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At least 91 records · Page 5

The cosmological evolution of self-interacting dark matter

We study the evolution of cosmological perturbations in dark-matter models with elastic and velocity-independent self interactions. Such interactions are imprinted in the matter-power spectrum as dark acoustic oscillations, which can be experimentally explored to determine the strength of the self scatterings. Models with self interactions have similarities to warm dark matter, as they lead to suppression of power on small scales when the dark-matter velocity dispersion is sizable. Nonetheless, both the physical origin and the extent of the suppression differ for self-interacting dark matter from conventional warm dark matter, with a dark sound horizon controlling the reduction of power in the former case, and a free-streaming length in the latter. We thoroughly analyze these differences by performing computations of the linear power spectrum using a newly developed Boltzmann code. We find that while current Lyman-α data disfavor conventional warm dark matter with a mass less than 5.3 keV, when self interactions are included at their maximal value consistent with bounds from the Bullet Cluster, the limits are relaxed to 4.4 keV. Lastly, we make use of our analysis to set novel bounds on light scalar singlet dark matter.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Divergences in hydraulic conductance and anatomical traits of stems and leaves in three temperate tree species coping with drought, N addition and their interactions

Drought and N addition have been shown to affect tree hydraulic traits, but few studies have been made on their interactions across species with different wood types or leaf forms. We examined the responses of hydraulic conductance and xylem anatomical traits of Quercus mongolica (ring-porous with simple-leaves), Fraxinus mandshurica (ring-porous with compound-leaves), and Tilia amurensis (diffuse-porous with simple-leaves) to drought, N addition and their interactions. Drought stress decreased current-year xylem-specific conductivity in stems (Ksx) and leaf hydraulic conductance (Kleaf), but N addition affected Ksx and Kleaf differently among species and watering regimes. These divergent effects were associated with different responses of anatomical traits and leaf forms. Higher mean vessel diameter in stems (Dstem) and lower vessel density in leaves (VDvein) were observed with N addition. The three-way interactive effects of drought, N addition and tree species were significant for most values of anatomical traits. These results were also reflected in large differences in vessel diameter and density among species with different wood types or leaf forms. The two-way interactive effects of drought and N addition were significant on Kleaf and predawn water potential (?pd), but not Ksx, indicating that leaves were more sensitive than stems to a combination of drought stress and N addition. Our results provide mechanistic insight into the variable responses of xylem water transport to the interactions of drought and N availability.

Hydraulic conductance, hydraulic architecture, N f↗

Special Issue: Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics

Microbial communities are networks of species, the interaction structure of which dynamically reorganizes in a varying environment. Even in a static condition, community dynamics are often difficult to predict due to highly nonlinear interspecies interactions. Understanding fundamental principles of microbial interactions is therefore key for predicting and harnessing community function and properties. As extensively reviewed previously, mathematical models and computational methods that can predictively link interactions to community behaviors are indispensable tools for achieving this goal. This Special Issue of Processes collects eleven papers from lead scientists and researchers active in the area under the topic of “Microbial Community Modeling: Prediction of Microbial Interactions and Community Dynamics.” The collected papers cover various topics of interest: 1) two review/opinion papers discussing recent advances in biofilm modeling and specific issues for successful collaboration between experimentalists and theorists, 2) one paper on the dynamics of complex environmental communities, 3) six papers dealing with fundamental aspects of microbial interactions and stability in model communities, and 4) two papers on the development and utilization of microbial consortia for biotechnology applications.

