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At least 91 records · Page 5

Determining the Molecular Packing Arrangements on Protein Crystal Faces by Atomic Force Microscopy

Periodic Bond Chain (PBC) analysis of the packing of tetragonal lysozyme crystals have revealed that there are two possible molecular packing arrangements for the crystal faces. The analysis also predicted that only one of these, involving the formation of helices about the 4(sub 3) axes, would prevail during crystal growth. In this study high resolution atomic force microscopy (AFM) was employed to verify these predictions for the (110) crystal face. A computer program was developed which constructs the expected AFM image for a given tip shape for each possible molecular packing arrangement. By comparing the actual AFM image with the predicted images the correct packing arrangement was determined. The prediction of an arrangement involving 4(sub 3) helices was confirmed in this manner,"while the alternate arrangement was not observed. The investigation also showed the protein molecules were packed slightly closer about the 4(sub 3) axes than in the crystallographic arrangement of the crystal interior. This study demonstrates a new approach for determining the molecular packing arrangements on protein crystal faces. It also shows the power of combining a theoretical PBC analysis with experimental high resolution AFM techniques in probing protein crystal growth processes at the molecular level.

Li, Huayu↗

M51: Molecular spiral arms, GMAs and superclouds

Researchers present an aperture synthesis image of M51 in the CO 1 to 0 line at 9 seconds x 7 seconds resolution made with the Owens Valley Millimeter Interferometer. The image is a mosaic of 30 one-arcminute fields. The image shows narrow spiral arms which are coincident with the optical dust lanes and non-thermal radio emission, but are offset from the ridges of H alpha emission. Many dense concentrations of CO emission, termed Giant Molecular Associations (GMAs), are seen both along and between the arms. The typical GMA mass is about 3 times 10(exp 7) solar mass. Most of the on-arm GMAs appear to be gravitationally bound. These GMAs consist of several spectral components (Molecular Superclouds) with typical mass 10(exp 7) solar mass, which also appear to be bound. The observed streaming motions in the GMAs are consistent with density wave theory. The interarm GMAs are not gravitationally bound, and are likely to be due to a secondary compression of the density wave.

Rand, Richard J.↗

IRAS images of nearby dark clouds

We have investigated approximately 100 nearby molecular clouds using the extensive, all-sky database of IRAS. The clouds in this study cover a wide range of physical properties including visual extinction, size, mass, degree of isolation, homogeneity and morphology. IRAS 100 and 60 micron co-added images were used to calculate the 100 micron optical depth of dust in the clouds. These images of dust optical depth compare very well with (12)CO and (13)CO observations, and can be related to H2 column density. From the optical depth images we locate the edges of dark clouds and the dense cores inside them. We have identified a total of 43 `IRAS clouds' (regions with A(sub v) greater than 2) which contain a total of 255 `IRAS cores' (regions with A(sub v) greater than 4) and we catalog their physical properties. We find that the clouds are remarkably filamentary, and that the cores within the clouds are often distributed along the filaments. The largest cores are usually connected to other large cores by filaments. We have developed selection criteria to search the IRAS Point Source Catalog for stars that are likely to be associated with the clouds and we catalog the IRAS sources in each cloud or core. Optically visible stars associated with the clouds have been identified from the Herbig and Bell catalog. From these data we characterize the physical properties of the clouds including their star-formation efficiency.

Wood, Douglas O. S.↗

Tailorable Doping-Spike PtSi Infrared Detectors Fabricated by Si Molecular Beam Epitaxy

By incorporating a 1-nm-thick p+ doping spike at the PtSi/Si interface, we have successfullydemonstrated extended cutoff wavelengths of PtSi Schottky infrared detectors. The extended cutoffwavelengths resulted from the reduced effective potential barriers due to the combined effects of anincreased electric field near the silicide/Si interface and the Schottky image force. The p+ dopingspikes were grown by molecular beam epitaxy at 450 degrees C using elemental boron as the dopantsource, with doping concentrations ranging from 5 x 10^(19) to 2 x 10^(20) cm^(-3). The cutoffwavelengths were shown to increase with increasing doping concentrations of the p+ spikes. Thermionic emission dark current characteristics were observed and photoresponse in the LWIRregime was demonstrated. Furthermore, the effective potential barriers determined by the Richardsonplots were used to study the electrically activated boron dopant concentrations of the thin (1-nm-thick) spikes.

