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Enabling Model Organism and Commercial Astronaut Data Access Through the NASA Open Science Data Repository

NASA’s Open Science Data Repository (OSDR) brings together omics data from NASA’s GeneLab project and non-omics data, including physiological, phenotypic, imaging, and behavioral data from NASA’s Ames Life Sciences Data Archive (ALSDA) collected from decades of space biology research, providing open and FAIR (findable, accessible, interoperable, and reusable) access of these precious data to scientists world-wide. This rich source of meticulously curated metadata and data from spaceflight and analog studies has been mined by the scientific community resulting in dozens of high impact scientific publications that reveals a complex network of molecular and physiological effects of spaceflight across living systems, from microbes to plants, to mammals. Understanding how these effects translate to the human condition is critical as we move deeper into the era of commercial space travel. However, the integration of data, specifically omics data, from astronauts is particularly challenging due to their sensitive nature. OSDR has risen to this challenge by developing a mechanism to control access to identifiable levels of omics data, such as raw sequence data, while enabling public access to processed, unidentifiable, data and associated metadata that will allow the scientific community to interrogate human astronaut data alongside data from model organisms to begin answering these critical questions. The 2021 SpaceX Inspiration4 (I4) mission collected a comprehensive atlas of biological measurements from four civilian astronauts, providing a wealth of data to characterize the effects of spaceflight on the human body. These data include both non-omics and omics assays such as direct RNA sequencing (RNA-seq), single nuclei ATAC-seq and RNA-seq, metagenomics, proteomics, and comprehensive metabolic and cytokine panels, all of which have been integrated into the OSDR system across no less than 9 studies. Each study has been carefully curated using community-backed OSDR standards for sample and assay level metadata ensuring these data are findable and accessible. In addition to hosting both raw and processed data from the principal investigator team for each assay type, the GeneLab team plans to re-process the I4 omics data using GeneLab’s standard processing pipelines. The GeneLab processed data outputs will allow for comparisons across studies on OSDR and enable visualization of these data through the OSDR data visualization platform thereby enabling data reusability and interoperability. Here we describe the robust privacy and security protocols implemented by OSDR to safeguard sensitive health data from astronauts while facilitating metadata and processed data sharing for research purposes. We further provide a road map for navigating the vast amount of data provided for each I4 study on the OSDR, including experimental design, associated experiments, payloads, and missions, data generation and analysis protocols, and associated scientific articles. Additionally, we illustrate how to interrogate the standardized metadata provided in the sample and assay tables as well as instructions for how to download and access the data. The I4 datasets described here re present the first ever comprehensive collection of commercial astronaut data.

Amanda M Saravia-Butler↗

Observational constraints on interchange models at Jupiter

Data from the Voyager plasma science instrument are used to set limits on transport models for the inner Jovian magnetosphere. The instrument has an effective time resolution for detecting changes in density of 0.24 s, which corresopnds to a spatial resolution of about 20 km (equal to the gyroradius of an oxygen ion) in the region just outside of Io. This resolution enables an upper limit of about 10 percent to be set on changes in density between adjacent magnetic flux tubes, which rules out transport models which invoke inward motion of near empty flux tubes to replace outward-moving flux tubes carrying Iogenic plasma.

Richardson, John D.↗

Anomaly Detection in Flight Operational Data Using Deep Learning

In this session, we demonstrate two recently developed deep learning models for anomaly detection in flight operational data by the Data Sciences Group at NASA Ames Research Center. The first model is Convolutional Variational Auto-Encoder (CVAE) [1], which is an unsupervised deep encoder-decoder model, designed specifically for finding anomalies in heterogeneous multivariate time series data. We will demonstrate its application to finding anomalies in streaming data from NASA’s Digital Information Platform’s Fuser source. CVAE identifies data instances that are not representative of expected nominal behavior as anomalous. Since it is an unsupervised approach, the flagged anomalies will need to be reviewed by the subject matter experts (SMEs) for validation and labeling and is designed to assist with vulnerability discovery within Safety Monitoring System programs. The second model is Robust and Explainable Semi-supervised Anomaly Detection (RESAD) model [2], which builds on CVAE to allow learning from both minimally labeled data (previously reviewed by the SMEs) as well as majority unlabeled data. RESAD takes advantage of graph theoretic techniques to propagate the labels from the labeled data to the unlabeled data based on a pre-defined similarity metric and structures the learned feature space from flight time-series so that data of the same class would cluster tightly together. This model characteristic is enabled by training with an augmented loss function and allows learning of a more informative feature space for down-stream tasks such as search and active learning. We demonstrate RESAD using data from the NASA DASHlink project [3].

