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NASA NTRS2020

Changes in Vegetation Phenology and Productivity in Alaska Over the Past Two Decades

Understanding trends in vegetation phenology and growing season productivity at a regional scale is important for global change studies, particularly as linkages can be made between climate shifts and the vegetation’s potential to sequester or release carbon into the atmosphere. Trends and geographic patterns of change in vegetation growth and phenology from the MODerate resolution Imaging Spectroradiometer (MODIS) satellite data sets were analyzed for the state of Alaska over the period 2000 to 2018. Phenology metrics derived from the MODIS Normalized Difference Vegetation Index (NDVI) time-series at 250 m resolution tracked changes in the total integrated greenness cover (TIN), maximum annual NDVI (MAXN), and start of the season timing (SOST) date over the past two decades. SOST trends showed significantly earlier seasonal vegetation greening (at more than one day per year) across the northeastern Brooks Range Mountains, on the Yukon-Kuskokwim coastal plain, and in the southern coastal areas of Alaska. TIN and MAXN have increased significantly across the western Arctic Coastal Plain and within the perimeters of most large wildfires of the Interior boreal region that burned since the year 2000, whereas TIN and MAXN have decreased notably in watersheds of Bristol Bay and in the Cook Inlet lowlands of southwestern Alaska, in the same regions where earlier-trending SOST was also detected. Mapping results from this MODIS time-series analysis have identified a new database of localized study locations across Alaska where vegetation phenology has recently shifted notably, and where land cover types and ecosystem processes could be changing rapidly.

Vegetation↗

DOE OSTI2024

Leaf phenology data at The Morton Arboretum Forestry Plots 2019-2023

We are collecting long-term leaf phenology data at The Morton Arboretum to determine seasonal patterns of leaf production in trees. This data on leaf phenology will be integrated with other ongoing data streams to create a connection between above- and below-ground tree processes. This data package contains raw and smooth outputs from phenology data, as well as extracted phenophase dates (i.e., start, peak, and end of season): the raw and smooth outputs from the PhenoCam GUI can be found in the "leafRaw.csv" and "leafSmooth.csv" files, respectively, and the extracted phenophase dates can be found in the "leafPhenophaseDates2019-2023.csv" file. Extracted phenophase dates for evergreen species in 2023 are currently unavailable, and the files will be updated once they are extracted. Additional information on units and other file-level metadata can be found within each data file's respective data dictionary, and metadata for each of the 23 surveyed plots can be found within the "Location_metadata.csv" file. While the "leafRaw.csv" and the "leafSmooth.csv" files contain all data for all species, the "leafPhenophaseDates2019-2023.csv" file currently excludes the dates for evergreen species in 2023. Another version of the file will be added as those dates are extracted.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Methodological challenges and new perspectives of shifting vegetation phenology in eddy covariance data

While numerous studies report shifts in vegetation phenology, in this regard eddy covariance (EC) data, despite its continuous high-frequency observations, still requires further exploration. Furthermore, there is no general consensus on optimal methodologies for data smoothing and extracting phenological transition dates (PTDs). Here, we revisit existing methodologies and present new prospects to investigate phenological changes in gross primary productivity (GPP) from EC measurements. First, we present a smoothing technique of GPP time series through the derivative of its smoothed annual cumulative sum. Second, we calculate PTDs and their trends from a commonly used threshold method that identifies days with a fixed percentage of the annual maximum GPP. A systematic analysis is performed for various thresholds ranging from 0.1 to 0.7. Lastly, we examine the relation of PTDs trends to trends in GPP across the years on a weekly basis. Results from 47 EC sites with long time series (> 10 years) show that advancing trends in start of season (SOS) are strongest at lower thresholds but for the end of season (EOS) at higher thresholds. Moreover, the trends are variable at different thresholds for individual vegetation types and individual sites, outlining reasonable concerns on using a single threshold value. Relationship of trends in PTDs and weekly GPP reveal association of advanced SOS and delayed EOS to increase in immediate primary productivity, but not to the trends in overall seasonal productivity. Drawing on these analyses, we emphasise on abstaining from subjective choices and investigating relationship of PTDs trend to finer temporal trends of GPP. Our study examines existing methodological challenges and presents approaches that optimize the use of EC data in identifying vegetation phenological changes and their relation to carbon uptake.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2000

