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Results for “Fluorescent Dyes”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 91 records · Page 5
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Role of Cell Wall Polysaccharides in Water Distribution During Seed Imbibition of Hymenaea courbaril L.

Seed water imbibition is critical to seedling establishment in tropical forests. The seeds of the neotropical tree Hymenaea courbaril have no oil reserves and have been used as a model to study storage cell wall polysaccharide (xyloglucan - XyG) mobilization.We studied pathways of water imbibition in Hymenaea seeds. To understand seed features, we performed carbohydrate analysis and scanning electron microscopy. We found that the seed coat comprises a palisade of lignified cells, below which are several cell layers with cell walls rich in pectin. The cotyledons are composed mainly of storage XyG. From a single point of scarification on the seed surface, we followed water imbibition pathways in the entire seed using fluorescent dye and NMRi spectroscopy. We constructed composites of cellulose with Hymenaea pectin or XyG. In vitro experiments demonstrated cell wall polymer capacity to imbibe water, with XyG imbibition much slower than the pectin-rich layer of the seed coat.We found that water rapidly crosses the lignified layer and reaches the pectin-rich palisade layer so that water rapidly surrounds the whole seed. Water travels very slowly in cotyledons (most of the seed mass) because it is imbibed in the XyG-rich storage walls. However, there are channels among the cotyledon cells through which water travels rapidly, so the primary cell walls containing pectins will retain water around each storage cell.The different seed tissue dynamic interactions between water and wall polysaccharides (pectins and XyG) are essential to determining water distribution and preparing the seed for germination.

arabinoxylan↗
DOE OSTI2022

Total Internal Reflection of Two Lasers in a Single Planar Optical Waveguide

Multiplex biomarker quantitation is ideal for tracking the progression of a disease, but sensitive, specific, and quantitative multiplex biosensing remains challenging. We achieved total internal reflection with two lasers in a single planar optical waveguide by coupling 532 nm laser light into the diffraction grating of a waveguide and 635 nm laser light directly into the thin film of the same waveguide. We confirmed that the evanescent fields generated in the waveguide can excite two fluorescent dyes (Alexa Fluor 532 and Alexa Fluor 647) held to the surface of the waveguide through biotin-streptavidin chemistry. This sensing concept holds significant potential as a platform for multiplex biomarker detection.

47 OTHER INSTRUMENTATION↗
DOE OSTI2021

Laser-induced fluorescence thermometry of supercritical CO 2 flows inside a micro-channel

This work demonstrates a thermometric technique using laser-induced fluorescence (LIF) in supercritical carbon dioxide flows in a micro-channel. Rhodamine 6G was used as a temperature-sensitive fluorescent dye. The flow conditions were at a pressure of 7.9 MPa and temperature in the range of 23°–90°C. 2D spatial distributions and time-resolved temperature profiles were obtained at this high pressure. Measured LIF signals showed close relations to the temperatures obtained from resistance temperature detectors.

Park, Suhyeon↗
DOE OSTI2023

Metabolic multireactor: Practical considerations for using simple oxygen sensing optodes for high-throughput batch reactor metabolism experiments

We present a system for carrying out small batch reactor oxygen consumption experiments on water and sediment samples for environmental questions. In general, it provides several advantages that can help researchers achieve impactful experiments at relatively low costs and high data quality. In particular, it allows for multiple reactors to be operated and their oxygen concentrations to be measured simultaneously, providing high throughput and high time-resolution data, which can be advantageous. Most existing literature on similar small batch-reactor metabolic studies is limited to either only a few samples, or only a few time points per sample, which can restrict the ability for researchers to learn from their experiments. The oxygen sensing system is based very directly on the work of Larsen, et al. [2011], and similar oxygen sensing technology is widely used in the literature. As such we do not delve deeply into the specifics of the fluorescent dye sensing mechanism. Instead, we focus on practical considerations. We describe the construction and operation of the calibration and experimental systems, and answer many of the questions likely to come up when other researchers choose to build and operate a similar system themselves (questions we ourselves had when we first built the system). In this way, we hope to provide an approachable and easy to use research article that can help other researchers construct and operate a similar system that can be tailored to ask their own research questions, with a minimum of confusion and missteps along the way.