anomaly detection↗

International Planetary Data Alliance (IPDA) Information Model

This document is the third deliverable of the International Planetary Data Alliance (IPDA) Archive Data Standards Requirements Identification project. The goal of the project is to identify a subset of the standards currently in use by NASAs Planetary Data System (PDS) that are appropriate for internationalization. As shown in the highlighted sections of Figure 1, the focus of this project is the Information Model component of the Data Architecture Standards, namely the object models, a data dictionary, and a set of data formats.

information model↗

AeroFusion: Data Fusion and Uncertainty Quantification for Entry Vehicles

AeroFusion is a NASA Langley initiative to incorporate advances in data science into the aerodynamic modeling process to improve efficiency. The effort can largely be categorized in three components: reduced-order modeling techniques, surrogate modeling techniques, and uncertainty quantification. By combining various methods from these categories, AeroFusion aims to reduce the development cost of aerodynamic models, both in terms of time and money.

Steven Snyder↗

AeroFusion: Data Fusion and Uncertainty Quantification for Entry Vehicles

AeroFusion is a NASA Langley initiative to incorporate advances in data science into the aerodynamic modeling process to improve efficiency. The effort can largely be categorized in three components: reduced-order modeling techniques, surrogate modeling techniques, and uncertainty quantification. By combining various methods from these categories, AeroFusion aims to reduce the development cost of aerodynamic models, both in terms of time and money.

Steven Snyder↗

Game-Changing Science with SmallSats and Hosted Payloads

This talk outlines the opportunities using space-based remote sensing to collect the basic climate research data that will serve as the foundation of our science, our models, and our predictive capabilities. With SmallSats and hosted payloads to supplement data from our traditional large spacecraft, and with constellations of SmallSats and with hosted payloads, the Science Mission Directorate is able to make new types of observations, such as synchronic temporal and spatial measurements of the same events. Our data enables science-based decision making. Our models and predictions inform and educate our decision makers at every level.

remote sensing↗

Enhancing Dataset Discovery and Usage Tracking in Earth Sciences: Integrating Knowledge Graphs and Large Language Models

NASA's Data Active Archive Centers (DAACs) have played a crucial role in supporting a wide range of applied research in Earth and Environmental sciences. To date, over 20,000 publications have been collected, citing more than 3,000 NASA Earth science datasets. We present an innovative approach that links datasets and collected publications through a knowledge graph (KG). This KG enables the tracking of dataset citations throughout the dataset's lifecycle, revealing patterns of dataset usage across various applied research areas. We fine-tuned the pre-trained NASA IMPACT INDUS-Base Retriever Large Language Model (LLM) using a set of labeled publication abstracts. Our results indicate that 87% of the publications were classified into one of twenty applied research areas, while the remaining 13% were categorized into non-applied research areas. The classified publications linked to datasets are used to discover datasets by users interested in specific applied research and by dataset providers to determine dataset usage for applications.

open-source↗

Simulated Students and Classroom Use of Model-Based Intelligent Tutoring

Two educational uses of models and simulations: 1) Students create models and use simulations ; and 2) Researchers create models of learners to guide development of reliably effective materials. Cognitive tutors simulate and support tutoring - data is crucial to create effective model. Pittsburgh Science of Learning Center: Resources for modeling, authoring, experimentation. Repository of data and theory. Examples of advanced modeling efforts: SimStudent learns rule-based model. Help-seeking model: Tutors metacognition. Scooter uses machine learning detectors of student engagement.

Koedinger, Kenneth R.↗

Exploring Remote Sensing Products Online with Giovanni for Studying Urbanization

Recently, a Large amount of MODIS land products at multi-spatial resolutions have been integrated into the online system, Giovanni, to support studies on land cover and land use changes focused on Northern Eurasia and Monsoon Asia regions. Giovanni (Goddard Interactive Online Visualization ANd aNalysis Infrastructure) is a Web-based application developed by the NASA Goddard Earth Sciences Data and Information Services Center (GES-DISC) providing a simple and intuitive way to visualize, analyze, and access Earth science remotely-sensed and modeled data. The customized Giovanni Web portals (Giovanni-NEESPI and Giovanni-MAIRS) are created to integrate land, atmospheric, cryospheric, and social products, that enable researchers to do quick exploration and basic analyses of land surface changes and their relationships to climate at global and regional scales. This presentation documents MODIS land surface products in Giovanni system. As examples, images and statistical analysis results on land surface and local climate changes associated with urbanization over Yangtze River Delta region, China, using data in Giovanni are shown.