Satellite Observation of El Nino Effects on Amazon Forest Phenology and Productivity

Climate variability may affect the functioning of Amazon moist tropical forests, and recent modeling analyses suggest that the carbon dynamics of the region vary interannually in response to precipitation and temperature anomalies. However, due to persistent orbital and atmospheric artifacts in the satellite record, remote sensing observations have not provided quantitative evidence that climate variation affects Amazon forest phenology or productivity, We developed a method to minimize and quantify non-biological artifacts in NOAA AVHRR satellite data, providing a record of estimated forest phenological variation from 1982-1993. The seasonal Normalized Difference Vegetation Index (NDVI) amplitude (a proxy for phenology) increased throughout much of the basin during El Nino periods when rainfall was anomalously low. Wetter La Nina episodes brought consistently smaller NDVI amplitudes. Using radiative transfer and terrestrial biogeochemical models driven by these satellite data, we estimate that canopy-energy absorption and net primary production of Amazon forests varied interannually by as much as 21% and 18%, respectively. These results provide large-scale observational evidence for interannual sensitivity to El Nino of plant phenology and carbon flux in Amazon forests.

Asner, Gregory P.↗

NASA NTRS2008

Integration for Airborne Dust Prediction Systems and Vegetation Phenology to Track Pollen for Asthma Alerts in Public Health Decision Support Systems

The objective of the program is to assess the feasibility of combining a dust transport model with MODIS derived phenology to study pollen transport for integration with a public health decision support system. The use of pollen information has specifically be identified as a critical need by the New Mexico State Health department for inclusion in the Environmental Public Health Tracking (EPHT) program. Material and methods: Pollen can be transported great distances. Local observations of plan phenology may be consistent with the timing and source of pollen collected by pollen sampling instruments. The Dust REgional Atmospheric Model (DREAM) is an integrated modeling system designed to accurately describe the dust cycle in the atmosphere. The dust modules of the entire system incorporate the state of the art parameterization of all the major phases of the atmospheric dust life such as production, diffusion, advection, and removal. These modules also include effects of the particles size distribution on aerosol dispersion. The model was modified to use pollen sources instead of dust. Pollen release was estimated based on satellite-derived phenology of key plan species and vegetation communities. The MODIS surface reflectance product (MOD09) provided information on the start of the plant growing season, growth stage, and pollen release. The resulting deterministic model is useful for predicting and simulating pollen emission and downwind concentration to study details of phenology and meteorology and their dependencies. The proposed linkage in this project provided critical information on the location timing and modeled transport of pollen directly to the EPHT> This information is useful to support the centers for disease control and prevention (CDC)'s National EPHT and the state of New Mexico environmental public health decision support for asthma and allergies alerts.

Luvall, J. C.↗

NASA NTRS2011

Integration of Dust Prediction Systems and Vegetation Phenology to Track Pollen for Asthma Alerts in Public Health

