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At least 91 records · Page 5

Watching a signaling protein function: What has been learned over four decades of time-resolved studies of photoactive yellow protein

Photoactive yellow protein (PYP) is a signaling protein whose internal p-coumaric acid chromophore undergoes reversible, light-induced trans-to-cis isomerization, which triggers a sequence of structural changes that ultimately lead to a signaling state. Since its discovery nearly 40 years ago, PYP has attracted much interest and has become one of the most extensively studied proteins found in nature. The method of time-resolved crystallography, pioneered by Keith Moffat, has successfully characterized intermediates in the PYP photocycle at near atomic resolution over 12 decades of time down to the sub-picosecond time scale, allowing one to stitch together a movie and literally watch a protein as it functions. But how close to reality is this movie? To address this question, results from numerous complementary time-resolved techniques including x-ray crystallography, x-ray scattering, and spectroscopy are discussed. Emerging from spectroscopic studies is a general consensus that three time constants are required to model the excited state relaxation, with a highly strained ground-state cis intermediate formed in less than 2.4 ps. Persistent strain drives the sequence of structural transitions that ultimately produce the signaling state. Crystal packing forces produce a restoring force that slows somewhat the rates of interconversion between the intermediates. Moreover, the solvent composition surrounding PYP can influence the number and structures of intermediates as well as the rates at which they interconvert. When chloride is present, the PYP photocycle in a crystal closely tracks that in solution, which suggests the epic movie of the PYP photocycle is indeed based in reality.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Satellite Data Reveals a Recent Increase in Shifting Cultivation and Associated Carbon Emissions in Laos

Although shifting cultivation is the major land use type in Laos, the spatial-temporal patterns and the associated carbon emissions of shifting cultivation in Laos are largely unknown. This study provides a nationwide analysis of the spatial-temporal patterns of shifting cultivation and estimations of the associated carbon emissions in Laos over the last three decades. This study found that shifting cultivation has been expanding and intensifying in Laos, especially in the last five years. The newly cultivated land from 2016-2020 accounted for 4.5% (±1.2%) of the total land area of Laos. Furthermore, the length of fallow periods has been continuously declining, indicating that shifting cultivation is becoming increasingly intensive. Combining biomass derived from GEDI (Global Ecosystem Dynamics Investigation) and shifting cultivation maps and area estimates, we found that the net carbon emissions from shifting cultivation declined in 2001-2015 but increased in 2016-2020. The largest carbon source is conversion from intact forests to shifting cultivation, which contributed to 89% of the total emissions from 2001 to 2020. In addition, there were increased emissions from intensified use of fallow land. This research provides useful information for policymakers in Laos to understand the changes in shifting cultivation and improve land use management. This study not only supports REDD+ (Reducing Emissions from Deforestation and forest Degradation) reporting for Laos but also provides a methodology for tracking carbon emissions and removals of shifting cultivation.

Shifting cultivation↗

A new frontier in laboratory physics: magnetized electron–positron plasmas

We describe here efforts to create and study magnetized electron–positron pair plasmas, the existence of which in astrophysical environments is well-established. Laboratory incarnations of such systems are becoming ever more possible due to novel approaches and techniques in plasma, beam and laser physics. Traditional magnetized plasmas studied to date, both in nature and in the laboratory, exhibit a host of different wave types, many of which are generically unstable and evolve into turbulence or violent instabilities. This complexity and the instability of these waves stem to a large degree from the difference in mass between the positively and the negatively charged species: the ions and the electrons. The mass symmetry of pair plasmas, on the other hand, results in unique behaviour, a topic that has been intensively studied theoretically and numerically for decades, but experimental studies are still in the early stages of development. A levitated dipole device is now under construction to study magnetized low-energy, short-Debye-length electron–positron plasmas; this experiment, as well as a stellarator device that is in the planning stage, will be fuelled by a reactor-based positron source and make use of state-of-the-art positron cooling and storage techniques. Relativistic pair plasmas with very different parameters will be created using pair production resulting from intense laser–matter interactions and will be confined in a high-field mirror configuration. We highlight the differences between and similarities among these approaches, and discuss the unique physics insights that can be gained by these studies.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Turbulence characteristics of an axisymmetric reacting flow

Turbulent sudden expansion flows are of significant theoretical and practical importance. Such flows have been the subject of extensive analytical and experimental study for decades, but many issues are still unresolved. Detailed information on reacting sudden expansion flows is very limited, since suitable measurement techniques have only been available in recent years. The present study of reacting flow in an axisymmetric sudden expansion was initiated under NASA support in December 1983. It is an extension of a reacting flow program which has been carried out with Air Force support under Contract F33615-81-K-2003. Since the present effort has just begun, results are not yet available. Therefore a brief overview of results from the Air Force program will be presented to indicate the basis for the work to be carried out.

