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Analyzing Multifaceted Scientific Data with Topological Analytics (Final Technical Report)

This final technical report describes the activities undertaken through Department of Energy, Office of Science, Advanced Scientific Computing Research Early Career award DE-SC-0019039, “Analyzing Multifaceted Scientific Data with Topological Analytics." This report summarizes contributions made toward the research of visualization, machine learning, and topological data analysis of complex simulation data.

97 MATHEMATICS AND COMPUTING

K-3 Refractory Corrosion Test Results, HAL24M2

This report summarizes the refractory corrosion data of the high-Al matrix of Direct Feed High-Level Waste (DFHLW) glasses generated to expand glass compositional ranges. Design of a 20 high-Al glass matrix, HAL24M2, was reported in Russell et al. (2025, in progress). The HAL24M2 glasses were tested for K-3 corrosion and the results are presented in this report. Corrosion of Monofrax K-3 refractory materials in the HAL24M2 glass melts was measured using a crucible-scale method. Two test conditions, 1150 °C/7days and 1200 °C/7days were applied. The melt-line neck corrosion depth of the test coupons was measured by micro-computed tomography (micro-CT). The measured K-3 neck corrosion values were compared to predicted values using the model in Vienna et al. (2024). The model slightly over-predicted the neck corrosion depth of these glasses.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W

Hanford Site Rare Plant Monitoring Report for Calendar Year 2023-2024

This report summarizes rare plant monitoring data collected in calendar years (CY) 2023 through CY 2024 and provides management recommendations accordingly. DOE/RL-2021-35, Central Hanford Rare Plant Management Plan, guides the approach to rare plant monitoring and management at the Hanford Site. In CYs 2023 and 2024, rare plant monitoring efforts occurred on the portion of the Hanford Site managed by the Hanford Field Office (HFO; Figure 1-1), referred to herein as Central Hanford. The goal of monitoring is to collect data to evaluate the conservation status of rare plant species. Surveys conducted in CY 2023 through CY 2024 built on previous monitoring efforts, tracking the abundance and distribution of rare plants at Central Hanford. Results from previous monitoring efforts are included for reference. Monitoring data are submitted to the Washington Natural Heritage Program (WNHP) to evaluate statewide conservation statuses.

54 ENVIRONMENTAL SCIENCES

Hanford Site Rare Plant Monitoring Report for Calendar Year 2025

This report summarizes rare plant monitoring data collected in calendar year (CY) 2025 and provides management recommendations accordingly. DOE/RL-2021-35, Central Hanford Rare Plant Management Plan, guides the approach to rare plant monitoring and management at the Hanford Site. In CY 2025, rare plant monitoring efforts occurred on the portion of the Hanford Site managed by the U.S. Department of Energy, Hanford Field Office (HFO; Figure 1-1), referred to herein as Central Hanford. The goal of monitoring is to collect data to evaluate the conservation status of rare plant species. Surveys conducted in CY 2025 built on previous monitoring efforts, tracking the abundance and distribution of rare plants at Central Hanford. Results from previous monitoring efforts are included for reference. Monitoring data are submitted to the Washington Natural Heritage Program (WNHP), part of the Washington State Department of Natural Resources (WA DNR), to evaluate statewide conservation statuses.

54 ENVIRONMENTAL SCIENCES

Central Hanford Vernal Pool Monitoring Report for Calendar Year 2025

This report summarizes vernal pool monitoring data collected in calendar year (CY) 2025 and provides management recommendations. Monitoring efforts occurred on the portion of the Hanford Site managed by the U.S. Department of Energy, Hanford Field Office (HFO), referred to herein as Central Hanford. The goal of monitoring is to collect data to evaluate the conservation status of this imperiled habitat. Monitoring in CY 2025 built on previous efforts, as reported in HNF-62115, Ecological Monitoring Report Vernal Pools on the Hanford Site.

54 ENVIRONMENTAL SCIENCES

Annual Site Environmental Report Pantex Plant Calendar Year 2024

The 2024 Annual Site Environmental Report (ASER) summarizes Pantex’s status, data, and efforts for the environmental compliance, protection, and restoration programs. It has been prepared in accordance with DOE Order (DOE O) 231.1B, Environment, Safety and Health Reporting, and DOE O 458.1, Radiation Protection of the Public and the Environment. These orders outline the requirements for environmental protection programs at DOE facilities to ensure that programs fully comply with applicable federal, state, and local environmental laws and regulations, executive orders, and DOE policies.