Pollen can be transported great distances. Van de Water et. al., 2003 reported Juniperus pollen, a significant aeroallergen was transported 200-600 km. Hence local observations of plant phenology may not be consistent with the timing and source of pollen collected by pollen sampling instruments. The DREAM (Dust REgional Atmospheric Model, Yin 2007) is a verified model for atmospheric dust transport modeling using MODIS data products to identify source regions and quantities of dust (Yin 2007). The use of satellite data products for studying phenology is well documented (White and Nemani 2006). We are modifying the DREAM model to incorporate pollen transport. The linkages already exist with DREAM through PHAiRS (Public Health Applications in remote Sensing) to the public health community. This linkage has the potential to fill this data gap so that health effects of pollen can better be tracked for linkage with health outcome data including asthma, respiratory effects, myocardial infarction, and lost work days. DREAM is based on the SKIRON/Eta modeling system and the Eta/NCEP regional atmospheric model. The dust modules of the entire system incorporate the state of the art parameterizations of all the major phases of the atmospheric dust life such as production, diffusion, advection, and removal. These modules also include effects of the particle size distribution on aerosol dispersion. The dust production mechanism is based on the viscous/turbulent mixing, shear-free convection diffusion, and soil moisture. In addition to these sophisticated mechanisms, very high resolution databases, including elevation, soil properties, and vegetation cover are utilized. The DREAM model was modified to use pollen sources instead of dust (PREAM). Pollen release will be estimated based on satellite-derived phenology of Juniperus spp. communities. The MODIS surface reflectance product (MOD09) will provide information on the start of the plant growing season, growth stage, peak greenness, dry-down and pollen release. Ground based observational records of pollen release timing and quantities will be used as verification. Techniques developed using MOD09 surface reflectance products will be directly applicable to the next generation sensors such as VIIRS. The resulting deterministic model for predicting and simulating pollen emission and downwind concentration to study details of phenology and meteorology and their dependencies. This information will be used to support the Centers for Disease Control and Prevention (CDC)'s National Environmental Public Health Tracking Program (EPHT) and the State of New Mexico environmental public health decision support for asthma and allergies alerts

Luvall, Jeffrey C.↗

NASA NTRS2013

Hydroclimatic Controls on the Means and Variability of Vegetation Phenology and Carbon Uptake

Long-term, global offline (land-only) simulations with a dynamic vegetation phenology model are used to examine the control of hydroclimate over vegetation-related quantities. First, with a control simulation, the model is shown to capture successfully (though with some bias) key observed relationships between hydroclimate and the spatial and temporal variations of phenological expression. In subsequent simulations, the model shows that: (i) the global spatial variation of seasonal phenological maxima is controlled mostly by hydroclimate, irrespective of distributions in vegetation type, (ii) the occurrence of high interannual moisture-related phenological variability in grassland areas is determined by hydroclimate rather than by the specific properties of grassland, and (iii) hydroclimatic means and variability have a corresponding impact on the spatial and temporal distributions of gross primary productivity (GPP).

GPP↗

NASA NTRS2015

Variability of Phenology and Fluxes of Water and Carbon with Observed and Simulated Soil Moisture in the Ent Terrestrial Biosphere Model (Ent TBM Version 1.0.1.0.0)

The Ent Terrestrial Biosphere Model (Ent TBM) is a mixed-canopy dynamic global vegetation model developed specifically for coupling with land surface hydrology and general circulation models (GCMs). This study describes the leaf phenology submodel implemented in the Ent TBM version 1.0.1.0.0 coupled to the carbon allocation scheme of the Ecosystem Demography (ED) model. The phenology submodel adopts a combination of responses to temperature (growing degree days and frost hardening), soil moisture (linearity of stress with relative saturation) and radiation (light length). Growth of leaves, sapwood, fine roots, stem wood and coarse roots is updated on a daily basis. We evaluate the performance in reproducing observed leaf seasonal growth as well as water and carbon fluxes for four plant functional types at five Fluxnet sites, with both observed and prognostic hydrology, and observed and prognostic seasonal leaf area index. The phenology submodel is able to capture the timing and magnitude of leaf-out and senescence for temperate broadleaf deciduous forest (Harvard Forest and Morgan- Monroe State Forest, US), C3 annual grassland (Vaira Ranch, US) and California oak savanna (Tonzi Ranch, US). For evergreen needleleaf forest (Hyytiäla, Finland), the phenology submodel captures the effect of frost hardening of photosynthetic capacity on seasonal fluxes and leaf area. We address the importance of customizing parameter sets of vegetation soil moisture stress response to the particular land surface hydrology scheme. We identify model deficiencies that reveal important dynamics and parameter needs.