del Castillo, H. M.↗

The First Extragalactic Detection of Higher-Order Hydrogen Recombination Lines

The Large Magellanic Cloud (LMC) is the nearest (~50 kpc) star-forming galaxy characterized by a low metallicity (Z~0.3-0.5 Z⨀) similar to galaxies during the early phases of their assembly. As a result, star formation studies in the LMC provide a stepping stone to understanding star formation at earlier epochs of the universe where these processes cannot be directly observed. N113 is one of the most prominent star-forming regions in the LMC hosting one of the most massive giant molecular clouds. N113 is small enough to be imaged in its entirety, but large enough to showcase many important phenomena such as multiple generations of stars, stellar feedback, and different environments. We present our findings from an investigation of the early stages of star formation in the N113 region using the Atacama Large Millimeter/submillimeter Array (ALMA) molecular line data probing a wide density range: 12CO, 13CO, and C18O (2-1), 13CO and C18O (1-0), HCN (1-0), HCO+ (1-0), H13CN (1-0) and (3-2), H13CO+ (1-0) and (3-2), CS (2-1) and (5-4), as well as 1.3 mm and 3 mm continuum. We used the Python package quickclump to identify molecular clumps. We utilized the multiline non-LTE fitting tool based on models from RADEX developed by Finn et al. (2021, ApJ, 917, 106) to construct the CO, HCN, HCO+, and CS temperature and column density, and the H2 density maps of N113. We constructed a catalog of molecular clumps including their physical properties, chemical abundances, sizes, velocities, and velocity dispersions. To establish the evolutionary status of the clumps, their positions were compared with previously identified young stellar objects (YSOs) from the Spitzer/SAGE and Herschel/HERITAGE surveys, as well as water and OH masers. We compared the properties of the clumps in N113 to those in the Galaxy and other regions in the LMC to assess the impact of the environment (e.g., metallicity, stellar feedback) on the star formation process.

Marta M Sewilo↗

New Herbig-Haro objects in star-forming regions

A list of 25 new Herbig-Haro objects, HH 58 to HH 82, in the Orion molecular clouds and in southern molecular cloud complexes has been compiled. CCD images in the S II 6717, 6731 forbidden lines are presented for the objects, together with a few spectra and some IR observations. The individual objects and, when identified, their energy sources are discussed. HH 65 is located in the red lobe of the bipolar outflow associated with the highly variable reflection nebula Re 50. HH 67 is a 22-arcsec long sinusoidal jet. HH 68/69 consists of a long, linear chain of four HH knots. HH 72 emerges from a 120-solar luminosity IRAS source embedded in a Bok globule. HH 79 is the first HH object discovered in the Ophiuchus clouds. HH 80/81 in Sagittarius are among the brightest HH objects known, have complex velocities, high excitation conditions and emerge from a 6000-solar luminosity young B-star. HH 82 is associated with the bright variable star S Coronae Australis.

Reipurth, BO↗

Biosensors for Real-Time Monitoring of Radiation-Induced Biologic Effects in Space

This proposal seeks to develop cellular biosensors based on dendritic polymers. Nanoscale polymer structures less than 20 nm in diameter will be used as the basis of the sensor/actuators. The structures will be designed to target into specific cells of an astronaut and be able to monitor health issues such as the exposure to radiation or infectious agents. Multiple components can be assembled on the polymers including target directors, analytical devices (such as molecular probes), magnetic particles and metals, and imaging agents. The design and assembly of these devices has been pioneered at the Center for Biologic Nanotechnology in the University of Michigan. These molecules would also be able to administer therapeutics in response to the needs of the astronaut, and act as actuators to remotely manipulate an astronaut as necessary to ensure their safety. The reporting will be accomplished either through fluorescence signal monitoring, with the use of multispectral analysis for signal interpretation, or through functional MRI. These nanosensors coupled to NEMS devices could facilitate the success and increase the safety of extended space flight.

Baker, James R., Jr.↗

Kinematics of the SgrB2(N-LMH) Molecular Core

Ethyl cyanide (CH3CH2CN) emission and absorption have been imaged with the Very Large Array (VLA) toward SgrB2(N-LMH) by means of the 5(sub 15)-4(sub 14) rotational transition at 43.5 GHz (lambda approx. 7 mm). The 1.5" x 1.4" VLA beam shows two principal sources of ethyl cyanide emission: an unresolved source approx. 5" north of the LMH that is kinematically consistent with simple expansion, contraction, or small-scale turbulence, and the resolved LMH core source itself that shows kinematics indicating an edge-on rotating disk that extends 23" (approx. 0.1 pc) in the approximate east-west direction. A search for the 7(sub 07)-6(sub 06) rotational transition of the amino acid glycine (NH2CH2COOH) at 43.7 GHz toward SgrB2(N-LMH) gave negative results.