3D printing↗
DOE OSTI2024

Exposed Phosphatidylserine as a Biomarker for Clear Identification of Breast Cancer Brain Metastases in Mouse Models

Brain metastasis is the most common intracranial malignancy in adults. The prognosis is extremely poor, partly because most patients have more than one brain lesion, and the currently available therapies are nonspecific or inaccessible to those occult metastases due to an impermeable blood–tumor barrier (BTB). Phosphatidylserine (PS) is externalized on the surface of viable endothelial cells (ECs) in tumor blood vessels. In this study, we have applied a PS-targeting antibody to assess brain metastases in mouse models. Fluorescence microscopic imaging revealed that extensive PS exposure was found exclusively on vascular ECs of brain metastases. The highly sensitive and specific binding of the PS antibody enables individual metastases, even micrometastases containing an intact BTB, to be clearly delineated. Furthermore, the conjugation of the PS antibody with a fluorescence dye, IRDye 800CW, or a radioisotope, 125I, allowed the clear visualization of individual brain metastases by optical imaging and autoradiography, respectively. In conclusion, we demonstrated a novel strategy for targeting brain metastases based on our finding that abundant PS exposure occurs on blood vessels of brain metastases but not on normal brain, which may be useful for the development of imaging and targeted therapeutics for brain metastases.

Oncology↗
DOE OSTI2022

Crystal Structure of CYP3A4 Complexed with Fluorol Identifies the Substrate Access Channel as a High-Affinity Ligand Binding Site

Cytochrome P450 3A4 (CYP3A4) is a major human drug-metabolizing enzyme, notoriously known for its extreme substrate promiscuity, allosteric behavior, and implications in drug–drug interactions. Despite extensive investigations, the mechanism of ligand binding to CYP3A4 is not fully understood. We determined the crystal structure of CYP3A4 complexed with fluorol, a small fluorescent dye that can undergo hydroxylation. In the structure, fluorol associates to the substrate channel, well suited for the binding of planar polyaromatic molecules bearing polar groups, through which stabilizing H-bonds with the polar channel residues, such as Thr224 and Arg372, can be established. Mutagenesis, spectral, kinetic, and functional data confirmed the involvement but not strict requirement of Thr224 for the association of fluorol. Collectively, our data identify the substrate channel as a high-affinity ligand binding site and support the notion that hydrophobic ligands first dock to the nearby peripheral surface, before migrating to the channel and, subsequently, into the active site.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1971

Two new methods to increase the contrast of track-etch neutron radiographs

Methods for increasing the (optical density span) of radiographs were evaluated. In one method, fluorescent dye was deposited in the tracks of the radiograph. The radiograph was then examined under ultraviolet light. The second method was a crossed Polaroid filter technique. The radiograph was placed between the filters and then illuminated with a diffuse white-light source. An increase in the optical density span from .10 to .37 was obtained with the dye method. With the Polaroid method, the increase obtained was from .10 to 2.4.

Morley, J.↗
NASA NTRS1969

The Fraunhofer line discriminator: An airborne fluorometer

An experimental Fraunhofer Line Discriminator (FLD) can differentiate and measure solar-stimulated luminescence when viewed against a background of reflected light. Key elements are two extremely sensitive photomultipliers, two glass-spaced Fabry-Perot filters having a bandwidth less than 1 A, and an analog computer. As in conventional fluorometers, concentration of a fluorescent substance is measured by comparison with standards. Quantitative use is probably accurate only at low altitudes but detection of luminescent substances should be possible from any altitude. Applications of the present FLD include remote sensing of fluorescent dyes used in studies of current dynamics. The basic technique is applicable to detection of oil spills, monitoring of pollutants, and sensing over land areas.

Stoertz, G. E.↗
NASA NTRS1979

Laser anemometer measurements in a transonic axial flow compressor rotor

A laser anemometer system employing an efficient data acquisition technique was used to make measurements upstream, within, and downstream of the compressor rotor. A fluorescent dye technique allowed measurements within endwall boundary layers. Adjustable laser beam orientation minimized shadowed regions and enabled radial velocity measurements outside of the blade row. The flow phenomena investigated include flow variations from passage to passage, the rotor shock system, three-dimensional flows in the blade wake, and the development of the outer endwall boundary layer. Laser anemometer measurements are compared to a numerical solution of the streamfunction equations and to measurements made with conventional instrumentation.

Strazisar, A. J.↗
NASA NTRS1980

Laser anemometer measurements in a transonic axial flow compressor rotor

A laser anomometer system employing an efficient data acquisition technique has been used to make measurements upstream, within, and downstream of the compressor rotor. A fluorescent dye technique allowed measurements within endwall boundary layers. Adjustable laser beam orientation minimized shadowed regions and enabled radial velocity measurements outside of the blade row. The flow phenomena investigated include flow variations from passage to passage, the rotor shock system, three-dimensional flows in the blade wake, and the development of the outer endwall boundary layer. Laser anemometer measurements are compared to a numerical solution of the streamfunction equations and to measurements made with conventional instrumentation.

