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Automatic Relative Debugging of OpenMP Programs

In this work we show how automatic relative debugging can be used to find differences in computation between a serial program and an OpenMP parallel version of that program. Backtracking and re-execution are used to determine the first OpenMP parallel region that produces a difference in computation that may lead to an incorrect value the user has indicated. Tool-parallelized programs are addressed by utilizing static analysis and directive information from the parallelization tool. Manually-parallelized programs are addressed as well by performing data dependence and directive analysis.

Matthews, Gregory

Boundary element analysis on vector and parallel computers

Boundary element analysis (BEA) can be characterized as a numerical technique that generally shifts the computational burden in the analysis toward numerical integration and the solution of nonsymmetric and either dense or blocked sparse systems of algebraic equations. Researchers have explored the concept that the fundamental characteristics of BEA can be exploited to generate effective implementations on vector and parallel computers. In this paper, the results of some of these investigations are discussed. The performance of overall algorithms for BEA on vector supercomputers, massively data parallel single instruction multiple data (SIMD), and relatively fine grained distributed memory multiple instruction multiple data (MIMD) computer systems is described. Some general trends and conclusions are discussed, along with indications of future developments that may prove fruitful in this regard.

Kane, J. H.

Concurrent file operations in a high performance FORTRAN

Distributed memory multiprocessor systems can provide the computing power necessary for large scale scientific applications. A critical performance issue for a number of these applications is the efficient transfer of data to secondary storage. Recently several research groups have proposed FORTRAN language extensions for exploiting the data parallelism of such scientific codes on distributed memory architectures. However, few of these high performance FORTRAN's provide appropriate constructs for controlling the use of the parallel I/O capabilities of modern multiprocessing machines. In this paper, we propose constructs to specify I/O operations for distributed data structures in the context of Vienna Fortran. These operations can be used by the programmer to provide information which can help the compiler and runtime environment make the most efficient use of the I/O subsystem.

Brezany, Peter

Graphics Processing Unit Assisted Thermographic Compositing

Objective: To develop a software application utilizing general purpose graphics processing units (GPUs) for the analysis of large sets of thermographic data. Background: Over the past few years, an increasing effort among scientists and engineers to utilize the GPU in a more general purpose fashion is allowing for supercomputer level results at individual workstations. As data sets grow, the methods to work them grow at an equal, and often great, pace. Certain common computations can take advantage of the massively parallel and optimized hardware constructs of the GPU to allow for throughput that was previously reserved for compute clusters. These common computations have high degrees of data parallelism, that is, they are the same computation applied to a large set of data where the result does not depend on other data elements. Signal (image) processing is one area were GPUs are being used to greatly increase the performance of certain algorithms and analysis techniques. Technical Methodology/Approach: Apply massively parallel algorithms and data structures to the specific analysis requirements presented when working with thermographic data sets.

Ragasa, Scott

Application of data flow concepts to a multigrid solver for the Euler equations

In this study a multigrid solver for Euler equations (FLO52R) was examined to determine its performance potential on a hypothetical computer using a data flow architecture. The proposed computer would require massive parallelism to realize its design performance. On the other hand this parallelism would be more easily realized than with a conventional vector processor such as the Cray-1S. Several changes to the proposed design substantially alleviated most of the remaining bottlenecks to parallel processing. Other changes allowed clearer definition of memory access and disk I/O. Finally, a portion of the algorithm was rewritten to improve parallel performance. With these changes, performance levels approaching that of a Cray-1S may be possible for a computer costing far less. Estimates are given for overall speed, memory, and network bandwidth, and for instruction memory requirements.

Merriam, M. L.

Characterizing parallel file-access patterns on a large-scale multiprocessor

Rapid increases in the computational speeds of multiprocessors have not been matched by corresponding performance enhancements in the I/O subsystem. To satisfy the large and growing I/O requirements of some parallel scientific applications, we need parallel file systems that can provide high-bandwidth and high-volume data transfer between the I/O subsystem and thousands of processors. Design of such high-performance parallel file systems depends on a thorough grasp of the expected workload. So far there have been no comprehensive usage studies of multiprocessor file systems. Our CHARISMA project intends to fill this void. The first results from our study involve an iPSC/860 at NASA Ames. This paper presents results from a different platform, the CM-5 at the National Center for Supercomputing Applications. The CHARISMA studies are unique because we collect information about every individual read and write request and about the entire mix of applications running on the machines. The results of our trace analysis lead to recommendations for parallel file system design. First the file system should support efficient concurrent access to many files, and I/O requests from many jobs under varying load conditions. Second, it must efficiently manage large files kept open for long periods. Third, it should expect to see small requests predominantly sequential access patterns, application-wide synchronous access, no concurrent file-sharing between jobs appreciable byte and block sharing between processes within jobs, and strong interprocess locality. Finally, the trace data suggest that node-level write caches and collective I/O request interfaces may be useful in certain environments.