Hollis, J. M.↗

WFPC2 Imaging of Saturn's Far-Ultraviolet Aurora

This oral report describes the first images of Saturn's far- ultraviolet polar aurora taken with the Hubble Space Telescope Wide Field and Planetary Camera 2 in October 1994. The images revealed auroral emissions from atomic and molecular hydrogen in both the north and south circumpolar region. Details of this observational data are given and interpreted.

Saturn Hubble Space Telescope Aurora Planetary Cam↗

Inductively Coupled Plasma Etching for Delineation of InAs/GaSb Pixels

We developed 320x256 Complimentary Barrier Infrared (CBIRD) focal plane array (FPA) for long wave infrared (LWIR) imaging application. The FPA layers grown by molecular beam epitaxy (MBE) had 300 periods 1.9 micro m thick absorber. The CBIRD arrays showed the mean dark current density of 2.2 x 10(exp -4) A/cm2, when 128 mV bias voltage was applied. The long wave cut off was observed at 8.8 micrometers at the 50% peak and the maximum quantum efficiency was 54% at 5.6 micrometers. The arrays had 81% fill factor with 97% operability with noise equivalent difference temperature (NE(delta)T) of 18.6 mK and a mean detectivity of D*=1.3 x 10(exp 11) Hz(exp 1/2)/W.

InAs/GaSb↗

Large-Scale Structure of the Molecular Gas in Taurus Revealed by High Spatial Dynamic Range Spectral Line Mapping

Viewgraph topics include: optical image of Taurus; dust extinction in IR has provided a new tool for probing cloud morphology; observations of the gas can contribute critical information on gas temperature, gas column density and distribution, mass, and kinematics; the Taurus molecular cloud complex; average spectra in each mask region; mas 2 data; dealing with mask 1 data; behavior of mask 1 pixels; distribution of CO column densities; conversion to H2 column density; variable CO/H2 ratio with values much less than 10(exp -4) at low N indicated by UV results; histogram of N(H2) distribution; H2 column density distribution in Taurus; cumulative distribution of mass and area; lower CO fractional abundance in mask 0 and 1 regions greatly increases mass determined in the analysis; masses determined with variable X(CO) and including diffuse regions agrees well with the found from L(CO); distribution of young stars as a function of molecular column density; star formation efficiency; star formation rate and gas depletion; and enlarged images of some of the regions with numerous young stars. Additional slides examine the origin of the Taurus molecular cloud, evolution from HI gas, kinematics as a clue to its origin, and its relationship to star formation.

molecular clouds↗

H2 and H I emission line imaging of the ring nebula (NGC 6720)

Infrared emission-line images of the v = 1-0 S(1) transition of molecular hydrogen and Br-gamma recombination line of atomic hydrogen which cover the entire extent of NGC 6720, the Ring nebula. The maps presented here are the highest angular resolution images of these transitions yet produced for this object and have very low relative positional uncertainty. As a result, the spatial stratification of the ionized and shocked molecular zones within the nebula is clearly resolved. These data, and data from the Infrared Astronomical Satellite, are used to determine the H2, H I, and dust mass within the nebula. Energy sources for the dust heating, formation and destruction of the H2, and overall evolution of the nebula are also discussed.

Greenhouse, Matthew A.↗

Giant Molecular Clouds and High-Mass Star Formation in the Milky Way

We are conducting an extensive investigation of high-mass (OB) star formation within the dense cores of giant molecular clouds (GMCS) throughout the first Galactic quadrant of the Milky Way using enhanced resolution Infrared Astronomical Satellite (IRAS) images in combination with high-resolution ground-based observations in millimeter wave molecular transitions and radio continuum. As part of this investigation several resolution enhancement algorithms are applied to the IRAS data, including the HIgh RESolution (HIRES) algorithm developed at the IRAS Processing and Analysis Center (IPAC), as well as others ("pixon" image reconstruction). In addition, as part of a related study, we have completed a large survey of the CO emission in the first Galactic quadrant using the 15-element array detector (QUARRY) with the Five College Radio Astronomy Observatory (FCRAO) 14 m antenna, which provides sampling at an angular resolution of 50", comparable to that attained in the reprocessed IRAS data. Both of these data sets are compared with a sample of ultra-compact (UC) H II regions taken from a high-resolution multi-wavelength (6 and 20 cm) radio survey of the Galactic plane using the NRAO Very Large Array (VLA). Selected regions are observed in 1.3 mm continuum, which has proven to be particularly sensitive to the dust column density. Extensive observations of molecular clouds at high resolution in CO, CS and HCN are combined with the reprocessed IRAS high-resolution images to give a more complete picture of the physical conditions and kinematics of high-mass star forming GMCS. Our goals are to study in detail the morphology, structure, and rate of high-mass star formation within GMCs throughout the Galactic disk from the inner edge of the molecular ring to the outer Galaxy.