54 ENVIRONMENTAL SCIENCES

Interconnection Timelines and Costs for Distributed Energy Projects in the United States (2000-2025)

These slides summarize and explain empirical data on interconnection timelines and costs for distributed energy projects connected to U.S. utility distribution systems. The study explores how interconnection metrics vary across states, project sizes, technology types, and over time to indicate progress toward simple, fast, and affordable interconnection. Data encompasses 188 utilities in 24 states. Project types include biomass/biofuels, coal, hydropower, natural gas/oil, solar, storage, wind, hybrid, and

Chelminski, Kathryn

Energy dependence of chain fission product yields from neutron-induced fission of 235 U, 238 U, and 239 Pu

The lack of completeness and systematic studies of cumulative fission product yield (FPY) from the three major actinides of 235 U, 238 U, and 239 Pu, over a broad energy range, was the primary motivation for the LLNL-LANL-TUNL collaboration. Given the focus on resolving FPY behavior around fission spectrum neutron energies, our 2016 data provides FPY measurements in fine energy steps in the range of 0.5–5.5 MeV and an additional anchor point at 14.8 MeV. Recently, our collaboration filled the gap between second chance fission and 14.8 MeV, providing a comprehensive study at eleven incident neutron energies from 0.5 to 14.8 MeV. However, during the course of the last measurements, it was found that the reported masses of the actinide deposits in the fission ionization chambers, which were used to measure the number of fissions, were not consistent with the complementary tests. Therefore, some corrections to the old data are needed. The purpose of this paper is to summarize all of the high-yield FPY data obtained for 235 U, 238 U, and 239 Pu isotopes using quasi-monoenergetic neutron beams at 11 incident energies ranging from E n = 0.5 to 14.8 MeV.

Tonchev, A. P. [Lawrence Livermore National Labora

A model to assess Zircaloy’s mechanical property changes following a transient beyond critical heat flux

Maintaining the integrity of nuclear fuel rods is essential for ensuring public health and safety in nuclear power generation. During reactor operation, this integrity is confirmed by demonstrating compliance with established regulatory acceptance criteria. For moderate-frequency events, such as limiting transients and anticipated operational occurrences (AOOs), the current fuel integrity criterion is based on preventing boiling transition. This criterion assumes that prevention of boiling transition will prevent excessive cladding heating and, thus, fuel failure during normal operations. While conservative, this approach places significant constraints on core design, fuel cycle economics, and a plant’s ability to perform major power uprates, leading to suboptimal fuel utilization and inefficient carbon-free energy production. A more efficient approach could be achieved by revising the failure criterion to a material-specific limit rather than strictly preventing the boiling transition, since boiling transition per se is not a cause of fuel cladding failure. Here, as a result, a new licensing framework based on material properties, termed time-at-temperature (t@T), is needed. This approach would allow for brief periods of post–critical heat flux operation during an AOO without compromising safety. Implementing the t@T licensing strategy requires a robust technical foundation in material properties, which must be established through comprehensive data collection on both unirradiated and irradiated fuel and cladding materials. This foundation would enable the development of a safety basis that ensures safe operation while providing greater flexibility and efficiency for reactor operation. This paper documents a thorough review of the available data to establish a baseline knowledge that can inform the development of cladding mechanical models, as well as identify experimental data gaps that need to be addressed in future research. Machine learning and data informatics were utilized to extract the importance of parameters on the t@T parameter. Industry tools were used to perform baseline analyses to define the relevant transient conditions for data analysis. The subsequent review successfully identified applicable experimental data, as well as sufficient data to evaluate changes in cladding mechanical properties following an AOO transient. Rather than developing new models, this work coupled existing irradiation annealing and recrystallization models to calculate changes in hardness, yield stress, and ultimate tensile stress following an AOO event. The findings from this review were summarized to highlight the experimental data needs required to fill remaining gaps and support the development of future t@T licensing methodologies.