Strazisar, A. J.↗
NASA NTRS1982

Flow visualization of shock-boundary layer interaction

Two and three-dimensional shock-boundary layer interaction data were obtained from supersonic wind tunnel tests. These interactions are studied both with and without boundary layer bleed. The data verify computational fluid dynamic codes. Surface static pressure, pitot pressure, flow angularity, and bleed rates, are studied by flow visualization techniques. Surface oil flow using fluorescent dye and laser sheet using water droplets as the scattering material are used for flow visualization.

Hingst, W. R.↗
NASA NTRS1981

On the growth of turbulent regions in laminar boundary layers

Turbulent spots evolving in a laminar boundary layer on a nominally zero pressure gradient flat plate are investigated. The plate is towed through an 18 m water channel, using a carriage that rides on a continuously replenished oil film giving a vibrationless tow. Turbulent spots are initiated using a solenoid valve that ejects a small amount of fluid through a minute hole on the working surface. A novel visualization technique that utilizes fluorescent dye excited by a sheet of laser light is employed. Some new aspects of the growth and entrainment of turbulent spots, especially with regard to lateral growth, are inferred from the present experiments. To supplement the information on lateral spreading, a turbulent wedge created by placing a roughness element in the laminar boundary layer is also studied both visually and with probe measurements. The present results show that, in addition to entrainment, another mechanism is needed to explain the lateral growth characteristics of a turbulent region in a laminar boundary layer. This mechanism, termed growth by destabilization, appears to be a result of the turbulence destabilizing the unstable laminar boundary layer in its vicinity. To further understand the growth mechanisms, the turbulence in the spot is modulated using drag-reducing additives and salinity stratification.

Gad-El-hak, M.↗
NASA NTRS1985

Evidence that Resorption of Bone by Rat Peritoneal Macrophages Occurs in an Acidic Environment

Skeletal loss in space, like any form of osteoporosis, reflects a relative imbalance of the activities of cells resorbing (degrading) or forming bone. Consequently, prevention of weightlessness induced bone loss may theoretically be accomplished by (1) stimulating bone formation or (2) inhibiting bone resorption. This approach, however, requires fundamental understanding of the mechanisms by which cells form or degrade bone, information not yet at hand. An issue central to bone resorption is the pH at which resorption takes place. The pH dependent spectral shift of a fluorescent dye (fluorescein isothiocyanate) conjugated to bone matrix was used to determine the pH at the resorptive cell bone matrix interface. Devitalized rat bone was used as the substrate, and rat peritoneal macrophages were used as the bone resorbing cells. The results suggest that bone resorption is the result of generation of an acidic microenvironment at the cell matrix junction.

Blair, H. C.↗
NASA NTRS1985

Free-surface phenomena under low- and zero-gravity conditions

A free surface experiment using a liquid doped with a fluorescent dye under sheet illumination is summarized. The work includes the selection of a CCD camera for use during the design stages of the experiment as well as a preliminary demonstration of this technique in the production of a contour map of a liquid-liquid interface with better than 0.1 mm resolution. With a different data sampling and storage procedure, the image processing is reduced to a simple thresholding procedure which can be done in hardware.

Hesselink, L.↗
NASA NTRS1985

Water tunnel flow visualization using a laser

Laser systems for flow visualization in water tunnels (similar to the vapor screen technique used in wind tunnels) can provide two-dimensional cross-sectional views of complex flow fields. This parametric study documents the practical application of the laser-enhanced visualization (LEV) technique to water tunnel testing. Aspects of the study include laser power levels, flow seeding (using fluorescent dyes and embedded particulates), model preparation, and photographic techniques. The results of this study are discussed to provide potential users with basic information to aid in the design and setup of an LEV system.

Curry, R. E.↗
NASA NTRS1986

Quantitative determination of engine water ingestion

This paper describes a novel non-intrusive optical technique for determination of liquid mass flux in a droplet laden airstream. The technique was developed for quantitative determination of engine water ingestion resulting from heavy rain or wheel spray. Independent measurements of the liquid water content (LWC) of the droplet laden aircraft and of the droplet velocities were made at the simulated nacelle inlet plane for the liquid mass flux determination. The liquid water content was measured by illuminating and photographing the droplets contained within a thin slice of the flow field by means of a sheet of light from a pulsed YAG laser. A fluorescent dye introduced in the water greatly improved the droplet image definition. The droplet velocities were determined from double exposed photographs of the moving droplet field. The technique was initially applied to a steady spray generated in a wind tunnel. It was found that although the spray was initially steady, the aerodynamic breakup process was inherently unsteady. This resulted in a wide variation of the instantaneous liquid water content of the droplet laden airstream. The standard deviation of ten separate LWC measurements was 31 percent of the average. However, the liquid mass flux calculated from the average LWC and droplet velocities came within 10 percent of the known water ingestion rate.

Parikh, P.↗