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A Catchment-Based Approach to Modeling Land Surface Processes in a GCM: Parameter Estimation and Model Demonstration - Part 2

The viability of a new catchment-based land surface model (LSM) developed for use with general circulation models is demonstrated. First, simple empirical functions -- tractable enough for operational use in the LSM -- are established that faithfully capture the control of topography on the subgrid variability of soil moisture and the surface water budget, as predicted by theory. Next, the full LSM is evaluated offline. Using forcing and validation datasets developed for PILPS Phase 2c, the minimally calibrated model is shown to reproduce observed evaporation and runoff fluxes successfully in the Red-Arkansas River Basin. A complementary idealized study that employs the range of topographic variability seen over North America demonstrates that the simulated surface water budget does vary strongly with topography, which can, by itself, induce variations in annual evaporation as high as 20%.

Ducharne, Agnes↗

Characterizing uncertainty in Community Land Model version 5 hydrological applications in the United States

Abstract Land surface models such as the Community Land Model Version 5 (CLM5) are essential tools for simulating the behavior of the terrestrial system. Despite the extensive application of CLM5, limited attention has been paid to the underlying uncertainties associated with its hydrological parameters and how these uncertainties affect water resource applications. To address this long-standing issue, we use five meteorological datasets to conduct a comprehensive hydrological parameter uncertainty characterization of CLM5 over the hydroclimatic gradients of the conterminous United States. Key datasets produced from the uncertainty characterization experiment include: a benchmark dataset of CLM5 default hydrological performance, parameter sensitivities for 28 hydrological metrics, and large-ensemble outputs for CLM5 hydrological predictions. The presented datasets will assist CLM5 calibration and support broad applications, such as evaluating drought and flood vulnerabilities. The datasets can be used to identify the hydroclimatological conditions under which parametric uncertainties demonstrate substantial effects on hydrological predictions and clarify where further investigations are needed to understand how hydrological prediction uncertainties interact with other Earth system processes.

54 ENVIRONMENTAL SCIENCES↗

Implementing and Evaluating Variable Soil Thickness in the Community Land Model, Version 4.5 (CLM4.5)

One of the recognized weaknesses of land surface models as used in weather and climate models is the assumption of constant soil thickness because of the lack of global estimates of bedrock depth. As such, using a 30-arc-s global dataset for the thickness of relatively porous, unconsolidated sediments over bedrock, spatial variation in soil thickness is included here in version 4.5 of the Community Land Model (CLM4.5). The number of soil layers for each grid cell is determined from the average soil depth for each 0.9° latitude × 1.25° longitude grid cell. The greatest changes in the simulation with variable soil thickness are to baseflow, with the annual minimum generally occurring earlier. Smaller changes are seen in latent heat flux and surface runoff primarily as a result of an increase in the annual cycle amplitude. These changes are related to soil moisture changes that are most substantial in locations with shallow bedrock. Total water storage (TWS) anomalies are not strongly affected over most river basins since most basins contain mostly deep soils, but TWS anomalies are substantially different for a river basin with more mountainous terrain. Additionally, the annual cycle in soil temperature is partially affected by including realistic soil thicknesses resulting from changes in the vertical profile of heat capacity and thermal conductivity. However, the largest changes to soil temperature are introduced by the soil moisture changes in the variable soil thickness simulation. This implementation of variable soil thickness represents a step forward in land surface model development.

54 ENVIRONMENTAL SCIENCES↗

Improving Representation of Deforestation Effects on Evapotranspiration in the E3SM Land Model

