System (CAS) provides real-time calibrated parameters from the orbiter downlink (ancillary data) to the Goddard Space Flight Center (GSFC). This user's guide contains the introduction to the equipment, operation, general procedures, and specific procedures of CAS. Volume 7 describes the data flow engineer (DFE) user mission planning procedures which include instructions for processing the SDT/TDT (shuttle data tape/telemetry descriptor tape).

Source record↗
NASA NTRS1986

Calibrated Ancillary System (CAS) user's guide, volume 8

The Calibrated Ancillary System (CAS) provides real-time calibrated parameters from the orbiter downlink (ancillary data) to the Goddard Space Flight Center (GSFC). This user's guide contains the introduction to the equipment, operation, general procedures, and specific procedures of CAS. Volume 8 describes procedures for invoking checkout software, file maintenance procedures, system manager procedures.

Source record↗
NASA NTRS2005

Going to the Bottom of the Explosion that Formed Cas A

The purpose of this INTEGRAL AO 1 proposal was to observe the gamma-ray lines at 1157 keV, as well as 68 keV and 78 keV of the (44)Ti decay chain from the youngest known galactic supernova remnant Cas A. The radioactive decay of (44)Ti in Cas A was first detected by COMPTEL in the 1157 keV line and later confirmed in the lower energy lines using BeppoSAX data. Despite the second confirming measurement, the flux value still has a considerable error, due to a low signal over background ratio and the poor definition of the continuum background in the range of 70 - 100 keV above the line energies. In addition to improving this flux measurement, INTEGRAL has the unique capability, in principle, to measure the line width of the emission. This type of measurement can further constrain supernova explosion models. Unfortunately, the INTEGRAL instrumental background, especially in the SPI spectrometer, turned out to be significantly higher than estimated at the time of proposal submission before launch. This, and to a smaller extent the reduced effective exposure time of about 1.5 Ms compared to requested 2.5 Ms, has precluded us from reaching the sensitivity necessary for this measurement. Studies of the background variability with the goal of improving background modeling are ongoing, and additional 2.5 Ms observing time has just been approved for the next observing cycle.

Oberlack, Uwe↗
DOE OSTI2018

Type III-A CRISPR-Cas Csm Complexes: Assembly, Periodic RNA Cleavage, DNase Activity Regulation, and Autoimmunity

Type ΙΙΙ CRISPR-Cas systems provide robust immunity against foreign RNA and DNA by sequence-specific RNase and target RNA-activated sequence-nonspecific DNase and RNase activities. We report on cryo-EM structures of Thermococcus onnurineus Csm crRNA binary, Csm crRNA -target RNA and Csm crRNA -target RNA anti-tag ternary complexes in the 3.1 Å range. The topological features of the crRNA 5'-repeat tag explains the 5'-ruler mechanism for defining target cleavage sites, with accessibility of positions -2 to -5 within the 5'-repeat serving as sensors for avoidance of autoimmunity. The Csm3 thumb elements introduce periodic kinks in the crRNA-target RNA duplex, facilitating cleavage of the target RNA with 6-nt periodicity. Key Glu residues within a Csm1 loop segment of Csm crRNA adopt a proposed autoinhibitory conformation suggestive of DNase activity regulation. Finally, these structural findings, complemented by mutational studies of key intermolecular contacts, provide insights into Csm crRNA complex assembly, mechanisms underlying RNA targeting and site-specific periodic cleavage, regulation of DNase cleavage activity, and autoimmunity suppression.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Materials Data on CaS by Materials Project

CaS is Halite, Rock Salt structured and crystallizes in the cubic Fm-3m space group. The structure is three-dimensional. Ca2+ is bonded to six equivalent S2- atoms to form a mixture of edge and corner-sharing CaS6 octahedra. The corner-sharing octahedral tilt angles are 0°. All Ca–S bond lengths are 2.86 Å. S2- is bonded to six equivalent Ca2+ atoms to form a mixture of edge and corner-sharing SCa6 octahedra. The corner-sharing octahedral tilt angles are 0°.