Soil moisture↗

NASA NTRS2015

Interactive Vegetation Phenology, Soil Moisture, and Monthly Temperature Forecasts

The time scales that characterize the variations of vegetation phenology are generally much longer than those that characterize atmospheric processes. The explicit modeling of phenological processes in an atmospheric forecast system thus has the potential to provide skill to subseasonal or seasonal forecasts. We examine this possibility here using a forecast system fitted with a dynamic vegetation phenology model. We perform three experiments, each consisting of 128 independent warm-season monthly forecasts: 1) an experiment in which both soil moisture states and carbon states (e.g., those determining leaf area index) are initialized realistically, 2) an experiment in which the carbon states are prescribed to climatology throughout the forecasts, and 3) an experiment in which both the carbon and soil moisture states are prescribed to climatology throughout the forecasts. Evaluating the monthly forecasts of air temperature in each ensemble against observations, as well as quantifying the inherent predictability of temperature within each ensemble, shows that dynamic phenology can indeed contribute positively to subseasonal forecasts, though only to a small extent, with an impact dwarfed by that of soil moisture.

Seasonal Forecasting↗

NASA NTRS2020

Bhutan Water Resources Tech Paper: Comparing Precipitation, Temperature, and Phenology Data Trends in Bhutan to Assist the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) Project

Himalayan countries, including Bhutan, have become vulnerable to warming trends which result in increasing temperature and variable rainfall and snowfall. By combining phenological and meteorological data, Earth observation platforms and sensors were used to assess trends in precipitation, temperature, and vegetation phenology in Bhutan from 1996 through 2017. This project studied precipitation using Climate Hazards Center Infrared Precipitation with Station data, analyzed temperature using the Famine Early Warning System Network Land Data Assimilation System, incorporated elevation data from the Shuttle Radar Topography Mission, and assessed vegetation phenology using Aqua and Terra Moderate Resolution Imaging Spectroradiometer (MODIS) to evaluate climate variability and its effects on Bhutan. In situ temperature and precipitation data were also collected from the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) project and Bhutan’s National Center for Hydrology and Meterology. Modeled and in situ data showed similar trends in precipitation and temperature for the Thimpu, Chhukha, and Gasa regions. Aqua and Terra MODIS phenology data were variable from year to year. However, the data suggested a late onset of spring green up. Partners at the Bhutan Foundation and locally in Bhutan can use this information to better understand and monitor climate variability and replicate these methods for future analysis.

Kinley Dorji↗

NASA NTRS2020

Bhutan Water Resources Project Summary - Comparing Precipitation, Temperature, and Phenology Data Trends in Bhutan to Assist the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) Project

DEVELOP Project Summary↗

NASA NTRS2021

Colorado River Basin Water Resources: Pairing Phenology Citizen Science Observations with NASA Earth Observations to Monitor Riparian Vegetation

Native plant species in the Colorado River Basin are currently threatened by non-native species that are changing resource competition dynamics. Monitoring native species is essential for understanding changes in plant health throughout the year as well as how species’ distributions change inter-annually. However, current monitoring of species is limited to local efforts and cannot be efficiently conducted across more extensive regions of the basin. Project partners, including the USA National Phenology Network, United States Geological Survey, and Educating Children Outdoors, provided data and on-the-ground expertise to assist the project. NASA Earth observations, including Landsat 8 Operational Land Imager (OLI), Aqua and Terra Moderate Resolution Imaging Spectroradiometer (MODIS), and Sentinel-2 MultiSpectral Instrument (MSI) from the European Space Agency, provided remote sensing data that covers the large spatial extent of the basin. This study combined both data sources over the study period of 2013 – 2019 and explored the relationship between on-the-ground phenology observations and remotely sensed phenology signals. The team found that pairing the datasets required spatial coordinates to be accurately logged and that it was necessary to have consistent observations throughout the year by citizen scientists. The team found promising relationships between phenology observations and the two vegetation indices, normalized difference vegetation index (NDVI) and enhanced vegetation index (EVI), when study locations were in an area with a high proportion of vegetation within a satellite pixel. The results and methods outlined in this study create new opportunities to leverage remote sensing alongside citizen science data for widespread monitoring of non-native species.