Song, Hyun-Seob (ORCID:0000000221546358)↗

Assessing regional scale predictions of aerosols, marine stratocumulus, and their interactions during VOCALS-REx using WRF-Chem

This study assesses the ability of the recent chemistry version (v3.3) of the Weather Research and Forecasting (WRF-Chem) model to simulate boundary layer structure, aerosols, stratocumulus clouds, and energy fluxes over the Southeast Pacific Ocean. Measurements from the VAMOS Ocean-Cloud-Atmosphere-Land Study Regional Experiment (VOCALS-REx) and satellite retrievals (i.e., products from the MODerate resolution Imaging Spectroradiometer (MODIS), Clouds and Earth's Radiant Energy System (CERES), and GOES-10) are used for this assessment. The Morrison double-moment microphysics scheme is newly coupled with interactive aerosols in the model. The 31-day (15 October-16 November 2008) WRF-Chem simulation with aerosol-cloud interactions (AERO hereafter) is also compared to a simulation (MET hereafter) with fixed cloud droplet number concentrations in the microphysics scheme and simplified cloud and aerosol treatments in the radiation scheme. The well-simulated aerosol quantities (aerosol number, mass composition and optical properties), and the inclusion of full aerosol-cloud couplings lead to significant improvements in many features of the simulated stratocumulus clouds: cloud optical properties and microphysical properties such as cloud top effective radius, cloud water path, and cloud optical thickness. In addition to accounting for the aerosol direct and semi-direct effects, these improvements feed back to the simulation of boundary-layer characteristics and energy budgets. Particularly, inclusion of interactive aerosols in AERO strengthens the temperature and humidity gradients within the capping inversion layer and lowers the marine boundary layer (MBL) depth by 130 m from that of the MET simulation. These differences are associated with weaker entrainment and stronger mean subsidence at the top of the MBL in AERO. Mean top-of-atmosphere outgoing shortwave fluxes, surface latent heat, and surface downwelling longwave fluxes are in better agreement with observations in AERO, compared to the MET simulation. Nevertheless, biases in some of the simulated meteorological quantities (e.g., MBL temperature and humidity) and aerosol quantities (e.g., underestimations of accumulation mode aerosol number) might affect simulated stratocumulus and energy fluxes over the Southeastern Pacific, and require further investigation. The well-simulated timing and outflow patterns of polluted and clean episodes demonstrate the model's ability to capture daily/synoptic scale variations of aerosol and cloud properties, and suggest that the model is suitable for studying atmospheric processes associated with pollution outflow over the ocean. The overall performance of the regional model in simulating mesoscale clouds and boundary layer properties is encouraging and suggests that reproducing gradients of aerosol and cloud droplet concentrations and coupling cloud-aerosol-radiation processes are important when simulating marine stratocumulus over the Southeast Pacific.

54 ENVIRONMENTAL SCIENCES↗

Interaction–Deletion: A Composite Energy Method for the Optimization of Molecular Systems Selectively Removing Specific Nonbonded Interactions

The complex interactions between different portions of a large molecule can be challenging to analyze through traditional electronic structure calculations. Moreover, standard methods cannot easily quantify the physical consequences of individual pairwise interactions inside a molecule. By creating a set of molecular fragments, we propose a composite energy method to explore changes in a molecule caused by removing selected nonbonded interactions between different molecular portions. Energies and forces are easily obtained with this composite approach, allowing geometry optimizations that lead to chemically meaningful structures that describe how the omitted interactions contribute to changes in the local geometrical minima. We illustrate the application of our new hybrid scheme by computing the influence of intramolecular hydrogen-bonding interactions in two small molecules: 1,6-(tG + G + TG + G + g – )-hexanediol and a cyclic analogue, cis-1,4-cyclohexanediol. The resulting structural and energetic changes are interpreted to yield key physical insights and quantify concepts such as “preparation energy” or “reorganization energy”. We demonstrate that the composite method can be extended to larger molecular systems by showing its application on a Si(100) surface model containing interactions between dissociated ammonia molecules on adjacent surface dimers. The scheme’s efficacy is also tested by applying it to systems having multiple intramolecular interactions, viz., 310-polyglycine and H+GPGG. Furthermore, the cooperative nature of intramolecular hydrogen bonds is explored by using interaction–deletion in 2-nitrobenzene-1,3-diol.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A coarse-graining approach for molecular simulation that retains the dynamics of the all-atom reference system by implementing hydrodynamic interactions