Gould, R. D.↗

Wind-Driven Angular Dependence of Sea-Surface Reflectance Measured with an Airborne Doppler Lidar

The effects of wind-stress on the optical properties of the ocean surface have been studied for several decades. In particular, the classic study by Cox and Munk (1954) linking sea-surface wind field to wave slope statistics provides a phenomenology by which the sea-surface wind velocity can be estimated from direct measurement of the wave-modulated surface reflectance. A limited number of studies along these lines have been conducted using airborne or spaceborne lidar systems. In these instances, truthing was provided by in situ ship reports or satellite microwave remote sensing instruments (e.g., ERS scatterometer, SSM/I). During the second deployment of the MACAWS Doppler wind lidar in the summer of 1996 measurements of sea-surface reflectance as a function of azimuth- and nadir-viewing angles were acquired off the California coast. MACAWS data products include directly measured winds, as well as calibrated backscatter/reflectance profiles, thus enabling comparison of the winds inferred from sea-surface reflectance measurements with those deriving from the Doppler-processed direct line-of-sight (LOS) estimates. Additional validation data was extracted from the ERS and SSM/I satellite microwave sensor archives maintained by the JPL Physical Oceanography Distributed Active Archive Center (PO- DAAC).

Tratt, David M.↗

Evidence of an Intrinsic Intraseasonal Oscillation over Tropical South America During Austral Summer

The intraseasonal variation (ISV) in the 30-60 day band, also known as Madden-Julian oscillation (MJO), has been studied for decades. Madden and Julian showed that the oscillation originated from the western Indian Ocean, propagated eastward, got enhanced over the maritime continent and weakened after passing over the dateline. Composite studies showed evidences of a signal in upper and lower level zonal wind propagating around the globe during an oscillation. Theoretical studies pointed out that the interaction with the warm ocean surface and the coupling with the convective and radiative processes in the atmosphere could manifest the oscillation, which propagates eastward via mutual feedbacks between the wave motions and the cumulus heating. Over tropical South America, no independent 30-60 day oscillation has been reported so far, despite that Amazon is the most distinct tropical convection center over the western hemisphere and the fluxes from its surface of tropical rainforests are close to that from the warm tropical ocean. Liebmann et al. showed a distinct spectral peak of 40-50 day oscillation in outgoing longwave radiation (OLR) over tropical South America and considered that was manifested by the MJO propagation. Nogues-Paegle et al. (2000) focused on a dipole pattern of the OLR anomaly with centers of action over the South Atlantic Convergence Zone (SACZ) and the subtropical plain. They used the regional 10-90 day filtered data and demonstrated this pattern could be represented by the fifth mode of the rotated empirical orthogonal function. Its principal component was further analyzed using the singular spectrum analysis. Their result showed two oscillatory modes with periods of 36-40 days and 22-28 days, of which the former was related to the MJO influence and the latter linked to the remote forcing over southwest of Australia, which produced a wave train propagating southeastward, rounding the southern tip of South America and returning back toward the northeast. The 22-28 day mode has distinct impact on SACZ, responsible for the regional seesaw pattern of alternating dry and wet conditions. In this study we will focus on the 30-60-day spectral band and investigate whether the independent oscillation source over tropical South America is existed. First, we will show the seasonal dependence of the tropical South American ISV in Section 3. Then, the leading principal modes of 30-60 day bandpass filtered 850-hPa velocity potential (VP850) will be computed to distinguish the stationary ISV over tropical South America (SISA) from the propagating MJO in the austral summertime in Section 4. The importance of SISA in representing the regional ISV over South America will be discussed. In Section 5, we will demonstrate the mass oscillation regime of SISA, which is well separated from that of MJO by the Andes, and the convective coupling with rainfall. The dynamical response of SISA and the impact on the South American summer monsoon (SASM) will be presented. Finally, we will give the concluding remarks.

