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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Crystal Structures of Diaryl Hydrazone and Sulfone Stabilizers in Complex with an Amyloidogenic Light Chain Reveal an Alternate Ligand‐Binding Cavity

Abstract Stabilization of amyloidogenic immunoglobulin light chains (LCs) by binding of small molecule “kinetic stabilizers” is under development as a novel treatment for light chain amyloidosis. From a high‐throughput screen, we previously identified 16 full‐length (FL) LC stabilizers from five distinct chemotypes. We then obtained structural biological information on two classes of hits, coumarins and hydantoins, revealing that both chemotypes bind to a pocket at the V L −V L interface of the FL LC dimer. Here, we report crystal structures of three screening hits from two other chemotypes, diaryl hydrazones and sulfones, in complex with an amyloidogenic FL LC. While two of these hits bind to the previously identified pocket, one diaryl hydrazone binds to a different pocket bisected by the C 2 symmetry axis of the dimer. These data further expand on the FL LC stabilizer‐binding surface that could be used in design of more potent FL LC aggregation inhibitors.

Chemistry↗
DOE OSTI2020

Understanding the Effects of Vehicle Platoons on Crash Type and Severity

Crash type is an informative indicator to infer driving behaviors and conditions that cause a crash. For example, rear-end and side-swipe crashes are typically caused by improper vehicle interaction such as sudden lane-changing or speed control while hit-object crashes are likely the result of a single driver’s mistake. This study investigated the impact of vehicles travelling as a group (platoon) and its configuration (i.e., types of vehicles consisting of the platoon) on crash type and severity since the vehicles could affect each other when travelling in close proximity. This study applied Generalized Structure Equation Modeling (GSEM) to capture the complex relationships among the various crash factors such as traffic condition, driver characteristics, environmental conditions, and vehicle interaction to the crash attributes including type and severity. This study collected over 3 million individual vehicle data from 39 traffic count sites in California to estimate the vehicle interactions and driving behaviors. The microscopic traffic data are matched to 1417 crash reports. Results showed that vehicles traveling in platoons are associated with more rear-end and side-swipe crashes. Speed difference in the platoon had a positive effect on hit-object crashes if the platoon comprises vehicles of homogeneous type – either trucks or non-trucks. In addition, human factors such as age and gender were identified as significant influential factors in all type of crashes, however truck involvement particularly played an important role amongst side-swipe crashes. Crash severity was negatively affected by total flow, and rear-end crashes were more likely to be severe compared with hit-object crashes. Based on findings, this study suggests practical operational strategies to reduce traffic instability associated with platooned vehicle patterns. Understanding the high-risk factors for different crash types and severities would provide valuable insights for decision-makers and transportation engineers to develop targeted intervention strategies in consideration of road users and traffic conditions such as fleet mix and speed.

ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2024

EHR-BERT: A BERT-based model for effective anomaly detection in electronic health records

Objective: Physicians and clinicians rely on data contained in electronic health records (EHRs), as recorded by health information technology (HIT), to make informed decisions about their patients. The reliability of HIT systems in this regard is critical to patient safety. Consequently, better tools are needed to monitor the performance of HIT systems for potential hazards that could compromise the collected EHRs, which in turn could affect patient safety. In this paper, we propose a new framework for detecting anomalies in EHRs using sequence of clinical events. This new framework, EHR-Bidirectional Encoder Representations from Transformers (BERT), is motivated by the gaps in the existing deep-learning related methods, including high false negatives, sub-optimal accuracy, higher computational cost, and the risk of information loss. EHR-BERT is an innovative framework rooted in the BERT architecture, meticulously tailored to navigate the hurdles in the contemporary BERT method; thus, enhancing anomaly detection in EHRs for healthcare applications.Methods: The EHR-BERT framework was designed using the Sequential Masked Token Prediction (SMTP) method. This approach treats EHRs as natural language sentences and iteratively masks input tokens during both training and prediction stages. This method facilitates the learning of EHR sequence patterns in both directions for each event and identifies anomalies based on deviations from the normal execution models trained on EHR sequences.Results: Extensive experiments on large EHR datasets across various medical domains demonstrate that EHR-BERT markedly improves upon existing models. It significantly reduces the number of false positives and enhances the detection rate, thus bolstering the reliability of anomaly detection in electronic health records. This improvement is attributed to the model’s ability to minimize information loss and maximize data utilization effectively.Conclusion: EHR-BERT showcases immense potential in decreasing medical errors related to anomalous clinical events, positioning itself as an indispensable asset for enhancing patient safety and the overall standard of healthcare services. The framework effectively overcomes the drawbacks of earlier models, making it a promising solution for healthcare professionals to ensure the reliability and quality of health data.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
DOE OSTI2023