Shen, Suhung↗

Towards a Standard for Provenance and Context for Preservation of Data for Earth System Science

Long-term data sets with data from many missions are needed to study trends and validate model results that are typical in Earth System Science research. Data and derived products originate from multiple missions (spaceborne, airborne and/or in situ) and from multiple organizations. During the missions as well as well past their termination, it is essential to preserve the data and products to support future studies. Key aspects of preservation are: preserving bits and ensuring data are uncorrupted, preserving understandability with appropriate documentation, and preserving reproducibility of science with appropriate documentation and other artifacts. Computer technology provides adequate standards to ensure that, with proper engineering, bits are preserved as hardware evolves. However, to ensure understandability and reproducibility, it is essential to plan ahead to preserve all the relevant data and information. There are currently no standards to identify the content that needs to be preserved, leading to non-uniformity in content and users not being sure of whether preserved content is comprehensive. Each project, program or agency can specify the items to be preserved as a part of its data management requirements. However, broader community consensus that cuts across organizational or national boundaries would be needed to ensure comprehensiveness, uniformity and long-term utility of archived data. The Federation of Earth Science Information Partners (ESIP), a diverse network of scientists, data stewards and technology developers, has a forum for ESIP members to collaborate on data preservation issues. During early 2011, members discussed the importance of developing a Provenance and Context Content Standard (PCCS) and developed an initial list of content items. This list is based on the outcome of a NASA and NOAA meeting held in 1998 under the auspices of the USGCRP, documentation requirements from NOAA and our experience with some of the NASA Earth science missions. The items are categorized into the following 8 high level categories: Preflight/Pre-Operations, Products (Data), Product Documentation, Mission Calibration, Product Software, Algorithm Input, Validation, Software Tools.

Ramaprian, Hampapuram K.↗

NASA's Living with a Star Program: The Geospace Mission Concept

NASA has initiated the Living with a Star Program (LWS) to develop the scientific understanding to address the aspects of the Connected Sun-Earth system that affect life and society. A goal of the program is to bridge the gap between science, engineering, and user application communities. This will enable future science, operational, and commercial objectives in space and atmospheric environments by improving engineering approaches to the accommodation and/or mitigation of the effects of solar variability on technological systems. Three program elements are the Science Missions; a Theory, Modeling, and Data Analysis program; and a Space Environment Testbeds program. Because many of the effects of solar variability on humanity are observed in Geospace regions of space, the science research for all three elements of the LWS Program have significant components in Geospace regions.

Barth, Janet L.↗

A distributed analysis and visualization system for model and observational data

The objective of this proposal is to develop an integrated and distributed analysis and display software system which can be applied to all areas of the Earth System Science to study numerical model and earth observational data from storm to global scale. This system will be designed to be easy to use, portable, flexible and easily extensible and to adhere to current and emerging standards whenever possible. It will provide an environment for visualization of the massive amounts of data generated from satellites and other observational field measurements and from model simulations during or after their execution. Two- and three-dimensional animation will also be provided. This system will be based on a widely used software package from NASA called GEMPAK and prototype software for three dimensional interactive displays built at NCSA. The underlying foundation of the system will be a set of software libraries which can be distributed across a UNIX based supercomputer and workstations.

Wilhelmson, Robert↗

A distributed analysis and visualization system for model and observational data

The objective of this proposal is to develop an integrated and distributed analysis and display software system which can be applied to all areas of the Earth System Science to study numerical model and earth observational data from storm to global scale. This system will be designed to be easy to use, portable, flexible and easily extensible and designed to adhere to current and emerging standards whenever possible. It will provide an environment for visualization of the massive amounts of data generated from satellites and other observational field measurements and from model simulations during or after their execution. Two- and three-dimensional animation will also be provided. This system will be based on a widely used software package from NASA called GEMPAK and prototype software for three-dimensional interactive displays built at NCSA. The underlying foundation of the system will be a set of software libraries which can be distributed across a UNIX based supercomputer and workstations.