Zhou, Jiayu↗

Hy-DAT: A Tool to Address Hydropower Modeling Gaps Using Interdependency, Efficiency Curves, and Unit Dispatch Models

As the power system continues to be flooded with intermittent resources, it becomes more important to accurately assess the role of hydro and its impact on the power grid. While hydropower generation has been studied for decades, dependency of power generation on water availability and constraints in hydro operation are not well represented in power system models used in the planning and operation of large-scale interconnection studies. There are still multiple modeling gaps that need to be addressed; if not, they can lead to inaccurate operation and planning reliability studies, and consequently to unintentional load shedding or even blackouts. As a result, it is very important thathydropower is represented correctly in both steady-state and dynamic power system studies. In this paper, we discuss the development and use of the Hydrological Dispatch and Analysis Tool (Hy-DAT) as an interactive graphical user interface (GUI), that uses a novel methodology to address the hydropower modeling gaps like water availability and inter-dependency using a database, and algorithms, to generate accurate representative models for power system simulation.

Wang, Dewei↗

Universality of Collective Density Fluctuations in Liquids at and away from Equilibrium – An Integrated Neutron Scattering, Theoretical, and Computational Study (Final Technical Report)

Liquids, ubiquitous on earth, are prototypical disordered condensed matter. As the mediate phase between non-structured gases and ordered solids, liquids p ossess intriguing complexities that are absent on either extreme counter phase, especially when they are driven away from equilibrium. Despite decades of studies, the physics of liquids still keeps surprising us and challenges our understanding of condensed matter, emergent phenomena, and complex systems. Among the many interesting properties, the nature of collective dynamics in liquids remains elusive because of both the presence of strong interactions and the absence of translational invariance. This project studied the universal features of collective density fluctuations (or collective modes), which include both phonon-like excitations and collective relaxations, in the Q-dependent generalized hydrodynamic regime in liquids and liquid-like matter both at and away from equilibrium. We performed systematic studies of the fast collective dynamics (including both phonon-like excitations and collective relaxations) of four classes of liquids characterized by different fragilities and interactions using synergistically integrated coherent neutron scattering experiments (Inelastic Neutron Scattering (INS), Quasi-Elastic Neutron Scattering (QENS), and Neutron Spin Echo (NSE)), a ViscoElastic Hydrodynamics theory we have been developing, andMolecular Dynamics (MD) simulations and our analysis package LiquidLib. The transformative knowledge of the collective dynamics in liquids is important to understand and ultimately control the transport of mass, energy, and charge in liquids, both at and away from thermal equilibrium, which may will likely impact a wide range of disciplines.

36 MATERIALS SCIENCE↗

Nanoscopic lipid domains determined by microscopy and neutron scattering

Biological membranes are highly complex supramolecular assemblies, which play central roles in biology. However, their complexity makes them challenging to study their nanoscale structures. To overcome this challenge, model membranes assembled using reduced sets of membrane-associated biomolecules have been found to be both excellent and tractable proxies for biological membranes. Due to their relative simplicity, they have been studied using a range of biophysical characterization techniques. Here, in this review article, we will briefly detail the use of fluorescence and electron microscopies, and X-ray and neutron scattering techniques used over the past few decades to study the nanostructure of biological membranes.

59 BASIC BIOLOGICAL SCIENCES↗

Analysis of Flow Area in the Axial Cross-Vessel Annular Duct Following a Breach of the Primary Helium Boundary of an HTGR

The lock-exchange flow phenomenon has been heavily studied for decades, including the lock-exchange phenomenon that takes place during an air ingress accident in a High-Temperature Gas-cooled Reactor (HTGR) during a break on the axial cross-vessel duct. The present study aims to characterize the gas dynamics in the cavity region of an HTGR, particularly the axial cross-vessel outer duct region. This study computes the velocity and flow area of the heavy and light currents when a break on the primary helium boundary occurs. This analysis is supported using experimental data from experiments conducted in a 1/20th length-scale HTGR. The following study summarizes the conditions of the experiment, the approach adopted to predict the flow area, and future work.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Modulation of ENSO teleconnections over North America by the Pacific decadal oscillation

In this study, we investigate whether the Pacific decadal oscillation (PDO) can enhance or diminish El Niño Southern Oscillation (ENSO) temperature and precipitation teleconnections over North America using five single model initial-condition large ensembles (SMILEs). The use of SMILEs facilitates a statistically robust comparison of ENSO events that occur during different phases of the PDO. We find that a positive PDO enhances winter and spring El Niño temperature and precipitation teleconnections and diminishes La Niña teleconnections. A negative PDO has the opposite effect. The modulation of ENSO by the PDO is mediated by differences in the location and strength of the Aleutian Low and Pacific Jet during ENSO events under different phases of the PDO. This modulation is a simple combination of the individual effects of the PDO and ENSO over North America. Finally, we show that ENSO and the PDO can be used to evaluate the likelihood of the occurrence of temperature and precipitation anomalies in different regions, but cannot be used as a deterministic predictor of these anomalies due to the large variability between individual events.

