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DOE OSTI2021

High-Resolution Spatio-Temporal Estimation of Net Ecosystem Exchange in Ice-Wedge Polygon Tundra Using In Situ Sensors and Remote Sensing Data

Land-atmosphere carbon exchange is known to be extremely heterogeneous in arctic ice-wedge polygonal tundra regions. In this study, a Kalman filter-based method was developed to estimate the spatio-temporal dynamics of daytime average net ecosystem exchange (NEEday) at 0.5-m resolution over a 550 m by 700 m study site. We integrated multi-scale, multi-type datasets, including normalized difference vegetation indices (NDVIs) obtained from a novel automated mobile sensor system (or tram system) and a greenness index map obtained from airborne imagery. We took advantage of the significant correlations between NDVI and NEEday identified based on flux chamber measurements. The weighted average of the estimated NEEday within the flux-tower footprint agreed with the flux tower data in term of its seasonal dynamics. We then evaluated the spatial variability of the growing season average NEEday, as a function of polygon geomorphic classes; i.e., the combination of polygon types—which are known to present different degradation stages associated with permafrost thaw—and microtopographic features (i.e., troughs, centers and rims). Our study suggests the importance of considering microtopographic features and their spatial coverage in computing spatially aggregated carbon exchange.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Hyperspectral Reflectance-Based High Throughput Phenotyping to Assess Water-Use Efficiency in Cotton

Cotton is a pivotal global commodity underscored by its economic value and widespread use. In the face of climate change, breeding resilient cultivars for variable environmental conditions becomes increasingly essential. However, the process of phenotyping, crucial to breeding programs, is often viewed as a bottleneck due to the inefficiency of traditional, low-throughput methods. To address this limitation, this study utilizes hyperspectral remote sensing, a promising tool for assessing crucial crop traits across forty cotton varieties. The results from this study demonstrated the effectiveness of four vegetation indices (VIs) in evaluating these varieties for water-use efficiency (WUE). The prediction accuracy for WUE through VIs such as the simple ratio water index (SRWI) and normalized difference water index (NDWI) was higher (up to R2 = 0.66), enabling better detection of phenotypic variations (p < 0.05) among the varieties compared to physiological-related traits (from R2 = 0.21 to R2 = 0.42), with high repeatability and a low RMSE. These VIs also showed high Pearson correlations with WUE (up to r = 0.81) and yield-related traits (up to r = 0.63). We also selected high-performing varieties based on the VIs, WUE, and fiber quality traits. This study demonstrated that the hyperspectral-based proximal sensing approach helps rapidly assess the in-season performance of varieties for imperative traits and aids in precise breeding decisions.

Agriculture↗

DOE OSTI2023

Projection of Future Fire Emissions Over the Contiguous US Using Explainable Artificial Intelligence and CMIP6 Models

Abstract Increasing temperature and water cycle changes due to warming climate may increase the frequency and intensity of wildfires. Fire emission projections are useful for informing strategies for adaptation and mitigation of fire impacts on societies and ecosystems. Here, we construct a neural network (NN) model explained by the Shapley Additive explanation to predict fire PM 2.5 emissions change and understand their drivers over the contiguous US (CONUS) in the mid‐21st century under a high greenhouse gas emissions scenario (SSP5‐8.5). Using future meteorology and leaf area index (LAI) simulated by eight global climate models from the Coupled Model Intercomparison Project Phase 6, future population density, and present‐day land use and land cover (LULC) as input to the NN model, the total fire PM 2.5 emissions over CONUS are projected to increase by 4%–75% (model spread). Among different regions, fire emissions in the western US are projected to increase more significantly in June‐July‐August than in other seasons and regions, with the median ratios of future to present‐day fire emissions ranging from 1.67 to 2.86. The increases in fire emissions are mainly driven by increasing normalized temperature (23%–29%) and decreasing soil moisture (2%–10%) in the future. When future LULC change is considered, the projected fire emissions further increase by 58%–83% over the western US compared to projections without LULC change because of future increases in vegetation fraction. The results highlight the important role of warmer temperature, decreasing soil moisture, and LULC change in increasing fire emissions in the future.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Contributions of vegetation heterogeneity within tower footprint to CO 2 flux estimations through graph neural network modeling

Net ecosystem exchange of CO 2 (Fc) measured directly by eddy covariance towers is based on various assumptions, including large, flat and homogenous land cover type. In reality, often a tower site is not large enough for flux measurements, and landscapes consist of patches of different land cover types within the flux footprint. In addition, some portions of fluxes are contributed by different cover types when a footprint exceeds the size of the target ecosystem. The contributions of non-dominant patches to Fc are often ignored. Here, in this study, we propose a novel integrated modeling framework that combines random forest (RF) and XGBoost with a residual correction module based on a deep graph convolutional network (DeeperGCN) to simulate Fc for seven flux measurement sites in southwest Michigan. High-resolution remote sensing vegetation indices, soil properties, meteorological variables, and footprint-weighted spatial features were used as model inputs at three spatial resolutions (10 m, 20 m, 30 m), and their importance in predicting Fc with DeeperGCN was assessed. We found that residual correction using DeeperGCN significantly improved prediction accuracy, with the R 2 increasing from 0.9098 to 0.9479 for RF and from 0.9235 to 0.9433 for XGBoost. At site level, the maximum improvement in R 2 reached 0.1617. Paired t-tests confirmed that these improvements were statistically significant (p < 0.05). Among all predictors, leaf area index and incoming shortwave radiation emerged as the dominant drivers of spatial residual variation, followed by precipitation, relative humidity, and selected vegetation indices. The 20 m resolution yielded the best balance between model performance and computational efficiency. In conclusion, our modeling framework effectively captures both spatial heterogeneity and nonlinear interactions, offering a robust solution for spatially explicit flux modeling in structurally diverse ecosystems beyond the study sites.

footprint model↗

DOE OSTI2023

Estimating Field-Level Perennial Bioenergy Grass Biomass Yields Using the Normalized Difference Red-Edge Index and Linear Regression Analysis for Central Virginia, USA

We investigated the indicative power of the normalized difference red-edge index (NDRE) for estimating field-level perennial bioenergy grass biomass yields utilizing Sentinel-2 imagery and a linear regression model as a rapid, cost-effective method for biomass yield estimations for bioenergy. We used 2019 data from three study sites containing mature perennial bioenergy grass stands in central Virginia, USA. Of the simulated daily NDRE values based on the temporally weighted averaging of two temporal neighbors, we found the strongest index–yield correlation on 11 August (R = 0.85). We estimated the perennial bioenergy grass biomass yields for (1) all sites using the data pooled from the three sites (all-site estimation) and (2) each site using the data pooled from the other two sites (cross-site estimation). The estimated field-level perennial bioenergy grass biomass yields strongly correlated with the recorded yields (average R2 = 0.76), with a root mean square error (RMSE) of 1.5 Mg/ha and a mean absolute error (MAE) of 1.2 Mg/ha for the all-site estimation. For the cross-site estimation, the site with diverse perennial grass types had the weakest correlation (R2 = 0.44) of the sites, indicating a difficulty in accounting for heterogeneous index–yield relationships in a single model. In addition to identifying a strong indicative power of the NDRE for estimating the overall perennial bioenergy grass biomass yields at a field level, the findings from this study call for an analysis across multiple perennial grasses and a comparison using multiple sites to understand (1) if the indicative power of the index shifts from the biomass of the specific perennial bioenergy grass type to the overall biomass during the growing season and (2) the level of perennial bioenergy grass heterogeneity that may hinder the remotely sensed biomass yield estimation using a single model.

09 BIOMASS FUELS↗