We report on a new approach for deriving coarse-grained intermolecular forces that retains the frictional contribution that is often discarded by conventional coarse-graining methods. The approach is tested for water and an aqueous glucose solution, and the results from the new implementation for coarse-grained molecular dynamics simulation show remarkable agreement with the dynamics obtained from reference all-atom simulations. The agreement between the structural properties observed in the coarse-grained and all-atom simulations is also preserved. We discuss how this approach may be applied broadly to any existing coarse-graining method where the coarse-grained models are rigorously derived from all-atom reference systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Weak competing interactions control assembly of strongly bonded TCNQ ionic acceptor molecules on silver surfaces

The energy scales of interactions that control molecular adsorption and assembly on surfaces can vary by several orders of magnitude, yet the importance of each contributing interaction is not apparent a priori. Tetracyanoquinodimethane (TCNQ) is an archetypal electron acceptor molecule and it is a key component of organic metals. On metal surfaces, this molecule also acts as an electron acceptor, producing negatively charged adsorbates. It is therefore rather intriguing to observe attractive molecular interactions in this system that were reported previously for copper and silver surfaces. In this paper, our experiments compared TCNQ adsorption on noble metal surfaces of Ag(100) and Ag(111). In both cases we found net attractive interactions down to the lowest coverage. However, the morphology of the assemblies was strikingly different, with two-dimensional islands on Ag(100) and one-dimensional chains on Ag(111) surfaces. This observation suggests that the registry effect governed by the molecular interaction with the underlying lattice potential is critical in determining the dimensionality of the molecular assembly. Using first-principles density functional calculations with a van der Waals correction scheme, we revealed that the strengths of major interactions (i.e., lattice potential corrugation, intermolecular attraction, and charge-transfer-induced repulsion) are all similar in energy. The van der Waals interactions, in particular, almost double the strength of attractive interactions, making the intermolecular potential comparable in strength to the diffusion potential and promoting self-assembly. However, it is the anisotropy of local intermolecular interactions that is primarily responsible for the difference in the topology of the molecular islands on Ag(100) and Ag(111) surfaces. Finally, we anticipate that the intermolecular potential will become more attractive and dominant over the diffusion potential with increasing molecular size, providing new design strategies for the structure and charge transfer within molecular layers.

36 MATERIALS SCIENCE↗

Conceptual Design of the Interaction Region Magnets for Future Electron-Ion Collider at Jefferson Lab

The Jefferson Lab Electron Ion Collider (JLEIC) is a proposed new machine for nuclear physics research. As proposed, it will deliver between 15 and 65 GeV center of mass energy collisions between electrons and nuclei. It uses the existing CEBAF accelerator as a full energy injector to deliver 3 to 10 GeV electrons into a new electron collider ring. An all new ion accelerator and collider complex will deliver up to 100 GeV protons, or 40 GeV/nucleon ions. The machine will have luminosity goals of above 1033 cm-2 sec-1 in the whole energy range with a maximum of a few 1034 cm-2 sec-1. The two collider rings use a unique figure-of eight layout to deliver a high degree of polarization in both beams. The machine will include room for two interaction regions with only one initially installed. The crossing angle in the primary interaction region will be 50 mrad. The whole detector region including forward detection covers about 80 meters of the JLEIC complex. This paper will describe the requirements and preliminary designs for both the ion and electron beam magnets in the most complex 32 m long interaction region (IR) around the interaction point (IP). The interaction region has over thirty-seven superconducting magnets operating at 4.5K; these include dipoles, quadrupoles, skew-quadrupoles, solenoids, horizontal and vertical correctors and higher order multipole magnets. The paper will also discuss the electromagnetic interaction between these magnets.