Tyler Pantle↗

NASA NTRSDate not supplied

Using Earth Observations to Analyze Vegetation Phenology and Climatology in Bhutan to Identify Forest Disturbance

Changes in climate in the Himalayan region cause variability in temperature, precipitation, and phenology. It can also impact the health of coniferous forest ecosystems including increased damage due to aggressive forest pests. Forest disturbance from bark beetle is a major concern in Bhutan, sometimes causing extensive tree mortality to pine and spruce forests. Climatological trends and changes in vegetation phenology were analyzed and incorporated into a tool in Google Earth Engine that identified patches of forest disturbance in Bhutan. Preprocessed phenology and meteorological data from the Advanced Very High-Resolution Radiometer (AVHRR) and Terra and Aqua Moderate Resolution Imaging Spectroradiometer (MODIS), along with Climate Hazards Center Infrared Precipitation with Station (CHIRPS), Famine Early Warning System Network Land Data Assimilation System (FLDAS), Sentinel-2 Multispectral Instrument (MSI), and Landsat 5 Thematic Mapper (TM), Landsat 7 Enhanced Thematic Mapper (ETM)+, and Landsat 8 Operational Land Imager (OLI) were used within the tool. Changes in temperature, precipitation, and phenology were analyzed throughout Bhutan, and forest disturbance caused by bark beetle was investigated in two districts of the country

Tashi Choden↗

DOE OSTI2022

SPRUCE Vegetation Phenology in Experimental Plots from Phenocam Imagery, 2015-2021

This data set consists of PhenoCam data from the SPRUCE experiment from the beginning of whole ecosystem warming (Hanson et al. 2017) in August 2015 through March 31 of 2022, with start- and end-of-season phenological transition dates derived through the end of autumn 2021. Digital cameras, or phenocams, installed in each SPRUCE enclosure track seasonal variation in vegetation “greenness”, a proxy for vegetation phenology and associated physiological activity. Three separate regions of interest (ROIs) were defined for each camera field of view, corresponding to different vegetation types and demarcating (1) Picea trees (vegetation type EN, for evergreen needleleaf); (2) Larix trees (vegetation type DN, for deciduous needleleaf); and (3) the mixed shrub layer (vegetation type SH). User Note: This dataset supersedes previous versions of SPRUCE Vegetation Phenology in Experimental Plots from Phenocam Imagery. A list of previous versions can be found in the Related Datasets section of the user guide.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Experimental warming differentially affects vegetative and reproductive phenology of tundra plants

Rapid climate warming is altering Arctic and alpine tundra ecosystem structure and function, including shifts in plant phenology. While the advancement of green up and flowering are well-documented, it remains unclear whether all phenophases, particularly those later in the season, will shift in unison or respond divergently to warming. Here, we present the largest synthesis to our knowledge of experimental warming effects on tundra plant phenology from the International Tundra Experiment. We examine the effect of warming on a suite of season-wide plant phenophases. Results challenge the expectation that all phenophases will advance in unison to warming. Instead, we find that experimental warming caused: (1) larger phenological shifts in reproductive versus vegetative phenophases and (2) advanced reproductive phenophases and green up but delayed leaf senescence which translated to a lengthening of the growing season by approximately 3%. Patterns were consistent across sites, plant species and over time. The advancement of reproductive seasons and lengthening of growing seasons may have significant consequences for trophic interactions and ecosystem function across the tundra.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Using long‐term data from a whole ecosystem warming experiment to identify best spring and autumn phenology models

Abstract Predicting vegetation phenology in response to changing environmental factors is key in understanding feedbacks between the biosphere and the climate system. Experimental approaches extending the temperature range beyond historic climate variability provide a unique opportunity to identify model structures that are best suited to predicting phenological changes under future climate scenarios. Here, we model spring and autumn phenological transition dates obtained from digital repeat photography in a boreal Picea ‐ Sphagnum bog in response to a gradient of whole ecosystem warming manipulations of up to +9°C, using five years of observational data. In spring, seven equally best‐performing models for Larix utilized the accumulation of growing degree days as a common driver for temperature forcing. For Picea , the best two models were sequential models requiring winter chilling before spring forcing temperature is accumulated. In shrub, parallel models with chilling and forcing requirements occurring simultaneously were identified as the best models. Autumn models were substantially improved when a CO 2 parameter was included. Overall, the combination of experimental manipulations and multiple years of observations combined with variation in weather provided the framework to rule out a large number of candidate models and to identify best spring and autumn models for each plant functional type.