Abstract Evapotranspiration (ET) plays an important role in land‐atmosphere coupling of energy, water, and carbon cycles. Following deforestation, ET is typically observed to decrease substantially as a consequence of decreases in leaf area and roots and increases in runoff. Changes in ET (latent heat flux) revise the surface energy and water budgets, which further affects large‐scale atmospheric dynamics and feeds back positively or negatively to long‐term forest sustainability. In this study, we used observations from a recent synthesis of 29 pairs of adjacent intact and deforested FLUXNET sites to improve model parameterization of stomatal characteristics, photosynthesis, and soil water dynamics in version 1 of the Energy Exascale Earth System Model (E3SM) Land Model (ELMv1). We found that default ELMv1 predicts an increase in ET after deforestation, likely leading to incorrect estimates of the effects of deforestation on land‐atmosphere coupling. The calibrated model accurately represented the FLUXNET observed deforestation effects on ET. Importantly, the search for global optimal parameters converged at values consistent with recent observational syntheses, confirming the reliability of the calibrated physical parameters. Applying this improved model parameterization to the globe scale reduced the bias of annual ET simulation by up to ~600 mm/year. Analysis on the roles of parameters suggested that future model development to improve ET simulation should focus on stomatal resistance and soil water‐related parameterizations. Finally, our predicted differences in seasonal ET changes from deforestation are large enough to substantially affect land‐atmosphere coupling and should be considered in such studies.

54 ENVIRONMENTAL SCIENCES↗

Improving maize growth processes in the community land model: Implementation and evaluation

Earth system models (ESMs) are essential tools to study the impacts of historical and future climate on regional and global food production, as well as to assess the effectiveness of possible adaptations and their potential feedback to climate. Several current ESMs have the capabilities to simulate crop growth. However, some critical crop growth processes (e.g. flowering and other reproductive processes) and their responses to environmental extremes (e.g. heat stress) are not yet represented in most of these models. In this paper, an improved maize growth model was implemented in the Community Land Model version 4.5 (CLM4.5) by modifying the maize planting scheme, incorporating the phenology scheme adopted from the APSIM model (Agricultural Production Systems sIMulator), adding a new carbon allocation scheme into CLM4.5, and improving the estimation of canopy structure parameters including leaf area index (LAI) and canopy height. Unique features of the new model (CLM-APSIM) include more detailed phenology stages, an explicit implementation of the impacts of various abiotic environmental stresses (including nitrogen, water, temperature and heat stresses) on maize phenology and carbon allocation, as well as an explicit simulation of grain number. Evaluation of results at 7 AmeriFlux sites located in the US Corn Belt show that the CLM-APSIM model performs better than the original CLM4.5 in simulating phenology (LAI and canopy height), surface fluxes including gross primary production (GPP), net ecosystem exchange (NEE), latent heat (LH), and sensible heat (SH), and especially in simulating the biomass partition and maize yield. The CLM-APSIM model corrects a serious deficiency in CLM4.5-related to CLM4.5’s underestimation of aboveground biomass (i.e. overestimation of belowground biomass) and overestimation of Harvest Index, which lead to a reasonable yield estimation with wrong mechanisms. Moreover, 13-year simulation results from 2001 to 2013 at the three Mead sites (US-Ne1, Ne2 and Ne3) show that the CLM-APSIM model can more accurately reproduce maize yield responses to growing season climate (temperature and precipitation) than the original CLM4.5 when benchmarked with the site-based observations and USDA county-level survey statistics. The CLM-APSIM model is thus more suitable than its predecessor models in terms of simulating abiotic environmental stresses on maize yield. This new model provides an improved tool to attribute maize yield change to various processes under historical and future climate, as well as to assess and design effective climate adaptation strategies for sustainable agricultural production.

Peng, Bin↗

Seasonal Soil Freeze/Thaw Variability Across North America via Ensemble Land Surface Modeling