Cladding performance

United States Nuclear Data Program Annual Report for Fiscal Year 2025

The US Nuclear Data Program (USNDP) Annual Report for Fiscal Year 2025 summarizes the work of USNDP for the period of October 1, 2024 through September 30, 2025, with respect to the Work Plan for FY 2025 that was prepared in 2024. The Work Plan and Final Report for USNDP are prepared for the DOE Office of Science, Office of Nuclear Physics. The support for the nuclear data activity from sources outside the US Nuclear Data Program is summarized in the staffing table and Appendix A. This leverage amounts to about 22.8 FTE scientific, to be compared with 21.9 FTEs at USNDP units funded by the DOE Office of Science, Office of Nuclear Physics. Since it is often difficult to separate accomplishments funded by various sources, some of the work reported in the present report was accomplished with nuclear data program support leveraged by other funding. FY 2025 was the 25th year in which the USNDP has operated under a Work Plan developed by the program participants. The program continued to carry out important work in support of the DOE mission. The work balances the ongoing collecting, analyzing, and archiving of nuclear physics information critical to basic nuclear research and to the development and improvement of nuclear technologies with the electronic distribution of this information to users in a timely and easily accessible manner. The present section of the report consists of activity summaries for the major components of the USNDP. This is followed by an updated staff level assignment table that reflects the final distribution of effort among the tasks carried out during FY 2025. Then, we continue with the detailed status of work performed during FY 2025.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS

A Survey on Privacy in Graph Neural Networks: Attacks, Preservation, and Applications

Graph Neural Networks (GNNs) have gained significant attention owing to their ability to handle graph-structured data and the improvement in practical applications. However, many of these models prioritize high utility performance, such as accuracy, with a lack of privacy consideration, which is a major concern in modern society where privacy attacks are rampant. To address this issue, researchers have started to develop privacy-preserving GNNs. Despite this progress, there is a lack of a comprehensive overview of the attacks and the techniques for preserving privacy in the graph domain. In this survey, we aim to address this gap by summarizing the attacks on graph data according to the targeted information, categorizing the privacy preservation techniques in GNNs, and reviewing the datasets and applications that could be used for analyzing/solving privacy issues in GNNs. We also outline potential directions for future research in order to build better privacy-preserving GNNs.

97 MATHEMATICS AND COMPUTING

Review of Particle Physics

The Review summarizes much of particle physics and cosmology. Using data from previous editions, plus 3,200 new measurements from 903 papers, we list, evaluate, and average measured properties of gauge bosons and the recently discovered Higgs boson, leptons, quarks, mesons, and baryons. We summarize searches for hypothetical particles such as supersymmetric particles, heavy bosons, axions, dark photons, etc. Particle properties and search limits are listed in Summary Tables. We give numerous tables, figures, formulae, and reviews of topics such as Higgs Boson Physics, Supersymmetry, Grand Unified Theories, Neutrino Mixing, Dark Energy, Dark Matter, Cosmology, Particle Detectors, Colliders, Probability and Statistics. Most of the 118 reviews are updated, including many that are heavily revised.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS

MODE: A Web Application for Interactive Visualization and Exploration of Omics Data

Studies generating transcriptomics, proteomics, lipidomics, and metabolomics (colloquially referred to as “omics”) data allow researchers to find biomarkers or molecular targets, or understand complex biological structures and functions by identifying changes in biomolecule abundance and expression between experimental conditions. Omics data is multi-dimensional and oftentimes summarization techniques such as principal component analysis (PCA) are used to identify high-level patterns in data. Though useful, these summaries don’t allow exploration of detailed patterns in omics data that may have biological relevance. The use of interactive HTML displays with plots allows researchers to interact with omics data at a detailed level, but building these displays requires significant coding expertise. To overcome this barrier, the software MODE was built to empower users to build their own interactive HTML displays to support scientific discovery. These displays are easily shareable, do not depend on a specific operating system, and allow users to effortlessly sort and filter plots by categorical or numerical variables. MODE allows users to build and share these displays with several options for plot design and meta selection. In conclusion, the MODE web application and its capabilities are presented and then demonstrated on lipidomics data from a leaf wounding study.

lipidomics

Physics-informed machine learning for building performance simulation-A review of a nascent field