Wiseman, Mark (ORCID:0000000179110306)↗

Impacts of Oxo Interactions on Np(V) Crown Ether Complexes

Intermolecular interactions between the oxo group of an actinyl cation and other metal cations (i.e., cation–cation interactions) are dependent on the strength of the actinyl bond. These cation–cation interactions are prominently observed for the neptunyl cation [Np(V)O 2] + and are sufficiently stable enough to explore using a variety of chemical techniques. Here, we investigate these intermolecular interactions in the neptunyl 18-crown-6 system, because this macrocyclic ligand provides both stable coordination and the proper sterics to engage the oxo group in bonding with both low-valent metal cations and neighboring neptunyl units. We report the structural and spectroscopic characterization of five neptunyl, [Np(V,VI)O 2 ] +,2+ , compounds: Np1a ([NpO 2 (18-crown-6)]ClO 4 ), Np1b ([NpO 2 (18-crown-6)]AuCl 4 ), Na–Np ([Np(V)O 2 (18-crown-6)(Na(H 2 O)(18-crown-6)][Np(VI)O 2 Cl 4 ], Np–Np ([NpO 2 (18-crown-6)](NpO 2 Cl 2 NO 3 )], and Np–Cl (NpO 2 Cl(H 2 O) 1.75 ). Each of these compounds were prepared from the ambient reactions of Np(V) in HX (where X = Cl, NO 3 ) with the 18-crown-6 ether molecule. Structural information obtained from single-crystal X-ray diffraction data was paired with solid-state and solution Raman spectroscopy to provide information on the interaction of the neptunyl oxo atom with neighboring cations. Neptunyl (Np=O) bond lengths are not perturbed upon interaction with the Na + cation (Na–Np), but elongation is observed upon formation of a neptunyl–neptunyl interaction (Np–Np). This is also the first structurally characterized isolated, molecular complex that contains a simple T-shaped neptunyl–neptunyl interaction. Raman spectroscopy indicates little perturbation to the neptunyl bond until the formation of the neptunyl–neptunyl motif, which also results in activation of the ν 3 asymmetric stretch. Additional spectroscopic studies indicated that the neptunyl 18-crown-6 inclusion complexes form in solution and persist in the presence of other low-valence cations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Biofilm Interaction Mapping and Analysis (BIMA) of Interspecific Interactions in Pseudomonas Co-culture Biofilms

Pseudomonas species are ubiquitous in nature and include numerous medically, agriculturally and technologically beneficial strains of which the interspecific interactions are of great interest for biotechnologies. Specifically, co-cultures containing Pseudomonas stutzeri have been used for bioremediation, biocontrol, aquaculture management and wastewater denitrification. Furthermore, the use of P. stutzeri biofilms, in combination with consortia-based approaches, may offer advantages for these processes. Understanding the interspecific interaction within biofilm co-cultures or consortia provides a means for improvement of current technologies. However, the investigation of biofilm-based consortia has been limited. We present an adaptable and scalable method for the analysis of macroscopic interactions (colony morphology, inhibition, and invasion) between colony-forming bacterial strains using an automated printing method followed by analysis of the genes and metabolites involved in the interactions. Using Biofilm Interaction Mapping and Analysis (BIMA), these interactions were investigated between P. stutzeri strain RCH2, a denitrifier isolated from chromium (VI) contaminated soil, and 13 other species of pseudomonas isolated from non-contaminated soil. One interaction partner, Pseudomonas fluorescens N1B4 was selected for mutant fitness profiling of a DNA-barcoded mutant library; with this approach four genes of importance were identified and the effects on interactions were evaluated with deletion mutants and mass spectrometry based metabolomics.