Land surface modeling provides the opportunity to investigate winter soil processes such as soil freezing and thawing over large domains. However, the variability in simulated winter soil characteristics among land surface models and forcing datasets is not well understood. In this study, a nine-member ensemble was employed to characterize the spatial and inter-annual variability of three winter soil characteristics, annual number of frozen days, annual minimum temperature and annual number of freeze-thaw cycles over North America during the water years 2010–2016. The ensemble, including three land surface model (JULES, Noah2.7.1 and Noah-MP) and three forcing datasets (ECMWF, GDAS and MERRA2), was developed through the Snow Ensemble Uncertainty Project (SEUP). In many regions, there was remarkably good agreement across the ensemble for the winter soil temperatures. However, the variability among the ensemble's annual number of frozen days, as quantified with standard deviation, exceeded 150 days at the northern Pacific coastline. While the differences among the ensemble members' annual minimum temperature were typically <3 °C, the differences exceeded 6 °C north of 50°N. The ensemble members generally agreed within one to three freeze-thaw cycles in mid latitude regions, Alaska, and the south and west coasts of the USA. High variability among the ensemble, more than six freeze-thaw cycles, occurred in the Great Plains, northern Pacific coastline, and along the Appalachian Mountains. Differences in winter soil temperature characteristics were more apparent among the LSMs rather than the meteorological forcing datasets. Except for maritime regions, the Noah2.7.1 members had the fewest annual number of frozen days and the least number of freeze-thaw cycles. Noah2.7.1 also had the coldest annual minimum temperatures except for ephemeral regions. Comparisons between in-situ observations and the SEUP estimates of winter soil characteristics revealed that the modeled frozen period was much longer than observed, that the modeled annual minimum temperatures were much colder than observed, and the modeled freeze-thaw cycles occurred more frequently than observed. Excluding the high latitude sites, the observed frozen period is less than two months with the minimum temperature above − 5 °C at most of the studied sites, while the ensemble members simulated, on average, a four month frozen period with − 10 °C minimum temperature. Errors in capturing snow during the accumulation period appear to impact differences in modeled versus observed soil temperature throughout the entire winter.

Soil freeze/thaw↗

Evaluating the Community Land Model (CLM4.5) at a coniferous forest site in northwestern United States using flux and carbon-isotope measurements

Droughts in the western United States are expected to intensify with climate change. Thus, an adequate representation of ecosystem response to water stress in land models is critical for predicting carbon dynamics. The goal of this study was to evaluate the performance of the Community Land Model (CLM) version 4.5 against observations at an old-growth coniferous forest site in the Pacific Northwest region of the United States (Wind River AmeriFlux site), characterized by a Mediterranean climate that subjects trees to water stress each summer. CLM was driven by site-observed meteorology and calibrated primarily using parameter values observed at the site or at similar stands in the region. Key model adjustments included parameters controlling specific leaf area and stomatal conductance. Default values of these parameters led to significant underestimation of gross primary production, overestimation of evapotranspiration, and consequently overestimation of photosynthetic 13 C discrimination, reflected in reduced 13 C: 12 C ratios of carbon fluxes and pools. Adjustments in soil hydraulic parameters within CLM were also critical, preventing significant underestimation of soil water content and unrealistic soil moisture stress during summer. After calibration, CLM was able to simulate energy and carbon fluxes, leaf area index, biomass stocks, and carbon isotope ratios of carbon fluxes and pools in reasonable agreement with site observations. Overall, the calibrated CLM was able to simulate the observed response of canopy conductance to atmospheric vapor pressure deficit (VPD) and soil water content, reasonably capturing the impact of water stress on ecosystem functioning. Both simulations and observations indicate that stomatal response from water stress at Wind River was primarily driven by VPD and not soil moisture. The calibration of the Ball–Berry stomatal conductance slope ( m bb ) at Wind River aligned with findings from recent CLM experiments at sites characterized by the same plant functional type (needleleaf evergreen temperate forest), despite significant differences in stand composition and age and climatology, suggesting that CLM could benefit from a revised m bb value of 6, rather than the default value of 9, for this plant functional type. Conversely, Wind River required a unique calibration of the hydrology submodel to simulate soil moisture, suggesting that the default hydrology has a more limited applicability. Here, this study demonstrates that carbon isotope data can be used to constrain stomatal conductance and intrinsic water use efficiency in CLM, as an alternative to eddy covariance flux measurements. It also demonstrates that carbon isotopes can expose structural weaknesses in the model and provide a key constraint that may guide future model development.

54 ENVIRONMENTAL SCIENCES↗

Bayesian Calibration of the Community Land Model using Surrogates

We present results from the Bayesian calibration of hydrological parameters of the Community Land Model (CLM), which is often used in climate simulations and Earth system models. A statistical inverse problem is formulated for three hydrological parameters, conditioned on observations of latent heat surface fluxes over 48 months. Our calibration method uses polynomial and Gaussian process surrogates of the CLM, and solves the parameter estimation problem using a Markov chain Monte Carlo sampler. Posterior probability densities for the parameters are developed for two sites with different soil and vegetation covers. Our method also allows us to examine the structural error in CLM under two error models. We find that accurate surrogate models can be created for CLM in most cases. The posterior distributions lead to better prediction than the default parameter values in CLM. Climatologically averaging the observations does not modify the parameters’ distributions significantly. The structural error model reveals a correlation time-scale which can potentially be used to identify physical processes that could be contributing to it. While the calibrated CLM has a higher predictive skill, the calibration is under-dispersive.

