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DOE OSTI2015

A thermodynamical analysis of rf current drive with fast electrons

The problem of rf current drive (CD) by pushing fast electrons with high-parallel-phase-velocity waves, such as lower-hybrid (LH) or electron-cyclotron (EC) waves, is revisited using the first and second laws, the former to retrieve the well-known one-dimensional (1D) steady-state CD efficiency, and the latter to calculate a lower bound for the rate of entropy production when approaching steady state. The laws of thermodynamics are written in a form that explicitly takes care of frictional dissipation and are thus applied to a population of fast electrons evolving under the influence of a dc electric field, rf waves, and collisions while in contact with a thermal, Maxwellian reservoir with a well-defined temperature. Besides the laws of macroscopic thermodynamics, there is recourse to basic elements of kinetic theory only, being assumed a residual dc electric field and a strong rf drive, capable of sustaining in the resonant region, where waves interact with electrons, a raised fast-electron tail distribution, which becomes an essentially flat plateau in the case of the 1D theory for LHCD. Within the 1D model, particularly suited for LHCD as it solely retains fast-electron dynamics in velocity space parallel to the ambient magnetic field, an H theorem for rf CD is also derived, which is written in different forms, and additional physics is recovered, such as the synergy between the dc and rf power sources, including the rf-induced hot conductivity, as well as the equation for electron-bulk heating. As much as possible 1D results are extended to 2D, to account for ECCD by also considering fast-electron velocity-space dynamics in the direction perpendicular to the magnetic field, which leads to a detailed discussion on how the definition of an rf-induced conductivity may depend on whether one works at constant rf current or power. Moreover, working out the collisional dissipated power and entropy-production rate written in terms of the fast-electron distribution, it is shown that the well-known formula for the steady-state CD efficiency, usually obtained from the first law in the form of power balance between the external sources and collisional losses, emerges as a lower bound for that CD figure of merit, in what can be interpreted as an instance of the second law.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2015

Studies of RF sheaths and diagnostics on IShTAR

IShTAR (Ion cyclotron Sheath Test ARrangement) is a linear magnetised plasma test facility for RF sheaths studies at the Max-Planck-Institut für Plasmaphysik in Garching. In contrast to a tokamak, a test stand provides more liberty to impose the parameters and gives better access for the instrumentation and antennas. The project will support the development of diagnostic methods for characterising RF sheaths and validate and improve theoretical predictions. The cylindrical vacuum vessel has a diameter of 1 m and is 1.1 m long. The plasma is created by an external cylindrical plasma source equipped with a helical antenna that has been designed to excite the m=1 helicon mode. In inductive mode, plasma densities and electron temperatures have been characterised with a planar Langmuir probe as a function of gas pressure and input RF power. A 2D array of RF compensated Langmuir probes and a spectrometer are planned. A single strap RF antenna has been designed; the plasma-facing surface is aligned to the cylindrical plasma to ease the modelling. The probes will allow direct measurements of plasma density profiles in front of the RF antenna, and thus a detailed study of the density modifications induced by RF sheaths, which influences the coupling. The RF antenna frequency has been chosen to study different plasma wave interactions: the accessible plasma density range includes an evanescent and propagative behaviour of slow or fast waves, and allows the study of the effect of the lower hybrid resonance layer.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2024

Multiple Beam Triode Driven RF Sources for Accelerator Applications Phase I Final Report