Building performance simulation (BPS) is critical for understanding building dynamics and behavior, analyzing the performance of the built environment, optimizing energy efficiency, improving demand flexibility, and enhancing building resilience. However, conducting BPS is not trivial. Traditional BPS relies on accurate building energy models, which are primarily physics-based and heavily dependent on detailed building information, expert knowledge, and case-by-case model calibrations, significantly limiting their scalability. With the development of sensing technology and the increased availability of data, there is growing attention and interest in data-driven BPS. However, purely data-driven models often suffer from limited generalization ability and a lack of physical consistency, resulting in poor performance in real-world applications. To address these limitations, recent studies have begun integrating physics priors into data-driven models, a methodology known as physics-informed machine learning (PIML). PIML is an emerging field where its definitions, methodologies, evaluation criteria, application scenarios, and future directions remain open. To bridge those gaps, this study systematically reviews the state-of-the-art PIML for BPS, offering a comprehensive definition of PIML and comparing it to traditional BPS approaches regarding data requirements, modeling effort, performance, and computational cost. We also summarize the commonly used methodologies, validation approaches, application domains, available data sources, open-source packages, and testbeds. In addition, this study provides a general guideline for selecting appropriate PIML models based on BPS applications. Finally, this study identifies key challenges and outlines future research directions, providing a solid foundation and valuable insights to advance R&D of PIML in BPS.

Jiang, Zixin

Challenges and alternatives to empirical orthogonal functions for earth system data

Empirical orthogonal functions (EOFs) applied to gridded Earth system data enables users to diagnose modes of variability with relative ease. Yet, many challenges to interpretation exist such that they must be used with awareness and intention when applied to gridded climate data, especially with large ensembles. Utilizing data from two different Earth system modelling large ensemble frameworks, the Energy Exoscale Earth System Model and the Community Earth System Model, as well as reanalysis data, common EOF pitfalls are summarized and discussed. Challenges include erroneous mode swapping, sign flipping, and the temporal variability of the centers of action. For modes of variability with similar contribution to variance, mode swapping is not uncommon. Sign flipping can occur with almost any mode where the pattern is correct, but the sign is arbitrary. Although the variability of the center of action is not necessarily problematic, it potentially complicates interpretation over multi-century timescales. A wide variety of alternative methods to EOFs exist, but fitness-for-purpose must be evaluated. Additionally, illustrations of alternative methods and examples of proper use are provided. Alternative methods fit into three categories: EOF variants, linear methods, and multilinear methods.

54 ENVIRONMENTAL SCIENCES

Combining physics-based and data-driven models for quantitatively accurate plasma profile prediction that extrapolates well; with application to DIII-D, AUG, and ITER tokamaks

For design, scenario planning, and control, ITER and all other envisioned tokamaks rely on a variety of statistical and physics-based models to extrapolate to unseen regimes; most notably from low plasma current to high. A 'meta-learning' methodology for combining the accuracy of data-driven models with the generalizability of physics-based models is described and tested, yielding a 5–10 percent improvement in performance beyond either alone for the task of extrapolating time-dependent plasma profile prediction from low- to high- plasma current DIII-D tokamak discharges. Meanwhile, it is shown that both machine learning models extrapolated far-distribution and state-of-the-art 'physics-based' profile predictors fare worse than merely assuming plasma profiles do not change from their initial values. Finally, a variety of other mechanisms for helping data-driven models generalize—transfer learning, adding contextual information from physics simulators, and adding data from the ASDEX Upgrade tokamak—are attempted for similar extrapolation tasks but, in the methodology used in this paper, yield no significant improvement beyond simple data-driven models. Results are summarized in figures 15 and 16.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY

Single-cell and spatial omics in plants: from cellular atlases to regulatory mechanisms

Single-cell RNA sequencing (scRNA-seq) has transformed transcriptomic studies by enabling gene expression profiling at the resolution of individual cells within and across a broad range of tissue types, revealing cellular heterogeneity that is obscured in bulk tissue transcriptomes. Over the past decade, improvements in microfluidics and library preparation have drastically increased throughput, allowing tens of thousands of cells to be assayed in a single experiment. Although initially developed in animal systems, scRNA-seq has rapidly emerged as a powerful and widely adopted approach in plant biology. Beyond transcriptomics, the integration of single-cell data with chromatin accessibility, proteomics, metabolomics, and spatial omics is enabling a system-level understanding of plant gene regulation and cellular organization. Network-based analytical frameworks further support the reconstruction of gene regulatory networks and the interpretation of complex single-cell data. In this review, we summarize the current technological landscape of plant single-cell studies, discuss key experimental and analytical challenges, and review emerging strategies for validating single-cell discoveries. We also discuss future directions in applying single-cell technologies to woody perennials plants and bioenergy-relevant crops, emphasizing their potential to accelerate the discovery of cell type-specific regulatory mechanisms underlying growth, stress resilience, and biomass production.