Bayesian calibration↗

Nutrient Dynamics in a Coupled Terrestrial Biosphere and Land Model (ELM-FATES-CNP)

We present a representation of nitrogen and phosphorus cycling in the Functionally Assembled Terrestrial Ecosystem Simulator, a demographic vegetation model within the Energy Exascale Earth System land model. This representation is modular, and designed to allow testing of multiple hypothetical approaches for carbon-nutrient coupling in plants. Novel model hypotheses introduced in this work include, (a) the controls on plant acquisition of aqueous mineralized nutrients in the soil and (b) fairly straight forward methods of allocating nutrients to specific plant organs and their losses through live plant turnover as well as litter fluxes generated through plant mortality. This combines the new with pre-existing hypotheses (such as nitrogen fixation and soil decomposition) into a system that can accommodate plant-soil dynamics for a large number of size- and functional-type-resolved plant cohorts within a time-since-disturbance-resolved ecosystem. Root uptake of nutrients is governed by fine root biomass, and plants vary in their fine root biomass allocation in order to balance carbon and nutrient limitations to growth. We test the sensitivity of the model to a wide range of parameter variations and structural representations, and in the context of observations at Barro Colorado Island, Panama. A key model prediction is that plants in the high-light-availability canopy positions allocate more carbon to fine roots than plants in low-light understory environments, given the widely different carbon versus nutrient constraints of these two niches within a given ecosystem. This model provides a basis for exploring carbon-nutrient coupling with vegetation demography within Earth system models.

54 ENVIRONMENTAL SCIENCES↗

A feasibility study on porting the community land model onto accelerators using OpenACC

As environmental models (such as Accelerated Climate Model for Energy (ACME), Parallel Reactive Flow and Transport Model (PFLOTRAN), Arctic Terrestrial Simulator (ATS), etc.) became more and more complicated, we are facing enormous challenges regarding to porting those applications onto hybrid computing architecture. OpenACC appears as a very promising technology, therefore, we have conducted a feasibility analysis on porting the Community Land Model (CLM), a terrestrial ecosystem model within the Community Earth System Models (CESM)). Specifically, we used automatic function testing platform to extract a small computing kernel out of CLM, then we apply this kernel into the actually CLM dataflow procedure, and investigate the strategy of data parallelization and the benefit of data movement provided by current implementation of OpenACC. Even it is a non-intensive kernel, on a single 16-core computing node, the performance (based on the actual computation time using one GPU) of OpenACC implementation is 2.3 time faster than that of OpenMP implementation using single OpenMP thread, but it is 2.8 times slower than the performance of OpenMP implementation using 16 threads. On multiple nodes, MPI_OpenACC implementation demonstrated very good scalability on up to 128 GPUs on 128 computing nodes. This study also provides useful information for us to look into the potential benefits of “deep copy” capability and “routine” feature of OpenACC standards. In conclusion, we believe that our experience on the environmental model, CLM, can be beneficial to many other scientific research programs who are interested to porting their large scale scientific code using OpenACC onto high-end computers, empowered by hybrid computing architecture.

54 ENVIRONMENTAL SCIENCES↗

Modeling Isoprene Emission Response to Drought and Heatwaves Within MEGAN Using Evapotranspiration Data and by Coupling With the Community Land Model