Purakayastha, Apratim

The Automated Instrumentation and Monitoring System (AIMS): Design and Architecture

Whether a researcher is designing the 'next parallel programming paradigm', another 'scalable multiprocessor' or investigating resource allocation algorithms for multiprocessors, a facility that enables parallel program execution to be captured and displayed is invaluable. Careful analysis of such information can help computer and software architects to capture, and therefore, exploit behavioral variations among/within various parallel programs to take advantage of specific hardware characteristics. A software tool-set that facilitates performance evaluation of parallel applications on multiprocessors has been put together at NASA Ames Research Center under the sponsorship of NASA's High Performance Computing and Communications Program over the past five years. The Automated Instrumentation and Monitoring Systematic has three major software components: a source code instrumentor which automatically inserts active event recorders into program source code before compilation; a run-time performance monitoring library which collects performance data; and a visualization tool-set which reconstructs program execution based on the data collected. Besides being used as a prototype for developing new techniques for instrumenting, monitoring and presenting parallel program execution, AIMS is also being incorporated into the run-time environments of various hardware testbeds to evaluate their impact on user productivity. Currently, the execution of FORTRAN and C programs on the Intel Paragon and PALM workstations can be automatically instrumented and monitored. Performance data thus collected can be displayed graphically on various workstations. The process of performance tuning with AIMS will be illustrated using various NAB Parallel Benchmarks. This report includes a description of the internal architecture of AIMS and a listing of the source code.

Yan, Jerry C.

Application of Reconfigurable Computing Technology to Multi-KiloHertz Micro-Laser Altimeter (MMLA) Data Processing

The Multi-KiloHertz Micro-Laser Altimeter (MMLA) is an aircraft based instrument developed by NASA Goddard Space Flight Center with several potential spaceflight applications. This presentation describes how reconfigurable computing technology was employed to perform MMLA signal extraction in real-time under realistic operating constraints. The MMLA is a "single-photon-counting" airborne laser altimeter that is used to measure land surface features such as topography and vegetation canopy height. This instrument has to date flown a number of times aboard the NASA P3 aircraft acquiring data at a number of sites in the Mid-Atlantic region. This instrument pulses a relatively low-powered laser at a very high rate (10 kHz) and then measures the time-of-flight of discrete returns from the target surface. The instrument then bins these measurements into a two-dimensional array (vertical height vs. horizontal ground track) and selects the most likely signal path through the array. Return data that does not correspond to the selected signal path are classified as noise returns and are then discarded. The MMLA signal extraction algorithm is very compute intensive in that a score must be computed for every possible path through the two dimensional array in order to select the most likely signal path. Given a typical array size with 50 x 6, up to 33 arrays must be processed per second. And for each of these arrays, roughly 12,000 individual paths must be scored. Furthermore, the number of paths increases exponentially with the horizontal size of the array, and linearly with the vertical size. Yet, increasing the horizontal and vertical sizes of the array offer science advantages such as improved range, resolution, and noise rejection. Due to the volume of return data and the compute intensive signal extraction algorithm, the existing PC-based MMLA data system has been unable to perform signal extraction in real-time unless the array is limited in size to one column, This limits the ability of the MMLA to operate in environments with sparse signal returns and a high number of noise return. However, under an IR&D project, an FPGA-based, reconfigurable computing data system has been developed that has been demonstrated to perform real-time signal extraction under realistic operating constraints. This reconfigurable data system is based on the commercially available Firebird Board from Annapolis Microsystems. This PCI board consists of a Xilinx Virtex 2000E FPGA along with 36 MB of SRAM arranged in five separately addressable banks. This board is housed in a rackmount PC with dual 850MHz Pentium processors running the Windows 2000 operating system. This data system performs all signal extraction in hardware on the Firebird, but also runs the existing "software based" signal extraction in tandem for comparison purposes. Using a relatively small amount of the Virtex XCV2000E resources, the reconfigurable data system has demonstrated to improve performance improvement over the existing software based data system by an order of magnitude. Performance could be further improved by employing parallelism. Ground testing and a preliminary engineering test flight aboard the NASA P3 has been performed, during which the reconfigurable data system has been demonstrated to match the results of the existing data system.