Calabazas Creek Research, Inc, (CCR), in collaboration with Microwave Power Products, Inc. (MPP), formerly Communications & Power Industries, LLC (CPI,) and JP Accelerator Works, Inc. (JPAW), embarked on a program to develop multiple beam triodes to produce RF power from 350 – 800 MHz with an average power exceeding 200 kW. The effort was motivated by the performance of a triode-based RF source which produces 25 kW of UHF power at 90% efficiency. The CCR effort focused on implementing this technology into a multiple beam device to increase the output power while retaining the low cost, compact size, and high efficiency. The program performed extensive simulations indicating that the goals could be achieved, and a prototype multiple beam triode was built, baked, and tested. Unfortunately, a grid to cathode short terminated the testing before the tube could generate RF power. Nevertheless, the effort demonstrated that a multiple beam triode could be designed, built, baked, and energized to high voltage. The multiple beam triode used oxide cathodes, which are only capable of pulsed operation. The multiple beam triode will be rebuilt using dispenser cathodes, which will allow high duty or continuous operation. The grids were also modified to be more robust to avoid previous issues. The MB triode will provide the beam power for RF generation. The RF is generated by surrounding the triode with input and output cavities to convert beam power to RF power. RF cavities to generate 200 kW CW at 350-450 MHz using the MB triode with dispenser cathodes was assembled during the program. The next Phase of this effort is to assemble the multiple beam triode using the subassemblies built in the Phase I program and test with the RF cavities. The Phase I program also initiated design of a higher frequency, higher power multiple beam triode. That design is forecast to produce approximately 500 kW CW from 350 - 500 MHz.

43 PARTICLE ACCELERATORS↗

DOE OSTI2016

“Virtual IED sensor” at an rf-biased electrode in low-pressure plasma

Energy distribution and the flux of the ions coming on a surface are considered as the key-parameters in anisotropic plasma etching. Since direct ion energy distribution (IED) measurements at the treated surface during plasma processing are often hardly possible, there is an opportunity for virtual ones. This work is devoted to the possibility of such indirect IED and ion flux measurements at an rf-biased electrode in low-pressure rf plasma by using a “virtual IED sensor” which represents “in-situ” IED calculations on the absolute scale in accordance with a plasma sheath model containing a set of measurable external parameters. The “virtual IED sensor” should also involve some external calibration procedure. Applicability and accuracy of the “virtual IED sensor” are validated for a dual-frequency reactive ion etching (RIE) inductively coupled plasma (ICP) reactor with a capacitively coupled rf-biased electrode. The validation is carried out for heavy (Ar) and light (H{sub 2}) gases under different discharge conditions (different ICP powers, rf-bias frequencies, and voltages). An EQP mass-spectrometer and an rf-compensated Langmuir probe (LP) are used to characterize plasma, while an rf-compensated retarded field energy analyzer (RFEA) is applied to measure IED and ion flux at the rf-biased electrode. Besides, the pulsed selfbias method is used as an external calibration procedure for ion flux estimating at the rf-biased electrode. It is shown that pulsed selfbias method allows calibrating the IED absolute scale quite accurately. It is also shown that the “virtual IED sensor” based on the simplest collisionless sheath model allows reproducing well enough the experimental IEDs at the pressures when the sheath thickness s is less than the ion mean free path λ{sub i} (s < λ{sub i}). At higher pressure (when s > λ{sub i}), the difference between calculated and experimental IEDs due to ion collisions in the sheath is observed in the low energy range. The effect of electron impact ionization in the sheath on the origin and intensity of low-energy peaks in IED is discussed compared to ion charge-exchange collisions. Obviously, the extrapolation of the “virtual IED sensor” approach to higher pressures requires developing some other sheath models, taking into account both ion and electron collisions and probably including even a model of the whole plasma volume instead of plasma sheath one.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2024

Microscopic examination of rf-cavity-quality niobium films through local nonlinear microwave response