A neural network for beam background decomposition in Belle II at SuperKEKB

Here, we describe a neural network for predicting the background hit rate in the Belle II detector produced by the SuperKEKB electron-positron collider. The neural network, BGNet, learns to predict the individual contributions of different physical background sources, such as beam-gas scattering or continuous top-up injections into the collider, to Belle II sub-detector rates. The samples for learning are archived 1 Hz time series of diagnostic variables from the SuperKEKB collider subsystems and measured hit rates of Belle II used as regression targets. We test the learned model by predicting detector hit rates on archived data from different run periods not used during training. We show that a feature attribution method can help interpret the source of changes in the background level over time.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2023

Demonstration of sub-micron UCN position resolution using room-temperature CMOS sensor

High spatial resolution of ultracold neutron (UCN) measurement is of growing interest to UCN experiments such as UCN spectrometers, UCN polarimeters, quantum physics of UCNs, and quantum gravity. Here we utilize physics informed deep learning to enhance the experimental position resolution and to demonstrate sub-micron spatial resolutions for UCN position measurements obtained using a room-temperature CMOS sensor, extending our previous work that demonstrated a position uncertainty of 1.5 microns. We explore the use of the open-source software Allpix Squared to generate experiment-like synthetic hit images with ground-truth position labels. We use physics-informed deep learning by training a fully connected neural network (FCNN) to learn a mapping from input hit images to output hit position. The automated analysis for sub-micron position resolution in UCN detection combined with the fast data rates of current and next generation UCN sources will enable improved precision for future UCN research and applications.

10B nanometer thin film↗
DOE OSTI2019

Non-targeted discovery-based analysis for gas chromatography with mass spectrometry: A comparison of peak table, tile, and pixel-based Fisher ratio analysis

The ability to discover minute differences between samples or sample classes for gas chromatography coupled to mass spectrometry (GC-MS) can be a challenging endeavor, especially when those differences are not a priori . Fisher ratio (F-ratio) analysis is an apt technique to probe the differences between GC-MS chromatograms. F-ratio analysis is a supervised, non-targeted, discovery-based method that compares two different samples (or sample classes) to reduce the GC-MS dataset into a hit list composed of class distinguishing compounds. Three different F-ratio techniques, peak table, tile, and pixel-based were used to “discover” nine non-native analytes that were spiked into gasoline at four different nominal concentrations of 250, 85, 25, 5 parts-per-million (ppm). For the tile and pixel-based F-ratio calculations, a novel methodology is introduced to improve the sensitivity of the F-ratio calculations while reducing false positives. Furthermore, we use a combinatorial technique using null class comparisons, termed null distribution analysis, to determine a statistical F-ratio cutoff for analysis of the hit lists. The pixel-based algorithm was the most sensitive method and was able to “discover” all nine spiked analytes at a nominal concentration of 250 ppm albeit with one false positive interspersed towards the bottom of the hit list. The pixel-based software was also able to “discover” more of the spiked analytes at the lower concentrations with seven of the spiked analytes “discovered” at 85 ppm, four of the spiked analytes “discovered” at 25 ppm, and one analyte “discovered” at 5 ppm.