36 MATERIALS SCIENCE↗
DOE OSTI2019

Half-Metallic Ferromagnetism Character in Cr-Doped CaS Diluted Magnetic Insulator and Semiconductor: an Ab Initio Study

The overall aim of this study is to investigate theoretically the structural, electronic, and magnetic properties of calcium sulfide (CaS) doped with chromium (Cr) impurity, in order to conduct a new search dilute magnetic semiconductors (DMS) suitable for different applications in electronics and spintronics. For measuring, the physical property of this compound is implemented using the first principles approach employed in WIEN2K code. The structural characteristics are optimized using the Generalized Gradient Approximation established by Perdew-Burk-Ernzerhof (PBE-GGA). We calculate and minimize the total energy of the three ternary compounds (Ca{sub 0.75}Cr{sub 0.25}S, Ca{sub 0.50}Cr{sub 0.50}S, and Ca{sub 0.25}Cr{sub 0.75}S) in the paramagnetic (PM), ferromagnetic (FM), and antiferromagnetic (AFM) phase. We find all compounds stable in (FM) structure, whereas the modified Becke and Johnson local density approximation (mBJ-LDA) functional has been employed to evaluate the electronic and magnetic properties. Based on our findings, indicate that this system revealed a half-metallic ferromagnetic behavior with half-metallic gap (HM) and 100% spin-polarized at the fermi level for all chromium (Cr) concentrations. This advantageous set of properties is due to the half-metallic behavior, where the majority spin and minority spin exhibit metallic and semiconducting behaviors respectively. The chromium atom is the most important source of the total magnetic moment in these compounds (4 μβ) by comparison with magnetic moments produced by Ca and S atoms, which have minor contribution. Finally, our prediction results require an experimental confirmation in the future.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2019

Improved Stress Tolerance of Saccharomyces cerevisiae by CRISPR-Cas-Mediated Genome Evolution

In bioprocesses, a microorganism with high tolerance to various stresses would be advantageous for efficient bio-based chemical production. Yeast Saccharomyces cerevisiae has long been used in the food industry because of its safety and convenience, and genetically engineered S. cerevisiae strains have been constructed and used for the production of various bio-based chemicals. In this study, we developed a novel genome shuffling method for S. cerevisiae using CRISPR-Cas. By using this, the thermotolerant mutant strain T8-292, which can grow well at 39 °C, was successfully created. The strain also showed higher cell viability in low pH and high ethanol concentration. In addition, the differences in genome structure between mutant and parent strains were suggested by random amplified polymorphic DNA PCR method. Our genome shuffling method could be a promising strategy for improvement of various stress tolerance in S. cerevisiae.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2012

Structure of the Cmr2 Subunit of the CRISPR-Cas RNA Silencing Complex

Cmr2 is the largest and an essential subunit of a CRISPR RNA-Cas protein complex (the Cmr complex) that cleaves foreign RNA to protect prokaryotes from invading genetic elements. Cmr2 is thought to be the catalytic subunit of the effector complex because of its N-terminal HD nuclease domain. Here, however, we report that the HD domain of Cmr2 is not required for cleavage by the complex in vitro. The 2.3 {angstrom} crystal structure of Pyrococcus furiosus Cmr2 (lacking the HD domain) reveals two adenylyl cyclase-like and two {alpha}-helical domains. The adenylyl cyclase-like domains are arranged as in homodimeric adenylyl cyclases and bind ADP and divalent metals. However, mutagenesis studies show that the metal- and ADP-coordinating residues of Cmr2 are also not critical for cleavage by the complex. Our findings suggest that another component provides the catalytic function and that the essential role by Cmr2 does not require the identified ADP- or metal-binding or HD domains in vitro.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Target preference of Type III-A CRISPR-Cas complexes at the transcription bubble