The performance of superconducting radio-frequency (SRF) cavities is sometimes limited by local defects. To investigate the rf properties of these local defects, especially those that nucleate rf magnetic vortices, a near-field magnetic microwave microscope is employed. Local third-harmonic response ( P 3 f ) and its temperature dependence and rf power dependence are measured for one Nb / Cu film grown by direct current magnetron sputtering (DCMS) and six Nb / Cu films grown by high-power impulse magnetron sputtering (HiPIMS) with systematic variation of deposition conditions. Five out of the six HiPIMS Nb / Cu films show a strong third-harmonic response that is likely coming from rf vortex nucleation due to a low- T c surface defect with a transition temperature between 6.3 and 6.8 K, suggesting that this defect is a generic feature of air-exposed HiPIMS Nb / Cu films. A phenomenological model of surface-defect grain boundaries hosting a low- T c impurity phase is introduced and studied with time-dependent Ginzburg-Landau (TDGL) simulations of probe-sample interaction to better understand the measured third-harmonic response. The simulation results show that the third-harmonic response of rf vortex nucleation caused by surface defects exhibits the same general features as the data, including peaks in third-harmonic response with temperature, and their shift and broadening with higher microwave amplitude. We find that the parameters of the phenomenological model (the density of surface defects that nucleate rf vortices and the depth an rf vortex travels through these surface defects) vary systematically with film deposition conditions. From the point of view of these two properties, the Nb / Cu film that is most effective at reducing the nucleation of rf vortices associated with surface defects can be identified. Published by the American Physical Society 2024

Wang, Chung-Yang (ORCID:0000000184299633)↗

DOE OSTI2024

DIRECT RF SAMPLING BASED LLRF CONTROL SYSTEM FOR C-BAND LINEAR ACCELERATOR

Low Level RF (LLRF) control systems of linear accel- erators (LINACs) are typically implemented with hetero- dyne based architectures, which have complex analog RF mixers for up and down conversion. The Gen 3 Radio Fre- quency System-on-Chip (RFSoC) device from AMD Xilinx integrates data converters with maximum RF frequency of 6 GHz. This enables direct RF sampling of C-band LLRF signal typically operated at 5.712 GHz without any analogue mixers, which can significantly simplify the system architec- ture. The data converters sample RF signals in higher order Nyquist zones and then up or down convert digitally by the integrated data path in RFSoC. The closed-loop feedback control firmware implemented in FPGA integrated in RF- SoC can process the base-band signal from the ADC data path and calculate the updated phase and amplitude to be up- mixed by the DAC data path. We have developed a C-band LLRF control RFSoC platform with direct RF sampling, which targets Cool Copper Collider (𝐶3) and other C or S band LINAC research and development projects. In this paper, the architecture of the platform will be described. We have optimized the configuration of the data converter and characterized performance of them with RF pulses. The test results for some of the key performance parameters for the LLRF platform with our custom solid-state amplifier, such as phase and amplitude stability, will be discussed in this paper.

Liu, C↗

DOE OSTI2023

Advancements in High-Q development for novel medium-velocity 644 MHz 5-cell elliptical superconducting RF cavities for continuous-wave operation in heavy-ion linacs