59 BASIC BIOLOGICAL SCIENCES↗

AGAINST THE WIND: RADIO LIGHT CURVES OF TYPE IA SUPERNOVAE INTERACTING WITH LOW-DENSITY CIRCUMSTELLAR SHELLS

For decades a wide variety of observations spanning the radio through optical and on to the X-ray have attempted to uncover signs of type Ia supernovae (SNe Ia) interacting with a circumstellar medium (CSM). The goal of these studies is to constrain the nature of the hypothesized SN Ia mass-donor companion. A continuous CSM is typically assumed when interpreting observations of interaction. However, while such models have been successfully applied to core-collapse SNe, the assumption of continuity may not be accurate for SNe Ia, because shells of CSM could be formed by pre-supernova eruptions (novae). In this work, we model the interaction of SNe with a spherical, low-density, finite-extent CSM and create a suite of synthetic radio synchrotron light curves. We find that CSM shells produce sharply peaked light curves. We also identify a fiducial set of models that obey a common evolution and can be used to generate radio light curves for an interaction with an arbitrary shell. The relations obeyed by the fiducial models can be used to deduce CSM properties from radio observations; we demonstrate this by applying them to the nondetections of SN 2011fe and SN 2014J. Finally, we explore a multiple shell CSM configuration and describe its more complicated dynamics and the resultant radio light curves.

79 ASTRONOMY AND ASTROPHYSICS↗

pH-Dependent Interactions between Keggin Heteropolyanions in Dilute Solutions: pH-Dependent Interactions between Keggin Heteropolyanions in Dilute Solutions

Previously, Keggin phosphotungstate heteropolyanions (HPA), PW 12 O 40 3– , are known to interact via short-range attraction and long-range repulsion (SALR) at moderate and high solution concentrations and low-pH (pH = 1). These interactions were identified through the observation of structure factor peaks in small-angle X-ray scattering (SAXS) data reported previously (J. Phys. Chem. C 2016, 120, 1317). Here we describe the interactions between the same heteropolyanions with extremely low concentrations at low (pH = 0) and high pH (pH = 4.7) conditions. The solution chemistry of Keggin heteropolyanions at these two pH values offers a unique way to change the charge of the cluster anions without changing the structure (from the perspective of SAXS) and, at the same time, changing the hydrogen bonding interactions. The structure factors obtained from concentration dependent SAXS data reveal that the change in pH changes the nature of SALR interactions, consistent with the presence of the plenary PW 12 O 40 3– anion at pH = 0 and the monovacant lacunary PW 11 O 39 7– anion at pH = 4.7. At the low pH condition, the attractive interactions dominate to provide a peak near Q = 0 Å –1 momentum transfer in the structure factors, whereas at pH = 4.7 the repulsive interactions dominate, thereby eliminating the peak near Q = 0 Å –1 . The experimental findings presented here are in agreement with the recent liquid state theory and computer simulation predictions on SALR interactions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A combined theoretical-experimental study of interactions between vanadium ions and Nafion membrane in all-vanadium redox flow batteries

Vanadium redox flow batteries (VRFBs) are a promising solution for large-scale energy storage, but a number of problems still impede the deployment of long-lifetime VRFBs. One important aspect of efficient operation of VRFBs is understanding interactions between vanadium species and the membrane. Herein, we investigate the interactions between all four vanadium cations and Nafion membrane by a combination of infrared (IR) spectroscopy and density-functional-theory (DFT)-based static and molecular dynamics simulations. It is observed that vanadium species primarily lead to changes in the IR spectrum of Nafion in the SO 3 - spectral region which is attributed to the interaction between vanadium species and the SO 3 - exchange sites. DFT calculations of vanadium - Nafion complexes in the gas phase show that it is thermodynamically favorable for all vanadium cations to bind to SO 3 - via a contact pair mechanism. Car-Parrinello molecular dynamics-based metadynamics simulations of cation-Nafion systems in aqueous solution suggest that and species coordinate spontaneously to SO 3 - , which is not the case for VO 2+ and VO 2 + . The interaction behavior of the uncycled membrane determined in this study is used to explain the experimentally observed changes in the vibrational spectra, and is discussed in light of previous results on device-cycled membranes.