Wilhelmson, Robert↗

Deep Space Network Radiometric Remote Sensing Program

Planetary spacecraft are viewed through a troposphere that absorbs and delays radio signals propagating through it. Tropospheric water, in the form of vapor, cloud liquid, and precipitation, emits radio noise which limits satellite telemetry communication link performance. Even at X-band, rain storms have severely affected several satellite experiments including a planetary encounter. The problem will worsen with DSN implementation of Ka-band because communication link budgets will be dominated by tropospheric conditions. Troposphere-induced propagation delays currently limit VLBI accuracy and are significant sources of error for Doppler tracking. Additionally, the success of radio science programs such as satellite gravity wave experiments and atmospheric occultation experiments depends on minimizing the effect of water vapor-induced propagation delays. In order to overcome limitations imposed by the troposphere, the Deep Space Network has supported a program of radiometric remote sensing. Currently, water vapor radiometers (WVRs) and microwave temperature profilers (MTPs) support many aspects of the Deep Space Network operations and research and development programs. Their capability to sense atmospheric water, microwave sky brightness, and atmospheric temperature is critical to development of Ka-band telemetry systems, communication link models, VLBI, satellite gravity wave experiments, and radio science missions. During 1993, WVRs provided data for propagation model development, supported planetary missions, and demonstrated advanced tracking capability. Collection of atmospheric statistics is necessary to model and predict performance of Ka-band telemetry links, antenna arrays, and radio science experiments. Since the spectrum of weather variations has power at very long time scales, atmospheric measurements have been requested for periods ranging from one year to a decade at each DSN site. The resulting database would provide reliable statistics on daily, monthly, and seasonal variations. Only long-term monitoring will prevent biases from being introduced by an exceptionally wet or dry year. Support for planetary missions included tropospheric calibration for the recent Mars Observer gravity wave experiments and Ka-band link experiment (KaBLE). Additionally, several proposed radio science experiments such as profiling planetary atmospheres using satellite occultations and Ka-band gravitational wave searches require advanced radiometer technology development. Finally, there has been a consistent advanced technology program to advance satellite navigational and tracking capabilities. This year that included an experiment with radiometer based tropospheric calibration for a series of VLBI catalog measurements.

tropospheric calibration atmospheric water radio s↗

Data Recipes: Toward Creating How-To Knowledge Base for Earth Science Data

Both the diversity and volume of Earth science data from satellites and numerical models are growing dramatically, due to an increasing population of measured physical parameters, and also an increasing variety of spatial and temporal resolutions for many data products. To further complicate matters, Earth science data delivered to data archive centers are commonly found in different formats and structures. NASA data centers, managed by the Earth Observing System Data and Information System (EOSDIS), have developed a rich and diverse set of data services and tools with features intended to simplify finding, downloading, and working with these data. Although most data services and tools have user guides, many users still experience difficulties with accessing or reading data due to varying levels of familiarity with data services, tools, and or formats. The data recipe project at Goddard Earth Science Data and Information Services Center (GES DISC) was initiated in late 2012 for enhancing user support. A data recipe is a How-To online explanatory document, with step-by-step instructions and examples of accessing and working with real data (http:disc.sci.gsfc.nasa.govrecipes). The current suite of recipes has been found to be very helpful, especially to first-time-users of particular data services, tools, or data products. Online traffic to the data recipe pages is significant, even though the data recipe topics are still limited. An Earth Science Data System Working Group (ESDSWG) for data recipes was established in the spring of 2014, aimed to initiate an EOSDIS-wide campaign for leveraging the distributed knowledge within EOSDIS and its user communities regarding their respective services and tools. The ESDSWG data recipe group is working on an inventory and analysis of existing data recipes and tutorials, and will provide guidelines and recommendation for writing and grouping data recipes, and for cross linking recipes to data products. This presentation gives an overview of the data recipe activites at GES DISC and ESDSWG. We are seeking requirements and input from a broader data user community to establish a strong knowledge base for Earth science data research and application implementations.

data recipe↗

Space Weather Services at Goddard Space Flight Center

The Space Weather Laboratory (SWL) forms a focal point at GSFC for the generation of space weather tools and information. This information is based on data from space mission and ground observatories, as well as on forefront model calculations conducted at the Community Coordinated Modeling Center (CCMC). CCMC works with the research community to bring to bear the power of communitydeveloped space science models on space weather problems. Data from primarily from NASA missions but also from NOAA and other partner agencies are combined with model results into a fully configurable space weather information display by means of the iSWA system. This information and iSWA form the basis for and SWL-provided service to NASA's robotic mission fleet, which includes forecasts, regular updates, and warnings. This service benefits from a strong partnership with NASA's Space Radiation Analysis Group, and with the US Air Force Weather Agency. In this presentation, we provide a summary of space weather capabilities and services and we present an outlook into the future.

Hesse, M.↗

Policy for Robust Space-based Earth Science, Technology and Applications

Over the past six decades, satellite remote sensing technology has contributed to the transformation of using earth science not only to advance science, but to improve quality of life. With satellite missions launched almost every year, new types of earth science data are being incorporated into science, models and decision-making systems in a broad array of organizations. A challenge for space agencies has been ensuring that satellite missions serve both the scientific community and the applied community of decision makers without the missions becoming unfocused and overly expensive. By understanding and considering the needs of the environmental data and applied research user community early on in the mission-design process, agencies can ensure that satellites meet the needs of multiple constituencies. This paper describes the mission development process in the European Space Agency and the National Aeronautics and Space Administration and compares and contrasts the successes of and challenges faced by these agencies in balancing science and applications within their missions.

Brown, Molly E.↗