The Facility for Rare Isotope Beams is a world-leading center for experimental nuclear physics research, and relies on a first-in-kind superconducting RF driver linac to supply 400 kW beams of a uniquely large range of particles, from protons through the heaviest uranium ions. The FRIB400 project proposes to double the end energy of the current superconducting FRIB linac for the heaviest uranium ions from 200 MeV per nucleon (MeV/u) to 400 MeV/u, which equates to approximately 1 GeV for protons. The increased rare isotope production from higher-energy drive beams would deliver new and exciting capabilities to FRIB users, which include extending the facility's reach along the neutron drip-line, greatly increasing the facility's rare isotope yield, and significantly improving the precision of parameter measurements for the nuclear matter equation of state, which is a particularly timely complement to the recent advent of multi-messenger astronomy, and the study of neutron star mergers. The unique set of design parameters defined by the 400 MeV/u (uranium) energy goal, the physical size, continuous-wave operation, and cryogenic capacity of the extant facilities at FRIB, requires development of a first-in-kind beta = v/c = 0.65, 644 MHz 5-cell elliptical superconducting RF (SRF) cavity, with field-leading efficiency, measured by the cavity's intrinsic quality factor, Q_0. The field of SRF has recently experienced a very active period of development, which demonstrated the potential to raise the Q_0 of 1.3 GHz cavities by factors of two to three or more. In addition to uncovering fascinating new properties of the fundamental physics of superconducting RF phenomena, these improvements suggest substantial improvements could be made over the minimum Q_0 of the proposed FRIB400 upgrade SRF cavities, if these new techniques can be adapted to the beta = 0.65, 644 MHz regime. This work presents the first validation of the the novel beta = 0.65, 644 MHz 5-cell elliptical superconducting RF cavity design, and the first results of both conventional and advanced RF surface preparation techniques. In particular, this work focuses on two recently-developed high-Q_0 recipes: N-doping, and furnace baking, setting the current world-record Q_0 for this type of resonant cavity at 3.8 x 10^10 at the FRIB400 operating gradient of 17.5 MV/m. We also find evidence that these results may be further improved upon, and make the case for further RF surface preparation recipe optimization. We then pair these high-power RF investigations with techniques borrowed from material science to try to better understand the ways in which specific properties of the niobium material, such as grain structure and superconducting flux pinning force, can be related to its superconducting RF performance. These experiments better elucidate the effects of high-temperature annealing on niobium samples, which suggest methods of further optimizing cavity flux expulsion and thus SRF performance.Read

McGee, Kellen E.↗

NASA NTRS2007

RF and Optical Communications: A Comparison of High Data Rate Returns From Deep Space in the 2020 Timeframe

As NASA proceeds with plans for increased science data return and higher data transfer capacity for science missions, both RF and optical communications are viable candidates for significantly higher-rate communications from deep space to Earth. With the inherent advantages, smaller apertures and larger bandwidths, of optical communications, it is reasonable to expect that at some point in time and combination of increasing distance and data rate, the rapidly emerging optical capabilities would become more advantageous than the more mature and evolving RF techniques. This paper presents a comparison of the burden to a spacecraft by both RF and optical communications systems for data rates of 10, 100, and 1000 Mbps and large distances. Advanced technology for RF and optical communication systems have been considered for projecting capabilities in the 2020 timeframe. For the comparisons drawn, the optical and RF ground terminals were selected to be similar in cost. The RF system selected is composed of forty-five 12-meter antennas, whereas the selected optical system is equivalent to a 10-meter optical telescope. Potential differences in availability are disregarded since the focus of this study is on spacecraft mass and power burden for high-rate mission data, under the assumption that essential communications will be provided by low-rate, high availability RF. For both the RF and optical systems, the required EIRP, for a given data rate and a given distance, was achieved by a design that realized the lowest possible communications subsystem mass (power + aperture) consistent with achieving the lowest technology risk. A key conclusion of this paper is that optical communications has great potential for high data rates and distances of 2.67 AU and beyond, but requires R&D and flight demonstrations to prove out technologies.

Williams, W. Dan↗

DOE OSTI2024

On forced RF generation of CW magnetrons for accelerators

CW magnetrons, initially developed for industrial RF heaters, were suggested to power RF cavities of superconducting accelerators due to their higher efficiency and lower cost than traditionally used klystrons, IOTs or solid-state amplifiers. RF amplifiers driven by a master oscillator serve as coherent RF sources. CW magnetrons are regenerative RF generators with a huge regenerative gain. This causes regenerative instability with a quite large noise when a magnetron operates with the anode voltage above the threshold of self-excitation. Traditionally, an injection locking by a small signal is used for stabilization of magnetrons. In this case CW magnetrons with the injection-locked oscillations generate a high level of noise. This may preclude use of standard CW magnetrons in this operating mode in the Superconducting RF (SRF) accelerators. In this article we described a method developed for forced RF generation of CW magnetrons when the magnetron startup is provided by the injected forcing signal and the regenerative noise is suppressed. The method is most suitable for powering high Q-factor cavities.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2015