00-01↗

Impact of Weak Agostic Interactions in Nickel Electrocatalysts for Hydrogen Oxidation

To understand how H2 binding and oxidation is influenced by [Ni(PR2NR'2)2]2+ PR2NR'2 catalysts with H2 binding energies close to thermoneutral, two [Ni(PPh2NR'2)2]2+ (R = Me or C14H29) complexes with phenyl substituents on phosphorous and varying alkyl chain lengths on the pendant amine were studied. In the solid state, [Ni(PPh2NMe2)2]2+ exhibits an anagostic interaction between the Ni(II) center and the a-CH3 of the pendant amine, and DFT and variable-temperature 31P NMR experiments suggest than the anagostic interaction persists in solution. The equilibrium constants for H2 addition to these complexes was measured by 31P NMR spectroscopy, affording free energies of H2 addition (?G°H2) of –0.8 kcal mol–1 in benzonitrile and –1.6 to –2.3 kcal mol–1 in THF. The anagostic interaction contributes to the low driving force for H2 binding by stabilizing the four-coordinate Ni(II) species prior to binding of H2. The pseudo-first order rate constants for H2 addition at 1 atm were measured by variable scan rate cyclic voltammetry, and were found to be similar for both complexes, less than 0.2 s–1 in benzonitrile and 3 –6 s–1 in THF. In the presence of exogenous base and H2 , turnover frequencies of electrocatalytic H2 oxidation were measured to be less than 0.2 s–1 in benzonitrile and 4 –9 s–1 in THF. These complexes are slower electrocatalysts for H2 oxidation than previously studied [Ni(PR2NR'2)2]2+ complexes due to a competition between H2 binding and formation of the anagostic interaction. However, the decrease in catalytic rate is accompanied by a beneficial 130 mV decrease in overpotential. This research was supported as part of the Center for Molecular Electrocatalysis, an Energy Frontier Research Center funded by the U.S. Department of Energy (DOE), Office of Science, Office of Basic Energy Sciences. Computational resources were provided at the National Energy Research Scientific Computing Center (NERSC) at Lawrence Berkeley National Laboratory. Mass spectrometry experiments were performed in the William R. Wiley Environmental Molecular Sciences Laboratory, a DOE national scientific user facility sponsored by the DOE’s Office of Biological and Environmental Research and located and the Pacific Northwest National Laboratory (PNNL). The authors thank Dr. Rosalie Chu for mass spectroscopy analysis. PNNL is operated by Battelle for DOE.

Klug, Christina↗

Measurement of the multi-TeV neutrino interaction cross-section with IceCube using Earth absorption

We report that neutrinos interact only very weakly, so they are extremely penetrating. The theoretical neutrino-nucleon interaction cross-section, however, increases with increasing neutrino energy, and neutrinos with energies above 40 teraelectronvolts (TeV) are expected to be absorbed as they pass through the Earth. Experimentally, the cross-section has been determined only at the relatively low energies (below 0.4 TeV) that are available at neutrino beams from accelerators. Here we report a measurement of neutrino absorption by the Earth using a sample of 10,784 energetic upward-going neutrino-induced muons. The flux of high-energy neutrinos transiting long paths through the Earth is attenuated compared to a reference sample that follows shorter trajectories. Using a fit to the two-dimensional distribution of muon energy and zenith angle, we determine the neutrino-nucleon interaction cross-section for neutrino energies 6.3-980 TeV, more than an order of magnitude higher than previous measurements. The measured cross-section is about 1.3 times the prediction of the standard model, consistent with the expectations for charged- and neutral-current interactions. We do not observe a large increase in the cross-section with neutrino energy, in contrast with the predictions of some theoretical models, including those invoking more compact spatial dimensions or the production of leptoquarks. This cross-section measurement can be used to set limits on the existence of some hypothesized beyond-standard-model particles, including leptoquarks.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