47 OTHER INSTRUMENTATION↗
DOE OSTI2022

The role of breakup and coalescence in fine-scale bubble-induced turbulence. I. Dynamics

We study the effect of bubble breakup and coalescence on fine-scale dynamics of bubbly turbulent flows using direct numerical simulations. We perform two different simulations of dilute bubbly flows of void fraction 0.5%: one with bubbles breaking up and coalescing and the other without these physical processes. The volume of the fluid method is used for simulating bubbles undergoing breakup and coalescence while the bubbles are treated as rigid spheres in the immersed boundary method simulation. The energy spectrum in both types of simulation, consistent with previous studies, exhibits a -3 slope. We follow a single infinitesimal fluid element as it evolves to understand velocity gradient dynamics using conditional mean trajectories. We note finite-time divergence when the fluid element evolves under the action of inertial and pressure dynamics. The inertial, pressure, and viscous velocity gradient dynamics, when considered individually, produce the same results for bubble-induced turbulence (BIT) as with the classical homogeneous isotropic turbulence (HIT). Yet when the overall velocity gradient dynamics is considered, BIT results in non-cyclic trajectories moving toward stable node and unstable saddle while classical HIT shows cyclic behavior in their trajectories that move toward the origin. Interestingly, both the volume of fluid and immersed boundary simulations produce similar results. Therefore, there are two main takeaways from this research. First, new velocity gradient models are needed for BIT as their velocity gradients behavior is entirely different from the HIT. Second, we can neglect the bubble topology, breakup, and coalescence while studying or modeling the fine-scale dynamics of BIT.

42 ENGINEERING↗
DOE OSTI2022

The role of breakup and coalescence in fine-scale bubble-induced turbulence. II. Kinematics

This second part of our research explores the kinematic aspect of fine-scale bubble-induced turbulence (BIT) to (i) present the effect of bubble breakup and coalescence and (ii) compare it against the universal kinematic fine-scale turbulence characteristics reported in the literature. To this end, we simulate a dilute bubbly system of 0.5% void fraction using two distinct numerical simulations. In the volume-of-fluid (VoF) simulation, bubbles undergo breakup and coalescence. In the immersed boundary method (IBM) simulation, however, they act as rigid spheres. We also perform a simulation of classical homogeneous isotropic turbulence (HIT). The first important outcome of this study is that BIT is radically different from HIT in terms of its kinematic fine-scale characteristics. In the vorticity-dominating regions, BIT exhibits a weak vortex stretching. This weak vortex stretching is due to (a) the intermediate strain-rate eigenvalues skewed weakly to positive and (b) the extensive strain-rate eigenvector aligning perpendicular to the vorticity vector. The BIT has, on average, not only a weak enstrophy production but also a weak strain production in strain-dominating regions. The weak strain production is due to (a) the presence of vortex stretching in highly strained fluid elements and (b) the absolute magnitude of compressive strain-rate eigenvalue being as close to the extensive strain-rate eigenvalue. Thus, none of the kinematic fine-scale HIT characteristics is noted for BIT. The second important conclusion is that bubble breakup and coalescence play little to no influence on the kinematics of fine-scale BIT as VoF and IBM simulations produce similar results.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2023

Graph Neural Network for Object Reconstruction in Liquid Argon Time Projection Chambers

The Exa.TrkX project presents a graph neural network (GNN) technique for low-level reconstruction of neutrino interactions in a Liquid Argon Time Projection Chamber (LArTPC). GNNs are still a relatively novel technique, and have shown great promise for similar reconstruction tasks in the Large Hadron Collider (LHC). Graphs describing particle interactions are formed by treating each detector hit as a node, with edges describing the relationships between hits. We utilise a multi-head attention message passing network which performs graph convolutions in order to label each node with a particle type.We present an updated variant of our GNN architecture, with several improvements. After testing the model on more realistic simulation with regions of unresponsive wires, the target was modified from edge classification to node classification in order to increase robustness. Removing edges as a classification target opens up a broader possibility space for edge-forming techniques; we explore the model’s performance across a variety of approaches, such as Delaunay triangulation, kNN, and radius-based methods. We also extend this model to the 3D context, sharing information between detector views. By using reconstructed 3D spacepoints to map detector hits from each wire plane, the model naively constructs 2D representations that are independent yet fully consistent.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2022