Maintenance and operation procedure, and feedback controls of the J-PARC RF-driven H{sup −} ion source

In order to satisfy the Japan Proton Accelerator Research Complex (J-PARC) second stage requirements of an H{sup −} ion beam of 60mA within normalized emittances of 1.5πmm•mrad both horizontally and vertically, a flat top beam duty factor of 1.25% (500μs×25Hz) and a life-time of longer than 1month, the J-PARC cesiated RF-driven H{sup −} ion source was developed by using an internal-antenna developed at the Spallation Neutron Source (SNS). The maintenance and operation procedure to minimize the plasma chamber (PCH) replacement time on the beam line, which is very important to maximize the J-PARC beam time especially for an antenna failure, is presented in this paper. The PCH preserved by filling argon (Ar) gas inside after pre-conditioning including pre-cesiation to produce the required beam at a test-stand successfully produced the required beam on the beam line with slight addition of cesium (Cs). The methods of the feedback controls of a 2MHz-RF-matching, an H{sup −} ion beam intensity and the addition of Cs are also presented. The RF-matching feedback by using two vacuum variable capacitors (VVCs) and RF-frequency shift produced the almost perfect matching with negligibly small reflected RF-power. The H{sup −} ion beam intensity was controlled within errors of ±0.1mA by the RF-power feedback. The amount of Cs was also controlled by remotely opening a Cs-valve to keep the RF-power lower than a settled value.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2015

Alternative RF coupling configurations for H{sup −} ion sources

RF heated sources for negative hydrogen ions both for fusion and accelerators require very high RF powers in order to achieve the required H{sup −} current what poses high demands on the RF generators and the RF circuit. Therefore it is highly desirable to improve the RF efficiency of the sources. This could be achieved by applying different RF coupling concepts than the currently used inductive coupling via a helical antenna, namely Helicon coupling or coupling via a planar ICP antenna enhanced with ferrites. In order to investigate the feasibility of these concepts, two small laboratory experiments have been set up. The PlanICE experiment, where the enhanced inductive coupling is going to be investigated, is currently under assembly. At the CHARLIE experiment systematic measurements concerning Helicon coupling in hydrogen and deuterium are carried out. The investigations show that a prominent feature of Helicon discharges occurs: the so-called low-field peak. This is a local improvement of the coupling efficiency at a magnetic field strength of a few mT which results in an increased electron density and dissociation degree. The full Helicon mode has not been achieved yet due to the limited available RF power and magnetic field strength but it might be sufficient for the application of the coupling concept to ion sources to operate the discharge in the low-field-peak region.

07 ISOTOPE AND RADIATION SOURCES↗

DOE OSTI2016

Double and triple-harmonic RF buckets and their use for bunch squeezing in AGS

For the past several years we have merged bunches in AGS in order to achieve the desired intensity per bunch prior to injection into RHIC. The merging is done on a flat porch at or above AGS injection energy. Because the merges involve the reduction of the RF harmonic number by a factor of 2 (for a 2 to 1 merge) and then a factor of 3 (for a 3 to 1 merge), one requires RF frequencies 6hf s , 3hf s , 2hf s and hf s , where f s is the revolution frequency on the porch and h = 4 is the fundamental harmonic number. The standard AGS RF cavities cannot operate at the lowest frequencies 2hf s and hf s ; these are provided by two modified cavities. Upon completion of the merges, the bunches are sitting in harmonic h buckets. In order to be accelerated they need to be squeezed into harmonic 3h buckets. This is accomplished by producing a double-harmonic bucket in which harmonics h and 2h act in concert, and then a triple-harmonic bucket in which harmonics h, 2h, and 3h act in concert. Simulations have shown that the squeeze presents an acceptance bottleneck which limits the longitudinal emittance that can be put into the harmonic 3h bucket. In this note the areas of the double and triple-harmonic buckets are calculated explicitly, and it is shown that these go through a minimum as the RF voltages are raised to the desired values. Several RF voltage ranges are examined, and the acceptance bottleneck is determined for each of these. Finally, the acceptance bottleneck for Au77+ bunches in AGS is calculated for several RF voltage ranges. The main result is that the RF voltages for the low-frequency harmonic h and 2h cavities both must be at least 22 kV in order to achieve an acceptance of 0:6 eV s per nucleon. If the harmonic h and 2h voltages are 15 and 22 kV, respectively, then the acceptance is reduced to 0:548 eV s per nucleon.