Type III-A CRISPR-Cas systems are prokaryotic RNA-guided adaptive immune systems that use a protein-RNA complex, Csm, for transcription-dependent immunity against foreign DNA. Csm can cleave RNA and single-stranded DNA (ssDNA), but whether it targets one or both nucleic acids during transcription elongation is unknown. Here, we show that binding of a Thermus thermophilus ( T. thermophilus ) Csm (TthCsm) to a nascent transcript in a transcription elongation complex (TEC) promotes tethering but not direct contact of TthCsm with RNA polymerase (RNAP). Biochemical experiments show that both TthCsm and Staphylococcus epidermidis ( S. epidermidis ) Csm (SepCsm) cleave RNA transcripts, but not ssDNA, at the transcription bubble. Taken together, these results suggest that Type III systems primarily target transcripts, instead of unwound ssDNA in TECs, for immunity against double-stranded DNA (dsDNA) phages and plasmids. This reveals similarities between Csm and eukaryotic RNA interference, which also uses RNA-guided RNA targeting to silence actively transcribed genes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2017

Efficiently sampling conformations and pathways using the concurrent adaptive sampling (CAS) algorithm

Molecular dynamics (MD) simulations are useful in obtaining thermodynamic and kinetic properties of bio-molecules but are limited by the timescale barrier, i.e., we may be unable to efficiently obtain properties because we need to run microseconds or longer simulations using femtoseconds time steps. While there are several existing methods to overcome this timescale barrier and efficiently sample thermodynamic and/or kinetic properties, problems remain in regard to being able to sample un- known systems, deal with high-dimensional space of collective variables, and focus the computational effort on slow timescales. Hence, in this work, a new sampling method, called the “Concurrent Adaptive Sampling (CAS) algorithm,” has been developed to tackle these three issues and efficiently obtain conformations and pathways. The method is not constrained to use only one or two collective variables, unlike most reaction coordinate-dependent methods. Instead, it can use a large number of collective vari- ables and uses macrostates (a partition of the collective variable space) to enhance the sampling. The exploration is done by running a large number of short simula- tions, and a clustering technique is used to accelerate the sampling. In this paper, we introduce the new methodology and show results from two-dimensional models and bio-molecules, such as penta-alanine and triazine polymer

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

The period analysis of V418 AQL, SU BOO, RV CVn, CR CAS, GV CYG, V432 PER, and BD+42 2782

The minimum timings of eclipsing binaries V418 Aql, SU Boo, RV CVn, CR Cas, GV Cyg, V432 Per, and BD+42 2782 were collected and analyzed. Their long-term behavior was studied via period analysis, revealing a periodic term in eclipse times. We derived 576 new times of minimum. Hence, to describe the periodic variation, a third-body hypothesis was proposed and the resulting orbital periods are as follows: 70, 7.4, 53, 37, 27, 53, and 18 yr, respectively. For the system V432 Per an additional 9.5 yr variation was also found. The predicted minimum masses of these distant bodies were calculated and their detectability discussed. The light curves of SU Boo and RV CVn were analyzed using the PHOEBE program, resulting in physical parameters of the components. New variable stars in the field of V418 Aql were discovered.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

New constraints on the cooling of the central compact object in CAS A

To examine the previously claimed fast cooling of the Central Compact Object (CCO) in the Cas A supernova remnant (SNR), we analyzed two Chandra observations of this CCO, taken in a setup minimizing instrumental spectral distortions. We fit the two CCO X-ray spectra from 2006 and 2012 with hydrogen and carbon neutron star atmosphere models. The temperature and flux changes in the 5.5 yr between the two epochs depend on the adopted constraints on the fitting parameters and the uncertainties of the effective area calibrations. If we allow a change of the equivalent emitting region size, R {sub Em}, the effective temperature remains essentially the same. If R {sub Em} is held constant, the best-fit temperature change is negative, but its statistical significance ranges from 0.8σ to 2.5σ, depending on the model. If we assume that the optical depth of the ACIS filter contaminant in 2012 was ±10% different from its default calibration value, the significance of the temperature drop becomes 0.8σ-3.1σ, for the carbon atmospheres with constant R {sub Em}. Thus, we do not see a statistically significant temperature drop in our data, but the involved uncertainties are too large to firmly exclude the previously reported fast cooling. Our analysis indicate a decrease of 4%-6% (1.9σ-2.9σ significance) for the absorbed flux in the energy range 0.6-6 keV between 2006 and 2012, most prominent in the ≈1.4-1.8 keV energy range. It could be caused by unaccounted changes of the detector response or contributions from unresolved SNR material along the line of sight to the CCO.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