High performance FPGA embedded system for machine learning based tracking and trigger in sPhenix and EIC

We present a comprehensive end-to-end pipeline to classify triggers versus background events in this paper. This pipeline makes online decisions to select signal data and enables the intelligent trigger system for efficient data collection in the Data Acquisition System (DAQ) of the upcoming sPHENIX and future EIC (Electron-Ion Collider) experiments. Starting from the coordinates of pixel hits that are lightened by passing particles in the detector, the pipeline applies three-stage of event processing (hits clustering, track reconstruction, and trigger detection) and labels all processed events with the binary tag of trigger versus background events. The pipeline consists of deterministic algorithms such as clustering pixels to reduce event size, tracking reconstruction to predict candidate edges, and advanced graph neural network-based models for recognizing the entire jet pattern. In particular, we apply the message-passing graph neural network to predict links between hits and reconstruct tracks and a hierarchical pooling algorithm (DiffPool) to make the graph-level trigger detection. We obtain an impressive performance (≥70% accuracy) for trigger detection with only 3200 neuron weights in the end-to-end pipeline. We deploy the end-to-end pipeline into a field-programmable gate array (FPGA) and accelerate the three stages with speedup factors of 1152, 280, and 21, respectively.

Instruments & Instrumentation↗
DOE OSTI2024

ETROC1: the first full chain precision timing prototype ASIC for CMS MTD endcap timing layer upgrade

We present the design and characterization of the first fullchain precision timing prototype ASIC, named ETL Readout Chipversion 1 (ETROC1) for the CMS MTD endcap timing layer (ETL)upgrade. The ETL utilizes Low Gain Avalanche Diode (LGAD) sensors todetect charged particles, with the goal to achieve a time resolutionof 40–50 ps per hit, and 30–40 ps per track with hits from twodetector layers. The ETROC1 is composed of a 5 × 5 pixelarray and peripheral circuits. The pixel array includes a4 × 4 active pixel array with an H-tree shaped networkdelivering clock and charge injection signals. Each active pixel iscomposed of various components, including a bump pad, a chargeinjection circuit, a pre-amplifier, a discriminator, adigital-to-analog converter, and a time-to-digital converter. Thesecomponents play essential roles as the front-end link in processingLGAD signals and measuring timing-related information. Theperipheral circuits provide clock signals and readoutfunctionalities. The size of the ETROC1 chip is7 mm× 9 mm. ETROC1 has been fabricated in a 65 nmCMOS process, and extensively tested under stimuli of chargeinjection, infrared laser, and proton beam. The time resolution ofbump-bonded ETROC1 + LGAD chipsets reaches 42–46 ps per hit in thebeam test.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2021

Physics-informed machine learning of the Lagrangian dynamics of velocity gradient tensor

Reduced models describing the Lagrangian dynamics of the velocity gradient tensor (VGT) in homogeneous isotropic turbulence (HIT) are developed under the physics-informed machine learning (PIML) framework. We consider the VGT at both Kolmogorov scale and coarse-grained scale within the inertial range of HIT. Building reduced models requires resolving the pressure Hessian and subfilter contributions, which is accomplished by constructing them using the integrity bases and invariants of the VGT. The developed models can be expressed using the extended tensor basis neural network (TBNN) introduced by Ling et al. [J. Fluid Mech. 807, 155 (2016)]. Physical constraints, such as Galilean invariance, rotational invariance, and incompressibility condition, are thus embedded in the models explicitly. Our PIML models are trained on the Lagrangian data from a high-Reynolds number direct numerical simulation (DNS). To validate the results, we perform a comprehensive out-of-sample test. We observe that the PIML model provides an improved representation for the magnitude and orientation of the small-scale pressure Hessian contributions. Statistics of the flow, as indicated by the joint PDF of second and third invariants of the VGT, show good agreement with the “ground-truth” DNS data. A number of other important features describing the structure of HIT are reproduced by the model successfully. We have also identified challenges in modeling inertial range dynamics, which indicates that a richer modeling strategy is required. This helps us identify important directions for future research, in particular towards including inertial range geometry into the TBNN.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2021