Powell, Wesley

PROcess Based Diagnostics PROBE

Many of the aspects of the climate system that are of the greatest interest (e.g., the sensitivity of the system to external forcings) are emergent properties that arise via the complex interplay between disparate processes. This is also true for climate models most diagnostics are not a function of an isolated portion of source code, but rather are affected by multiple components and procedures. Thus any model-observation mismatch is hard to attribute to any specific piece of code or imperfection in a specific model assumption. An alternative approach is to identify diagnostics that are more closely tied to specific processes -- implying that if a mismatch is found, it should be much easier to identify and address specific algorithmic choices that will improve the simulation. However, this approach requires looking at model output and observational data in a more sophisticated way than the more traditional production of monthly or annual mean quantities. The data must instead be filtered in time and space for examples of the specific process being targeted.We are developing a data analysis environment called PROcess-Based Explorer (PROBE) that seeks to enable efficient and systematic computation of process-based diagnostics on very large sets of data. In this environment, investigators can define arbitrarily complex filters and then seamlessly perform computations in parallel on the filtered output from their model. The same analysis can be performed on additional related data sets (e.g., reanalyses) thereby enabling routine comparisons between model and observational data. PROBE also incorporates workflow technology to automatically update computed diagnostics for subsequent executions of a model. In this presentation, we will discuss the design and current status of PROBE as well as share results from some preliminary use cases.

PROBE

A Full-Stack Exploration of Language-Based Parallelism in Fortran 2023

This poster explores native parallel features in Fortran 2023 through the lens of supporting applications with libraries, compilers, and parallel runtimes. The language revision informally named Fortran 2008 introduced parallelism in the form of Single Program Multiple Data (SPMD) execution with two broad feature sets: (1) loop-level parallelism via do concurrent and (2) a Partitioned Global Address Space (PGAS) comprised of distributed “coarray” data structures. Fortran’s native parallelism has demonstrated high performance [1] and reduced the burden of inserting what sometimes amounts to more directives than code. Several compilers support both feature sets, typically by translating do concurrent into serial do loops annotated by parallel directives and by translating SPMD/PGAS features into direct calls to a communication library. Our research focuses primarily on two questions: (1) can the compiler’s parallel runtime library be developed in the language being compiled (Fortran) and (2) can we define an interface to the runtime that liberates compilers from being hardwired to one runtime and vice versa. We are answering these questions by developing the Parallel Runtime Interface for Fortran (PRIF) [2] and the Co-Array Fortran Framework of Efficient Interfaces to Network Environments (Caffeine) [3]. Caffeine is initially targeting adoption by LLVM Flang, a new open-source Fortran compiler developed by a broad community in industry, academia, and government labs. We are also exploring the use of these features in Inference-Engine, a deep learning library designed to facilitate neural network training and inference for high-performance computing applications written in modern Fortran.

Rasmussen, Katherine

Spaceflight optical disk recorder development

Mass memory systems based on rewriteable optical disk media are expected to play an important role in meeting the data system requirements for future NASA spaceflight missions. NASA has established a program to develop a high performance (high rate, large capacity) optical disk recorder focused on use aboard unmanned Earth orbiting platforms. An expandable, adaptable system concept is proposed based on disk drive modules and a modular controller. Drive performance goals are 10 gigabyte capacity, 300 megabit/s transfer rate, 10 exp -12 corrected bit error rate, and 150 millisec access time. This performance is achieved by writing eight data tracks in parallel on both sides of a 14 in. optical disk using two independent heads. System goals are 160 gigabyte capacity, 1.2 gigabits/s data rate with concurrent I/O, 250 millisec access time, and two to five year operating life on orbit. The system can be configured to meet various applications. This versatility is provided by the controller. The controller provides command processing, multiple drive synchronization, data buffering, basic file management, error processing, and status reporting. Technology developments, design concepts, current status including a computer model of the system and a Controller breadboard, and future plans for the Drive and Controller are presented.

Jurczyk, Stephen G.

A Low-Power High-Speed Smart Sensor Design for Space Exploration Missions

A low-power high-speed smart sensor system based on a large format active pixel sensor (APS) integrated with a programmable neural processor for space exploration missions is presented. The concept of building an advanced smart sensing system is demonstrated by a system-level microchip design that is composed with an APS sensor, a programmable neural processor, and an embedded microprocessor in a SOI CMOS technology. This ultra-fast smart sensor system-on-a-chip design mimics what is inherent in biological vision systems. Moreover, it is programmable and capable of performing ultra-fast machine vision processing in all levels such as image acquisition, image fusion, image analysis, scene interpretation, and control functions. The system provides about one tera-operation-per-second computing power which is a two order-of-magnitude increase over that of state-of-the-art microcomputers. Its high performance is due to massively parallel computing structures, high data throughput rates, fast learning capabilities, and advanced VLSI system-on-a-chip implementation.