54 ENVIRONMENTAL SCIENCES↗

The Apollo Sample Suite: 50 Years of Solar System Insight

The Apollo program was undoubtable a crowning achievement in human history. In addition to the obvious cultural significance, scientific results from the Apollo program had a lasting impression on a range of scientific fields, none more so that the effect the samples had on the fields of geology and cosmochemistry. The six Apollo missions collected 382 kg of rock, regolith, and core samples from geologically diverse locations on the Moon. In the nearly 50 years since the first samples were returned, there have been over 3000 different requests for samples, each yielding insights into fields as disparate as biology, medicine, astronomy, engineering, material science, and of course geology. Early studies of the Apollo samples revealed primary insights into the origin and evolution of the Moon, and of the Earth-Moon system, but the results also had implications for bodies throughout the solar system, e.g., defining crater counting rates. Over the decades, continued study of the Apollo samples by new generations of scientists using new instruments have continued to yield significant new discoveries, including the presence of endogenous water in the Moon and the possible presence of a lunar cataclysm, that in turn has contributed to new models of solar system formation and evolution. The Apollo samples have often been used as a proxy for studying other bodies like Mercury or asteroids. The Apollo samples have also directly contributed to the interpretation of remotely sensed data sets, including their use as ground truth for both Clementine and Lunar Prospector global geochemical maps. Despite the Apollo samples being a static collection, recent efforts will ensure that investigators continue to have access to new samples. For example, there was a recent solicitation for study of previously unopened Apollo samples in vacuum-sealed containers, as well as new access to samples stored frozen or in a He atmosphere. Similarly, the use of X-ray computed tomography as part of the curation process is identifying new clasts within polymict breccias that are available for study. Finally, the MoonDB project is putting all previously published lunar geochemical analyses into a searchable database, which should facilitate new investigations.

Zeigler, Ryan↗

Spaceborne Lidar in the Study of Marine Systems

Satellite passive ocean color instruments have provided an unbroken ~20-year record of global ocean plankton properties, but this measurement approach has inherent limitations in terms of spatial-temporal sampling and ability to resolve vertical structure within the water column. These limitations can be addressed by coupling ocean color data with measurements from a spaceborne lidar. Airborne lidars have been used for decades to study ocean subsurface properties, but recent breakthroughs have now demonstrated that plankton properties can be measured with a satellite lidar. The satellite lidar era in oceanography has arrived. Here we present a review of the lidar technique, its applications in marine systems, a prospective on what can be accomplished in the near future with an ocean- and atmosphere-optimized satellite lidar, and a vision for a multi-platform ‘virtual constellation’ of observational assets enabling a 3-dimensional reconstruction of global ocean ecosystems.

Chris A Hostetler↗

Final Status of HEPA Filter 10-Year Lifetime Evaluation

High-efficiency particulate air (HEPA) filters are widely employed by nuclear facilities to remove radiological particulate matter from their effluent exhaust streams. The purpose of this study is to evaluate the relationships between the 10-year HEPA filter lifespan and its other performance indicators. The 10-year-long endeavor to collect and analyze data regarding the lifetime of HEPA filters at the Pacific Northwest National Laboratory began in 2010. Forty-nine HEPA filters were selected and have been surveyed and analyzed at least annually to verify compliance with permit conditions. The study suggests the frequency of filter replacement should be based on the actual operational requirements, such as fume hood face velocity and/or efficiency test results, instead of on the prescribed filter “age limit” of 10 years from the date of manufacture (e.g., birth date) when operating under dry conditions. Over the past decade, the study has now been completed, and all forty-nine HEPA filters have been replaced, due to either technical issues listed in this report, or the previously recommended filter “age limit” of 10 years.