Advanced Health Information Technology Analytic Framework and Application to Hazard Detection

Health Information Technology (HIT) aims to improve healthcare outcomes by organizing and analyzing various health-related data. With data accumulating at a staggering rate, the importance of real-time analytics has been increasing dramatically, shifting the focus of informatics from batch processing to streaming analytics. HIT is also facing unprecedented challenges in adapting to this new requirement and leveraging advanced IT technologies. This paper introduces a HIT data and compute platform that supports multi-granularity real-time analytics from heterogeneous data sources. The paper first identifies functional requirements and proposes a framework that satisfies the requirements using state-of-the-art big data technologies including Apache Kafka, Spark Structured Streaming Engine, and Delta Lake. To demonstrate its capability to support data analytics in multiple time granularities analytics, a statistical process control-based hazard detection algorithm has been implemented on top of the framework to detect unexpected hazards from order cancellation data of the Department of US Veterans Affairs (VA) in near real-time.

Kumar, Mohit↗
DOE OSTI2025

Anomaly Detection in Electronic Health Records Across Hospital Networks: Integrating Machine Learning With Graph Algorithms

In a large hospital system, a network of hospitals relies on electronic health records (EHRs) to make informed decisions regarding their patients in various clinical domains. Consequently, the dependability of the health information technology (HIT) systems responsible for collecting EHR data is of utmost importance for patient safety. Recently, novel methods and tools aimed at identifying anomalies in EHR data to bolster the reliability of HIT systems have been introduced. However, these existing methods and tools primarily concentrate on individual hospitals, which limits our understanding of system-wide anomalous events and their potential impact on patient safety across multiple hospitals. In this article, we introduce a new approach to detecting anomalies in EHR data within a network of hospitals. This is achieved by combining advanced machine learning techniques with graph algorithms to create a tool capable of swiftly identifying and responding to deviations. Our proposed approach employs a combination of five machine learning models, harnessing the unique strengths of each model to provide a more robust detection system. The detected anomalies are then represented as graphs, allowing us to recognize patterns across the hospital network. This aids in identifying anomalies that span multiple medical facilities, potentially indicating broader system-level risks. Extensive real-world testing of our approach demonstrated its ability to offer actionable insights compared to existing methods. Additionally, its scalable design ensures seamless integration into existing HIT infrastructures.

Niu, Haoran [Oak Ridge National Laboratory (ORNL),↗
DOE OSTI2022

Design Considerations for the Implementation of a High-Field-Side Transient CHI System on QUEST

Transient coaxial helicity injection (T-CHI), a method first developed on the small helicity injected torus (HIT-II) experiment and then validated on the much larger National Spherical Torus Experiment (NSTX) device, is a method to initiate an inductive-like tokamak plasma discharge without reliance on the central solenoid. A CHI discharge is initiated by driving current along magnetic flux that connects the inner and outer divertor plates on one end of the tokamak. To permit this, on both HIT-II and NSTX, toroidal ceramic insulators were used to electrically separate the inner and outer vessel components. The use of such large toroidal vacuum insulators may not be easy to implement in reactors. To address this issue, the Q-shu University experiments with steady-state spherical tokamak (ST) (QUEST) is developing a reactor-relevant CHI configuration in which one of the divertor plates is electrically insulated from the rest of the vessel. The first application of T-CHI on QUEST biased the CHI electrode to the outer vessel. While the CHI discharges could be easily generated, it was found that as the discharge filled the vessel, the separation distance between the injector magnetic flux footprints widened, a condition that is not favorable for the generation of closed flux surfaces. Biasing the electrode to the inner wall is a configuration similar to that used on NSTX and HIT-II, but initial testing in this configuration has proved to be challenging. The design described here overcomes the present limitation by locating the CHI electrode much closer to the CHI injector flux coil and using an NSTX-like gas injection manifold to enable high-field-side T-CHI startup on QUEST. Finally, the concepts described in this article should also benefit the future implementation of T-CHI systems in other tokamaks and spherical tokamaks.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2025