Source record↗

The source of the relativistic particles in the galactic center arc

Three fields in the molecular cloud M0.20-0.033, located near the midpoint of the filamentary 'Galactic center arc,' have been imaged in the CS J = 2-1 line with the OVRO millimeter interferometer. Several molecular clumps have been found to coincide with the endpoints of a number of the arc's nonthermal filaments (NTFs), suggesting that the relativistic particles present along the filaments originate in these molecular cloudlets. The most striking correlation involves a clump that is elongated along the direction of a pair of NTFs, and that approximately coincides with both their endpoints. These observations thus provide clues to the particle acceleration mechanism operative in the Galactic center arc: magnetic energy is likely liberated as the ambient field, tangled by the clumps' motions, reconnects in the advancing clumps' leading, externally ionized, surface layers.

Serabyn, E.↗

Molecular View of Protein Crystal Growth: Molecular Interactions, Surface Reconstruction and Growth Mechanism

Studies of the growth and molecular packing of tetragonal lysozyme crystals suggest that there is an underlying molecular growth mechanism, in addition to the classical one involving screw dislocation/2D) nucleation growth. These crystals are constructed by strongly bonded molecular chains forming helices about the 43 axes. The helices are connected to each other by weaker bonds. Crystal growth proceeds by the formation of these 4(sub 3) helices, which would explain some unexpected observations by earlier investigators, such as bimolecular growth steps on the (110) face. Another consequence of these molecular considerations is that only one of two possible packing arrangements could occur on the crystal faces and that their growth unit was at least a tetramer corresponding to the 4(sub 3) helix. Two new high resolution atomic force microscopy (AFM) techniques were developed to directly confirm these predictions on tetragonal lysozyme crystals. Most earlier investigations of protein crystal growth with AFM were in the low resolution mode which is adequate to investigate the classical growth mechanisms, but cannot resolve molecular features and mechanisms. Employing the first of the newly developed techniques, high resolution AFM images of the (110) face were compared with the theoretically constructed images for the two possible packing arrangements on this face. The prediction that the molecular packing arrangement of these faces corresponded to that for complete 4(sub 3) helices was confirmed in this manner. This investigation also showed the occurrence of surface reconstruction on protein crystals. The molecules on the surface of the (110) face were found to pack closer along the 4(sub 3) axes than those in the interior. The second new AFM technique was used to follow the growth process by measuring the dimensions of individual growth units on the (110) face. Linescans across a growth step, performed near the saturation limit of the crystals, allowed the growth unit dimensions to be measured as they were being incorporated into the crystal. These measurements showed that growth on the (110) face proceeded by the formation of new 4(sub 3) helices from the addition of many growth units of at least tetramer size. This is the first time that a time-resolved AFM technique has been used to observe individual molecular events during crystal growth.

Nadarajah, Arunan↗

HH55 and its energy source

Imaging and spectroscopic observations of HH55 in the Lupus molecular cloud are presented. Cohen and Schwartz (1987) have shown that HH55 is apparently not excited by the nearby T Tau star RU Lup as once thought but rather by the coincident FIR point source 15533 - 3742 extracted from IRAS coadded images. The optical counterpart of this IR source is identified as an active, relatively unobscured M-dwarf star. The forbidden emission lines observed in the stellar spectrum exhibit slight asymmetries to blueshifted velocities. Deconvolution of the emission lines reveals a weak moderate-velocity (-100 km/sec) wind component and a stronger emission component whose velocity is very close to that of the star.

Heyer, Mark H.↗

Long-Wavelength PtSi Infrared Detectors Fabricated by Incorporating a P+ Doping Spike Grown by Molecular Beam Epitaxy

By incorporating a 1-nm-thick p+ doping spike at the PtSi/Si interface, we have successfullydemonstrated extended cutoff wavelengths of PtSi Schottky infrared detectors in the long wavelengthinfrared (LWIR) regime for the first time. The extended cutoff wavelengths resulted from thecombined effects of an increased electric field near the silicide/Si interface due to the p+ dopingspike and the Schottky image force. The p+ doping spikes were grown by molecular bema epitaxy at450 degrees C using elemental boron as the dopant source, with doping concentrations ranging from 5x 10^(19) to 2 x 10^(20) cm^(-3). Transmission electron microscopy indicated good crystallinequality of the doping spikes. The cutoff wavelengths were shown to increase with increasing dopingconcentrations of the p+ spikes. Thermionic emission dark current characteristics were observed andphotoresponse in the LWIR regime was demonstrated.

Maserjian, J.↗