We introduce two new drought stress algorithms designed to simulate isoprene emission with the Model of Emissions of Gases and Aerosols from Nature (MEGAN) model. The two approaches include the representation of the impact of drought on isoprene emission with a simple empirical approach for offline MEGAN applications and a more process-based approach for online MEGAN in Community Land Model (CLM) simulations. The two versions differ in their implementation of leaf-temperature impacts of mild drought. For the online version of MEGAN that is coupled to CLM, the impact of drought on leaf temperature is simulated directly and the calculated leaf temperature is considered for the estimation of isoprene emission. For the offline version, we apply an empirical algorithm derived from whole-canopy flux measurements for simulating the impact of drought ranging from mild to severe stage. In addition, the offline approach adopts the ratio ($f$ PET ) of actual evapotranspiration to potential evapotranspiration to quantify the severity of drought instead of using soil moisture. We applied the two algorithms in the CLM-CAM-chem (the Community Atmosphere Model with Chemistry) model to simulate the impact of drought on isoprene emission and found that drought can decrease isoprene emission globally by 11% in 2012. We further compared the formaldehyde (HCHO) vertical column density simulated by CAM-chem to satellite HCHO observations. We found that the proposed drought algorithm can improve the match with the HCHO observations during droughts, but the performance of the drought algorithm is limited by the capacity of the model to capture the severity of drought.

54 ENVIRONMENTAL SCIENCES↗

Evaluation of hydrologic components of community land model 4 and bias identification

Runoff and soil moisture are two key components of the global hydrologic cycle that should be validated at local to global scales in Earth System Models (ESMs) used for climate projection. Here, we have evaluated the runoff and surface soil moisture output by the Community Climate System Model (CCSM) along with 8 other models from the Coupled Model Intercomparison Project (CMIP5) repository using satellite soil moisture observations and stream gauge corrected runoff products. A series of Community Land Model (CLM) runs forced by reanalysis and coupled model outputs was also performed to identify atmospheric drivers of biases and uncertainties in the CCSM. Results indicate that surface soil moisture simulations tend to be positively biased in high latitude areas by most selected CMIP5 models except CCSM, FGOALS, and BCC, which share similar land surface model code. With the exception of GISS, runoff simulations by all selected CMIP5 models were overestimated in mountain ranges and in most of the Arctic region. In general, positive biases in CCSM soil moisture and runoff due to precipitation input error were offset by negative biases induced by temperature input error. Excluding the impact from atmosphere modeling, the global mean of seasonal surface moisture oscillation was out of phase compared to observations in many years during 1985–2004. The CLM also underestimated runoff in the Amazon, central Africa, and south Asia, where soils all have high clay content. We hypothesize that lack of a macropore flow mechanism is partially responsible for this underestimation. However, runoff was overestimated in the areas covered by volcanic ash soils (i.e., Andisols), which might be associated with poor soil porosity representation in CLM. Finally, our results indicate that CCSM predictability of hydrology could be improved by addressing the compensating errors associated with precipitation and temperature and updating the CLM soil representation.

54 ENVIRONMENTAL SCIENCES↗

Evaluating runoff simulations from the Community Land Model 4.0 using observations from flux towers and a mountainous watershed

Previous studies using the Community Land Model (CLM) focused on simulating landatmosphere interactions and water balance at continental to global scales, with limited attention paid to its capability for hydrologic simulations at watershed or regional scales. This study evaluates the performance of CLM 4.0 (CLM4) for hydrologic simulations, and explores possible directions of improvement. Specifically, it is found that CLM4 tends to produce unrealistically large temporal variation of runoff for applications at a mountainous catchment in the Northwest United States where subsurface runoff is dominant, as well as at a few flux tower sites. We show that runoff simulations from CLM4 can be improved by: (1) increasing spatial resolution of the land surface representations; (2) calibrating parameter values; (3) replacing the subsurface formulation with a more general nonlinear function; (4) implementing the runoff generation schemes from the Variability Infiltration Capacity (VIC) model. This study also highlights the importance of evaluating both the energy and water fluxes application of land surface models across multiple scales.

58 GEOSCIENCES↗

Evaluation of the New CNDV Option of the Community Land Model: Effects of Dynamic Vegetation and Interactive Nitrogen on CLM4 Means and Variability