Forming Limits of Thin Ferritic Stainless Steel for Fuel Cell Application

To lower the cost of fuel cell bipolar plate (BPP), less expensive ferritic stainless steel (FSS) BPP substrate materials are investigated. A series of tensile tests and multistage microchannel-forming tests were conducted on 85-µm-thick ferritic stainless steel foils, 439L, 444, and Chromeshield® 22, to understand the effect of the forming temperatures, tooling geometry, and processes on their formability. Three microchannel-forming processes were conducted, which are 1-Hit (single-stage forming), 2-Hit (two-stage forming) with 50% preform, and 2-Hit with 80% preform. FLC o s at various microchannel-forming conditions were obtained to address the formability of the ferritic stainless steel foils under plane strain conditions. It has been found that the larger the microchannel radius, the better the formability, two-stage forming is superior to the single-stage process, and a larger draw percentage in preform (stage I) leads to a higher FLC o or better formability. It has also been found from tensile tests that the thermal effect (higher temperature) has a negative impact on the failure strains. A similar phenomenon was also observed through channel-forming tests conducted at room temperature, 100 °C, and 200 °C.

08 HYDROGEN↗
DOE OSTI2022

The Microbial Community and Functional Potential in the Midland Basin Reveal a Community Dominated by Both Thiosulfate and Sulfate-Reducing Microorganisms

The Permian Basin is the highest producing oil and gas reservoir in the United States. Hydrocarbon resources in this region are often accessed by unconventional extraction methods, including horizontal drilling and hydraulic fracturing. Despite the importance of the Permian Basin, there is no publicly available microbiological data from this region. We completed an analysis of Permian produced water samples to understand the dynamics present in hydraulically fractured wells in this region. We analyzed produced water samples taken from 10 wells in the Permian region of the Midland Basin using geochemical measurements, 16S rRNA gene sequencing, and metagenomic sequencing. Compared to other regions, we found that Permian Basin produced water was characterized by higher sulfate and lower total dissolved solids (TDS) concentrations, with a median of 1,110 mg/L and 107,000 mg/L. Additionally, geochemical measurements revealed the presence of frac hits, or interwell communication events where an established well is affected by the pumping of fracturing fluid into a new well. The occurrence of frac hits was supported by correlations between the microbiome and the geochemical parameters. Our 16S rRNA gene sequencing identified a produced water microbiome characterized by anaerobic, halophilic, and sulfur reducing taxa. Interestingly, sulfate and thiosulfate reducing taxa including Halanaerobium, Orenia, Marinobacter, and Desulfohalobium were the most prevalent microbiota in most wells. We further investigated the metabolic potential of microorganisms in the Permian Basin with metagenomic sequencing. We recovered 15 metagenome assembled genomes (MAGs) from seven different samples representing 6 unique well sites. These MAGs corroborated the high presence of sulfate and thiosulfate reducing genes across all wells, especially from key taxa including Halanaerobium and Orenia. The observed microbiome composition and metabolic capabilities in conjunction with the high sulfate concentrations demonstrate a high potential for hydrogen sulfide production in the Permian Basin. Additionally, evidence of frac hits suggests the possibility for the exchange of microbial cells and/or genetic information between wells. This exchange would increase the likelihood of hydrogen sulfide production and has implications for the oil and gas industry.

16S RNA↗
DOE OSTI2021

Python HITMIX

SAND2024-10158O Python HITMIX is a software package for computing hitting time moments of vertices in a graph. Hitting time moments can be used to rank the strengths of relationships between vertices in a graph. Examples are provided for computing and using hitting time moments on generic graphs and similarity graphs arising from the analysis of text documents in information retrieval applications. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Dunlavy, Daniel↗