Schädel, Christina↗

DOE OSTI2025

Migrating Populus with climate change: Phenology, coppice management, cold spell susceptibility, leaf dynamics, and biomass production

Understanding the phenology and productivity of Populus species is crucial for effective management and conservation strategies amid climate change. We investigated leaf budbreak timing, susceptibility to cold damage, leaf dynamics, and biomass production of 168 Populus genotypes with diverse provenances in the southeastern United States. Our study revealed significant variation in budbreak timing across different taxa and years, with genotypes inheriting traits adapted to their parents’ local climates. Temperature emerged as a key factor triggering budbreak, while leaf development depended on other environmental cues such as photoperiod. Notably, budbreak occurred approximately 20 days earlier in 2023 compared to 2022 due to higher accumulated degree days (ADDs). Short-rotation-coppice (SRC) management delayed budbreak by five to ten days. Cold damage was significant in 2023, particularly for genotypes from northern provenances and those with P. maximowiczii parentage. Severe damage was also observed in eastern cottonwood ( Populus deltoides × Populus deltoides (D × D)) genotypes, despite most having southeastern US parentages. Leaf dynamics, including leaf duration and leaf area index (LAI), varied across taxa and sites, with earlier budbreak correlating with extended growing seasons and increased LAI. Biomass production was intricately linked to phenological events, with earlier budbreak leading to increased biomass production and greater susceptibility to cold damage. Our findings highlight the importance of genetics, environment, and coppicing management in understanding and managing Populus phenology and biomass production. These insights provide valuable guidance for developing effective breeding, conservation, and management strategies for Populus species in the context of climate change.

Accumulated degree days (ADDs)↗

DOE OSTI2022

A phenology- and trend-based approach for accurate mapping of sea-level driven coastal forest retreat

The rapid replacement of upland forest by encroaching marshland is a striking manifestation of global sea-level rise (SLR). Timely and high-resolution information on the location and extent of transition forest (the ecotone between upland forest and marsh where tree mortality due to seawater intrusion begins) is fundamental to understanding the processes and patterns of SLR-driven landscape reorganization. Despite its significance, accurate characterization of salt-impacted transition forest remains challenging due to the complexity of coastal environments, scarcity of ground-truth data, and the lack of effective mapping algorithms. Here we use the full archive of Landsat images between 1984 and 2021 to investigate the spectral, temporal, and phenological characteristics of transition forest, and develop a robust framework for monitoring coastal vegetation shifts in the mid-Atlantic U.S., a global SLR hotspot. Here, we found that transition forest exhibits strong negative NDVI trends and a deviation of land surface phenology from marsh and upland forest that distinguishes itself from surrounding vegetation. By integrating temporal trends and land surface phenology, our results demonstrate superior discrimination between marsh and coastal forests to existing map products (e.g. NOAA Coastal Change Analysis Program, National Land Cover Database) that allows a reliable identification of the coastal treeline. We applied the approach to map regional land cover in 1985, 2000 and 2020 (overall classification accuracy >92%) and found that the area of coastal forest decreased by 22.0% from 1985 to 2020, the majority of which transitioned to marshland (92.3%, 5.3 × 10 3 ha). Based upon fine-scale patterns of coastal transgression, we created a practical workflow for spatially explicit quantification of forest retreat rates. Concurrent with rising sea level, coastal forests migrated upslope from 0.63 (± 0.27) m above sea level in 1985 to 0.78 (± 0.32) m above sea level in 2020, and horizontal forest retreat rates accelerated from 3.1 (range of 0–36) m yr -1 during 1985–2000 to 4.7 (0–55) m yr -1 during 2001–2020. As SLR continues to accelerate, our study may serve as a scalable solution for consistent tracking of coastal landscape evolution that is urgently needed for sustainable forest and wetland management.

54 ENVIRONMENTAL SCIENCES↗