The Community Land Model, version 4 (CLM4) includes the option to run the prognostic carbon–nitrogen (CN) model with dynamic vegetation (CNDV). CNDV, which simulates unmanaged vegetation, modifies the CN framework to implement plant biogeography updates. CNDV simulates a reasonable present-day distribution of plant functional types but underestimates tundra vegetation cover. The CNDV simulation is compared against a CN simulation using a vegetation distribution generated by CNDV and against a carbon-only simulation with prescribed nitrogen limitation (CDV). The comparisons focus on the means and variability of carbon pools and fluxes and biophysical factors, such as albedo, surface radiation, and heat fluxes. The study assesses the relative importance of incorporating interactive nitrogen (CDV to CNDV) versus interactive biogeography (CN to CNDV) in present-day equilibrium simulations. None of the three configurations performs consistently better in simulating carbon or biophysical variables compared to observational estimates. The interactive nitrogen ( N ) cycle reduces annual means and interannual variability more than dynamic vegetation. Dynamic vegetation reduces seasonal variability in leaf area and, therefore, in moisture fluxes and surface albedo. The interactive N cycle has the opposite effect of enhancing seasonal variability in moisture fluxes and albedo. CNDV contains greater degrees of freedom than CN or CDV by adjusting both through nitrogen–carbon interactions and through vegetation establishment and mortality. Thus, in these equilibrium simulations, CNDV acts as a stronger “regulator” of variability compared to the other configurations. To conclude, discussed are plausible explanations for this behavior, which has been shown in past studies to improve climate simulations through better represented climate–vegetation interactions.

54 ENVIRONMENTAL SCIENCES↗

Sensitivity of Global Terrestrial Gross Primary Production to Hydrologic States Simulated by the Community Land Model Using Two Runoff Parameterizations

The terrestrial water and carbon cycles interact strongly at various spatio-temporal scales. To elucidate how hydrologic processes may influence carbon cycle processes, differences in terrestrial carbon cycle simulations induced by structural differences in two runoff generation schemes were investigated using the Community Land Model 4 (CLM4). Simulations were performed with runoff generation using the default TOPMODEL-based and the Variable Infiltration Capacity (VIC) model approaches under the same experimental protocol. The comparisons showed that differences in the simulated gross primary production (GPP) are mainly attributed to differences in the simulated leaf area index (LAI) rather than soil moisture availability. More specifically, differences in runoff simulations can influence LAI through changes in soil moisture, soil temperature, and their seasonality that affect the onset of the growing season and the subsequent dynamic feedbacks between terrestrial water, energy, and carbon cycles. As a result of a relative difference of 36% in global mean total runoff between the two models and subsequent changes in soil moisture, soil temperature, and LAI, the simulated global mean GPP differs by 20.4%. However, the relative difference in the global mean net ecosystem exchange between the two models is small (2.1%) due to competing effects on total mean ecosystem respiration and other fluxes, although large regional differences can still be found. Our study highlights the significant interactions among the water, energy, and carbon cycles and the need for reducing uncertainty in the hydrologic parameterization of land surface models to better constrain carbon cycle modeling.

carbon↗

Bayesian optimization of the Community Land Model simulated biosphere-atmosphere exchange using CO 2 observations from a dense tower network and aircraft campaigns over Oregon

Here, the vast forests and natural areas of the Pacific Northwest comprise one of the most productive ecosystems in the northern hemisphere. The heterogeneous landscape of Oregon poses a particular challenge to ecosystem models. We present a framework using a scaling factor Bayesian inversion to improve the modeled atmosphere-biosphere exchange of carbon dioxide. Observations from 5 CO/CO 2 towers, eddy covariance towers, and airborne campaigns were used to constrain the Community Land Model CLM4.5 simulated terrestrial CO 2 exchange at a high spatial and temporal resolution (1/24°, 3-hourly). To balance aggregation errors and the degrees of freedom in the inverse modeling system, we applied an unsupervised clustering approach for the spatial structuring of our model domain. Data from flight campaigns were used to quantify the uncertainty introduced by the Lagrangian particle dispersion model that was applied for the inversions. The average annual statewide net ecosystem productivity (NEP) was increased by 32% to 29.7 TgC per year by assimilating the tropospheric mixing ratio data. The associated uncertainty was decreased by 28.4% to 29%, on average over the entire Oregon model domain with the lowest uncertainties of 11% in western Oregon. The largest differences between posterior and prior CO 2 fluxes were found for the Coast Range ecoregion of Oregon that also exhibits the highest availability of atmospheric observations and associated footprints. In this area, covered by highly productive Douglas-fir forest, the differences between the prior and posterior estimate of NEP averaged 3.84 TgC per year during the study period from 2012 through 2014.

54 ENVIRONMENTAL SCIENCES↗