61 RADIATION PROTECTION AND DOSIMETRY↗

Designing clay-polymer nanocomposite sorbents for water treatment: A review and meta-analysis of the past decade

Clay-polymer nanocomposites (CPNs) have been studied for two decades as sorbents for water pollutants, but their applicability remains limited. Our aim in this review is to present the latest progress in CPN research using a meta-analysis approach and identify key steps necessary to bridge the gap between basic research and CPN application. Based on results extracted from 99 research articles on CPNs and 8 review articles on other widely studies sorbents, CPNs had higher adsorption capacities for several inorganic and organic pollutant classes (including heavy metals, oxyanions, and dyes, n = 308 observations). We applied principal component analysis, analysis of variance, and multiple linear regressions to test how CPN and pollutant properties correlated with Langmuir adsorption model coefficients. While adsorption was, surprisingly, not influenced by mineral properties, it was influenced by CPN fabrication method, polymer functional groups, and pollutant properties. For example, among the pollutant classes, heavy metals had the highest adsorption capacity but the lowest adsorption affinity. Conversely, dyes had high adsorption affinities, as reflected by the linear correlation between adsorption affinity and pollutant molecular weight. Scaling from ‘basic research’ to ‘technological application’ requires testing CPN performance in real water, application in columns, comparison to commercial sorbents, regeneration, and cost evaluation. However, our survey indicates that of the 158 observations, only 20 compared the CPN's performance to that of a commercial sorbent. We anticipate that this review will promote the design of smart and functional CPNs, which can then evolve into an effective water treatment technology.

42 ENGINEERING↗

Probing the extent and content of low ionization gas in galaxies: QSO absorption and HI emission

The small projected separations of some QSO's and low-redshift galaxies provide unique opportunities to study the extent and content of gas in galaxies through observation of absorption in the QSO spectra. Observations of these systems provide valuable information on the connection between the absorbing gas and the galaxy, as well as detailed information on the morphology and environment of the galaxy itself. While there is direct evidence that galaxies can produce the intervening-type QSO absorption lines, over the past decade, the study of such 'QSO-galaxy pairs' (at low redshift) has been considered unsuccessful because new detections of absorption were seldom made. A fundamental problem concerning the relation between these low-redshift systems and those seen at moderate to high redshift remains unresolved. Direct and indirect measures of galaxy absorption cross sections at moderate to high redshifts (z is approximately greater than 20.5) are much larger than the optical and HI sizes of local galaxies. However, direct comparison of the low and moderate to high redshift systems is difficult since different ions are observed in different redshift regimes. Observations are presented for a new sample of QSO-galaxy pairs. Nine new QSO's which shine through nearby galaxies (on the sky-plane) were observed to search for CaII absorption in the QSO spectra at the foreground galaxy redshifts.

Womble, Donna S.↗

Browning in Desert Boundaries in Asia in Recent Decades

In this study, the changes in desert boundaries in Asia (Gobi, Karakum, Lut, Taklimakan, and Thar deserts) during the growing season (April October) in the years 1982 2008 were investigated by analyzing the normalized difference vegetation index (NDVI), precipitation, and temperature. In the desert boundary regions, the domain mean NDVI values increased by 7.2% per decade in 1982 1998 but decreased by 6.8% per decade thereafter. Accordingly, the bare soil areas (or nonvegetated areas) of the inside of the desert boundaries contracted by 9.8% per decade in the 1990s and expanded by 8.7% per decade in the 2000s. It is noted that the five deserts experience nearly simultaneous NDVI changes although they cover a very diverse area of Asia. In contrast, changes in temperature and precipitation in the deserts show rather diverse results. In desert boundaries located along 40 N (Gobi, Taklimakan, and Karakum), the decadal changes in vegetation greenness were mainly related to regional climate during the entire analysis period. Precipitation increased in the 1990s, providing favorable conditions for vegetation growth (i.e., greening), but precipitation reduced (19 mm per decade) and warming intensified (0.7 C per decade) in the 2000s, causing less moisture to be available for vegetation growth (i.e., browning). In desert boundaries below 40 N (Lut and Thar), although an increase in precipitation (8 mm per decade) led to greening in the 1990s, local changes in precipitation and temperature did not necessarily cause browning in the 2000s. Observed multidecadal changes in vegetation greenness in the present study suggest that under significant global and/or regional warming, changes in moisture availability for vegetation growth in desert boundaries are an important factor when understanding decadal changes in areas vulnerable to desertification over Asia.

Jeong, Su-Jong↗