Li, Miaomiao [ORNL] (ORCID:0000000321326168)

Spin-Controllable Dynamics in Defect-Engineered Carbon Nanotubes as Single Photon Emitters: Data-Driven Modeling and Computations

Quantum technologies, such as quantum computing and sensing, require efficient single-photon emission (SPE) sources that operate at room temperature in telecom wavelengths. While several materials can serve as SPE sources, no single platform meets all the criteria for efficiency, ambient operation, and scalability. Single-walled carbon nanotubes (SWCNTs) with covalently attached molecules offer a promising solution. Their SPE can be easily tuned via modifications of the SWCNT's diameter, chirality, and bonded molecules, enabling emission across near-IR to telecom wavelengths at ambient conditions. However, to fully realize the potential of SWCNTs and unlock their quantum capabilities, a deeper understanding of how structural defects from molecular adducts affect their emission and competing photoexcited processes is essential. To address this gap in our knowledge, this project combined quantum chemistry calculations with data-driven methods of cheminformatics (QSAR) and machine learning (ML). The developed computational approaches have provided several design strategies for covalent functionalization of SWCNTs to improve their optical response. The collaboration with Los Alamos National Lab (LANL) enabled direct comparison of computational and experimental data, facilitating method validation. This partnership was enhanced through access to LANL's Center for Integrated Nanotechnologies (CINT) utilizing User Facility Program and summer internships, which provided three NDSU graduate students with hands-on experience at LANL. The outcomes of this project included (1) Advancing the current stage of computational methods in accurate modeling of non-adiabatic spin-dependent photoexcited dynamics and its applicability to nanosystems consisting of thousands of atoms, realized as open-access codes linked to existing DFT-based software; (2) Establishing the relationship between the structure of adducts and SWCNTs and intrinsic excitonic and spin properties of defect states for guiding novel synthetic strategies and experimental probes of chemically functionalized SWCNTs as near-IR emitting materials; (3) Generating virtual libraries of hypothetical functionalized SWCNTs for virtual screening of their chemical structures and optical properties, leveraging new functionalities of SWCNTs; (4) Offering a unique experience for NDSU graduate students that prepared them for future scientific careers related to materials modeling and big data processing. These results were summarized in 12 published journal papers and 3 recently submitted papers. One of a key finding is that the position of defect sites on the SWCNT surface primarily drives the emission redshift (up to 100 meV), while the polarity of the defect-inducing molecules has a much smaller effect (~10 meV). However, the electron-donating or withdrawing properties of a molecule influence selecting reactivity of defect sites. These insights important for optimizing synthetic protocols for desired emissions in SWCNTs. We also revealed that the interaction between two defects at various positions on the SWCNT enhances the redshift and optical activity of states, favoring strong near-IR emission. This suggests that manipulations in defect concentrations is a promising strategy for controlling efficient emission. Mostly important, the defect position was found controllable by the spin states of photoexcited intermediates: Excited aromatic molecules form ortho defects with SWCNTs at their singlet states in the presence of oxygen, while oxygen-free conditions favor para defects via the triplet-state mechanism. Additionally, a heat-activated [2+2] cycloaddition reaction facilitates divalent defect formation with fewer bonding positions that narrows emission bands. These groundbreaking findings have been experimentally validated and significantly advance our understanding of defect chemistry in SWCNTs. Using a novel encoding technique and 3D-MoRSE descriptors, we developed highly accurate ML/QSAR models to predict both the 3D structure and optical properties of SWCNTs with chemical defects. This model enabled the creation of a virtual library of 125,556 structures, providing new insights into the relationship between SWCNT-defect structure and emission.

77 NANOSCIENCE AND NANOTECHNOLOGY