43 PARTICLE ACCELERATORS↗

DOE OSTI2014

Predictions of VRF on a Langmuir Probe under the RF Heating Spiral on the Divertor Floor on NSTX-U

RF heating deposition spirals are observed on the divertor plates on NSTX as shown in for a NB plus RF heating case. It has been shown that the RF spiral is tracked quite well by the spiral mapping of the strike points on the divertor plate of magnetic field lines passing in front of the high harmonic fast wave (HHFW) antenna on NSTX. Indeed, both current instrumented tiles and Langmuir probes respond to the spiral when it is positioned over them. In particular, a positive increment in tile current (collection of electrons) is obtained when the spiral is over the tile. This current can be due to RF rectification and/or RF heating of the scrape off layer (SOL) plasma along the magnetic field lines passing in front of the the HHFW antenna. It is important to determine quantitatively the relative contributions of these processes. Here we explore the properties of the characteristics of probes on the lower divertor plate to determine the likelyhood that the primary cause of the RF heat deposition is RF rectification.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2018

Effect of RF Power on Structural, Magnetic, and Optical Properties of CoFe{sub 2}O{sub 4} Thin Films

The thin films of CoFe{sub 2}O{sub 4} were deposited on glass substrates by radio-frequency (RF) sputtering. The effect of RF power variation from 60–120 W on the structure, magnetic, and optical properties of the as-deposited films and films annealed at 500 °C was studied. The magnetic parameters of the film, i.e., in-plane coercivity (H{sub c}), saturation magnetization (M{sub s}), and remanence (M{sub r}) increase as RF power is increased from 60 to 80 W followed by a decreasing trend with further increase in RF power to 120 W. Annealing of the film significantly improves the magnetic properties. The largest grain size and the best crystallinity of the film are obtained for the film deposited at 80 W of RF power. The thin films exhibited 70–80% optical transmittance. Optical band gap (E{sub g}) depends on the RF power and grain size, and it varies between 2.08 and 2.16 eV for the as-deposited films and between 2.16 and 2.30 eV for the annealed films. The study shows that RF power used for depositing the film has strong effect on the microstructure and properties of the film.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2025

A compact low-level RF control system for advanced concept compact electron linear accelerator

A compact low-level RF (LLRF) control system based on RF system-on-chip (RFSoC) technology has been designed for the Advanced Concept Compact Electron Linear-accelerator (ACCEL) program, which has challenging requirements in both RF performance and size, weight, and power consumption (SWaP). The compact LLRF solution employs the direct RF sampling technique of RFSoC, which samples the RF signals directly without any analog upconversion and downconversion. Compared with the conventional heterodyne based architecture used for the LLRF system of a linear accelerator (LINAC), the elimination of analog mixers can significantly reduce the size and weight of the system, especially with LINAC requiring a larger number of RF channels. Based on the requirements of ACCEL, a prototype LLRF platform has been developed, and the control schemes have been proposed. The prototype LLRF system demonstrated magnitude and phase fluctuation levels below 1% and 1° on the flattop of a 2 μs RF pulse. The LLRF control schemes proposed for ACCEL are implemented with a prototype hardware platform. In conclusion, this paper will introduce the new compact LLRF solution and summarize a selection of experimental test results of the prototype itself and with the accelerating structure cavities designed for ACCEL.