Fang, Wai-Chi

Thermal Ablation Modeling for Silicate Materials

A thermal ablation model for silicates is proposed. The model includes the mass losses through the balance between evaporation and condensation, and through the moving molten layer driven by surface shear force and pressure gradient. This model can be applied in ablation simulations of the meteoroid or glassy Thermal Protection Systems for spacecraft. Time-dependent axi-symmetric computations are performed by coupling the fluid dynamics code, Data-Parallel Line Relaxation program, with the material response code, Two-dimensional Implicit Thermal Ablation simulation program, to predict the mass lost rates and shape change. For model validation, the surface recession of fused amorphous quartz rod is computed, and the recession predictions reasonably agree with available data. The present parametric studies for two groups of meteoroid earth entry conditions indicate that the mass loss through moving molten layer is negligibly small for heat-flux conditions at around 1 MW/cm(exp. 2).

Ablators

SIR-C/X-SAR Observations of Rain Storms

Teh SIR-C/X-sar radar observations of rain storms are the first multi-polarization and multi-frequency observations of percipitation from space. In addition to numerous, often dramatic images of severe weather systems obtained by forming a synthetic aperture in the usual side-looking attitude, several data takes were performed while the radar antennas were parallel to the ground and the radar beams were pointing at nadir. These oppoprtunities coincided with the passage of the Shuttle over Tropical Cyclone Odille in the southern Indian Ocean during the first flight, and over Typhoon Seth in the Western Pacific during the second flight. The resulting observations, or more apropriately, the resulting measurements, demonstrate for the first time the capability of a spaceborne multi-frequency multi-polarization microwave radar system to quantify precipitation rates, to detect hydrometer phase, and to classify rain type.

SIR-C

Runtime volume visualization for parallel CFD

This paper discusses some aspects of design of a data distributed, massively parallel volume rendering library for runtime visualization of parallel computational fluid dynamics simulations in a message-passing environment. Unlike the traditional scheme in which visualization is a postprocessing step, the rendering is done in place on each node processor. Computational scientists who run large-scale simulations on a massively parallel computer can thus perform interactive monitoring of their simulations. The current library provides an interface to handle volume data on rectilinear grids. The same design principles can be generalized to handle other types of grids. For demonstration, we run a parallel Navier-Stokes solver making use of this rendering library on the Intel Paragon XP/S. The interactive visual response achieved is found to be very useful. Performance studies show that the parallel rendering process is scalable with the size of the simulation as well as with the parallel computer.

Ma, Kwan-Liu

Iterative solution of large, sparse linear systems on a static data flow architecture - Performance studies

The applicability of static data flow architectures to the iterative solution of sparse linear systems of equations is investigated. An analytic performance model of a static data flow computation is developed. This model includes both spatial parallelism, concurrent execution in multiple PE's, and pipelining, the streaming of data from array memories through the PE's. The performance model is used to analyze a row partitioned iterative algorithm for solving sparse linear systems of algebraic equations. Based on this analysis, design parameters for the static data flow architecture as a function of matrix sparsity and dimension are proposed.

Reed, D. A.

Interfacing Computer Aided Parallelization and Performance Analysis

When porting sequential applications to parallel computer architectures, the program developer will typically go through several cycles of source code optimization and performance analysis. We have started a project to develop an environment where the user can jointly navigate through program structure and performance data information in order to make efficient optimization decisions. In a prototype implementation we have interfaced the CAPO computer aided parallelization tool with the Paraver performance analysis tool. We describe both tools and their interface and give an example for how the interface helps within the program development cycle of a benchmark code.

Jost, Gabriele

The role of HiPPI switches in mass storage systems: A five year prospective

New standards are evolving which provide the foundation for novel multi-gigabit per second data communication structures. The lowest layer protocols are so generalized that they encourage a wide range of application. Specifically, the ANSI High Performance Parallel Interface (HiPPI) is being applied to computer peripheral attachment as well as general data communication networks. This paper introduces the HiPPI standards suite and technology products which incorporate the standards. The use of simple HiPPI crosspoint switches to build potentially complex extended 'fabrics' is discussed in detail. Several near term applications of the HiPPI technology are briefly described with additional attention to storage systems. Finally, some related standards are mentioned which may further expand the concepts above.

Gilbert, T. A.