Nonthermal radiation of young supernova remnants: The case of Cas A

The processes responsible for the broadband radiation of the young supernova remnant Cas A are explored by using a new code that is designed for a detailed treatment of the diffusive shock acceleration of particles in the nonlinear regime. The model is based on spherically symmetric hydrodynamic equations complemented with transport equations for relativistic particles. Electrons, protons, and the oxygen ions accelerated by forward and reverse shocks are included in the numerical calculations. We show that the available multi-wavelength observations in the radio, X-ray, and gamma-ray bands can be best explained by invoking particle acceleration by both forward and reversed shocks. Although the TeV gamma-ray observations can be interpreted by interactions of both accelerated electrons and protons/ions, the measurements by Fermi Large Area Telescope at energies below 1 GeV give a tentative preference to the hadronic origin of gamma-rays. Then, the acceleration efficiency in this source, despite the previous claims, should be very high; 25% of the explosion energy (or approximately 3 × 10{sup 50} erg) should already be converted to cosmic rays, mainly by the forward shock. At the same time, the model calculations do not provide extension of the maximum energy of accelerated protons beyond 100 TeV. In this model, the acceleration of electrons is dominated by the reverse shock; the required 10{sup 48} erg can be achieved under the assumption that the injection of electrons (positrons) is supported by the radioactive decay of {sup 44}Ti.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2014

Calibrating the updated overshoot mixing model on eclipsing binary stars: HY Vir, YZ Cas, χ{sup 2} Hya, and VV Crv

Detached eclipsing binary stars with convective cores provide a good tool to investigate convective core overshoot. It has been performed on some binary stars to restrict the classical overshoot model which simply extends the boundary of the fully mixed region. However, the classical overshoot model is physically unreasonable and inconsistent with helioseismic investigations. An updated model of overshoot mixing was established recently. There is a key parameter in the model. In this paper, we use observations of four eclipsing binary stars, i.e., HY Vir, YZ Cas, χ{sup 2} Hya, and VV Crv, to investigate a suitable value for the parameter. It is found that the value suggested by calibrations on eclipsing binary stars is the same as the value recommended by other methods. In addition, we have studied the effects of the updated overshoot model on the stellar structure. The diffusion coefficient of convective/overshoot mixing is very high in the convection zone, then quickly decreases near the convective boundary, and exponentially decreases in the overshoot region. The low value of the diffusion coefficient in the overshoot region leads to weak mixing and a partially mixed overshoot region. Semi-convection, which appears in the standard stellar models of low-mass stars with convective cores, is removed by partial overshoot mixing.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

CRISPR-Cas “Non-Target” Sites Inhibit On-Target Cutting Rates

CRISPR-Cas systems have become ubiquitous for genome editing in eukaryotic as well as bacterial systems. Cas9 forms a complex with a guide RNA (gRNA) and searches DNA for a matching sequence (target site) next to a protospacer adjacent motif (PAM). Once found, Cas9 cuts the DNA. Cas9 is revolutionary for the ability to change the RNA sequence and target a new site easily. However, while algorithms have been developed to predict gRNA-specific Cas9 activity, a fundamental biological understanding of gRNA-specific activity is lacking. Here, the number of PAM sites in the genome is effectively a large pool of inhibitory substrates, competing with the target site for the Cas9/gRNA complex. We demonstrate that increasing the number of non-target sites for a given gRNA reduces on-target activity in a dose-dependent manner. Furthermore, we show that the use of Cas9 mutants with increased PAM specificity toward a smaller subset of PAMs (or smaller pool of competitive substrates) improves cutting rates, while increased PAM promiscuity decreases cutting rates. Decreasing the potential search space by increasing PAM specificity provides a path toward improving on-target activity for slower high-fidelity Cas9 variants. Engineering improved PAM specificity to reduce the competitive search space offers an alternative strategy to engineer Cas9 variants with increased specificity and maintained on-target activity.

24 POWER TRANSMISSION AND DISTRIBUTION↗