Liu, C. [SLAC National Accelerator Laboratory (SLA↗

DOE OSTI2019

Calculation of RF sheath properties from surface wave-fields: a post-processing method

In ion cyclotron range of frequency (ICRF) experiments in fusion research devices, radio frequency (RF) sheaths form where plasma, strong RF wave fields and material surfaces coexist. These RF sheaths affect plasma material interactions such as sputtering and localized power deposition, as well as the global RF wave fields themselves. RF sheaths may be modeled by employing a sheath boundary condition (BC) in place of the more customary conducting wall BC; however, there are still many ICRF computer codes that do not implement the sheath BC. In this paper we present a method for post-processing results obtained with the conducting wall BC. The post-processing method produces results that are equivalent to those that would have been obtained with the RF sheath BC, under certain assumptions. We found the post-processing method is also useful for verification of sheath BC implementations and as a guide to interpretation and understanding of the role of RF sheaths and their interactions with the waves that drive them.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2022

RF-Net 2: fast inference of virus reassortment and hybridization networks

Abstract Motivation A phylogenetic network is a powerful model to represent entangled evolutionary histories with both divergent (speciation) and convergent (e.g. hybridization, reassortment, recombination) evolution. The standard approach to inference of hybridization networks is to (i) reconstruct rooted gene trees and (ii) leverage gene tree discordance for network inference. Recently, we introduced a method called RF-Net for accurate inference of virus reassortment and hybridization networks from input gene trees in the presence of errors commonly found in phylogenetic trees. While RF-Net demonstrated the ability to accurately infer networks with up to four reticulations from erroneous input gene trees, its application was limited by the number of reticulations it could handle in a reasonable amount of time. This limitation is particularly restrictive in the inference of the evolutionary history of segmented RNA viruses such as influenza A virus (IAV), where reassortment is one of the major mechanisms shaping the evolution of these pathogens. Results Here, we expand the functionality of RF-Net that makes it significantly more applicable in practice. Crucially, we introduce a fast extension to RF-Net, called Fast-RF-Net, that can handle large numbers of reticulations without sacrificing accuracy. In addition, we develop automatic stopping criteria to select the appropriate number of reticulations heuristically and implement a feature for RF-Net to output error-corrected input gene trees. We then conduct a comprehensive study of the original method and its novel extensions and confirm their efficacy in practice using extensive simulation and empirical IAV evolutionary analyses. Availability and implementation RF-Net 2 is available at https://github.com/flu-crew/rf-net-2. Supplementary information Supplementary data are available at Bioinformatics online.

Markin, Alexey (ORCID:0000000332809050)↗

DOE OSTI2022

High-Sensitivity rf Detection Using an Optically Pumped Comagnetometer Based on Natural-Abundance Rubidium with Active Ambient-Field Cancellation

To detect a specific radio-frequency (rf) magnetic field, rf optically pumped magnetometers (OPMs) require a static magnetic field to set the Larmor frequency of the atoms equal to the frequency of interest. However, unshielded and variable magnetic field environments (e.g., an rf OPM on a moving platform) pose a problem for rf OPM operation. Here, we demonstrate the use of a natural-abundance rubidium vapor to make a comagnetometer to address this challenge. Our implementation builds upon the simultaneous application of several OPM techniques within the same vapor cell. First, we use a modified implementation of an OPM variometer based on 87 Rb to detect and actively cancel unwanted external fields at frequencies ≲60 Hz using active feedback to a set of field control coils. In this experiment, we exploit this stabilized field environment to implement a high-sensitivity rf magnetometer using 85 Rb. Using this approach, we demonstrate the ability to measure rf fields with a sensitivity of approximately 9 fT Hz -1/2 inside a magnetic shield in the presence of an applied field of approximately 20 μT along three mutually orthogonal directions. This demonstration opens up a path toward completely unshielded operation of a high-sensitivity rf OPM.

47 OTHER INSTRUMENTATION↗