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DOE OSTI2025

Merging the computational design of chimeric type I polyketide synthases with enzymatic pathways for chemical biosynthesis

Synthetic biology offers the promise of manufacturing chemicals more sustainably than petrochemistry. Yet, both the rate at which biomanufacturing can synthesize these molecules and the net chemical accessible space are limited by existing pathway discovery methods, which can often rely on arduous literature searches. Here, we introduce BioPKS pipeline, an automated retrobiosynthesis tool combining multifunctional type I polyketide synthases (PKSs) and monofunctional enzymes via two complementary tools: RetroTide and DORAnet. Monofunctional enzymes are valuable for carefully decorating a substrate’s carbon backbone while PKSs are unique in their ability to iteratively catalyze carbon-carbon bond formation reactions, thereby expanding carbon backbones in a predictable fashion. We evaluate the performance of BioPKS pipeline using a previously reported set of 155 biomanufacturing candidates, achieving exact synthetic designs for 93 compounds and generating chemically similar pathways for most remaining targets. Furthermore, BioPKS pipeline can propose pathways for the complex therapeutic natural products cryptofolione and basidalin.

Chainani, Yash↗

DOE OSTI2024

Design and construction of the CMS Outer Tracker for the Phase-2 Upgrade

he High Luminosity LHC (HL-LHC) is expected to deliver an integrated luminosity of $3000-4000$~fb$^{-1}$ after 10 years of operation with peak instantaneous luminosity reaching about $5-7.5\times10^{34}$cm$^{-2}$s$^{-1}$. During Long Shutdown 3, several components of the CMS detector will undergo major changes, called Phase-2 upgrade, to be able to operate in the challenging environment of the HL-LHC. The current CMS silicon strip tracker has to be replaced with a new detector. The Phase-2 Outer Tracker (OT) will have higher radiation tolerance, higher granularity, and the capability to handle higher data rates compared to the current system. Another key feature of the OT will be to provide tracking information to the Level-1 (L1) trigger, allowing trigger rates to be kept at a sustainable level without sacrificing physics potential. For this, the OT will be made out of modules with two closely spaced sensors read out by front-end ASICs, which can correlate hits in the two sensors creating short track segments called stubs. The stubs will be used for tracking in the L1 track finder. The modules come in two flavors: strip-strip (2S) and pixel-strip (PS), which contain different sensor configurations and multiple ASICs. In this contribution, the design of the CMS Phase-2 OT, the technological choices, and the quality assurance (QA) procedures used to ensure the functionality of the modules will be reported. The contribution will cover the first results with pre-production devices and the different aspects taken into account during the QA: from fulfilling the precision specification of the module assembly procedure to ensuring the proper communication between the different ASICs on the module. The module noise performance is also checked and the full module functionality is verified at different temperatures.

Zoi, Irene↗

DOE OSTI2020

The CMS Outer Tracker for the High Luminosity LHC

The High Luminosity LHC (HL-LHC) is expected to deliver an integrated luminosity of 3000 - 4000 fb -1 in its lifetime with peak instantaneous luminosities reaching about 5 - 7.5×10 34 cm -2 s -1 . During the Long Shutdown 3 period, several components of the CMS detector will undergo major changes, called Phase-2 upgrades, to be able to operate in the challenging environment of the HL-LHC, including the replacement of the entire silicon tracker. The Phase-2 Outer Tracker (OT) will have high radiation tolerance, higher granularity, and the capability to handle higher data rates. Another key feature of the OT will be to provide tracking information to the Level-1 trigger, allowing trigger rates to be kept at a sustainable level without sacrificing physics potential. For this, the OT will be made of modules that have two closely spaced sensors read out by the same electronics, which can correlate hits in the two sensors creating short track segments called ”stubs”. The stubs will be used for tracking at 40 MHz. In this contribution, the design of the CMS Phase-2 OT, the technological choices, and highlights of research and development activities are reported.

Ravera, Fabio↗

DOE OSTI2025

Circularity Futures Workshop Series: Summary Report

The aim of this report is to synthesize key feedback received from the three-part Circularity Futures workshop series held in Spring 2024. The workshop series was conducted by the National Renewable Energy Laboratory (NREL) on behalf of U.S. Department of Energy, Office Energy Efficiency and Renewable Energy (EERE), and was broken into three workshops: Workshop 1 - Circularity Analysis Needs and Priorities; Workshop 2 - Circularity Metrics and Indicators; and Workshop 3 - Circularity Data. Together, the workshops focused on identifying the existing priorities and gaps in the circularity modeling space, understanding different stakeholders' use and interpretation of circularity metrics and indicators, identifying common data gaps and data quality challenges, and assessing the robustness of available solutions. The workshop series brought a diverse group of stakeholders - including representatives from U.S. government offices, national labs, nonprofit organizations, industry, and academia - to collect first-hand feedback on needs, priorities, challenges and opportunities in the circularity modeling and analysis space. The workshop discussions highlighted numerous common needs, priorities and challenges among the interviewed groups. Several topics were frequently discussed, including: 1) Circularity as a pathway for sustainable economic growth: While circularity is generally defined in terms of resource conservation and reducing wasteful disposal of materials, participants agreed that circular strategies should serve broader economic, environmental, and social goals. It is therefore crucial for circularity analysis to look beyond waste reduction and instead evaluate a variety of impact metrics such as cost savings, job creation, air quality, and pollutant emissions. Mutli-criteria decision-making frameworks may be useful for making sense of disparate metrics and evaluating tradeoffs between impact categories.; 2) Economic and social factors are not well understood: Underdevelopment of existing end-of-life (EOL) management infrastructure, inconsistent standardization codes and policy space in reusing recycled content, and suboptimal collection and sorting strategies collectively contribute to uncertainty about the economic potential of circular pathways. The latter observation is consistent among all technologies but more emphasized for renewable energy systems. Social impacts of circularity practices are less understood and less researched than other sustainability aspects.; 3) Inconsistent methods for assessing emerging technologies: LCA and TEA results vary widely depending on the assumptions made with regards to market adoption of new technologies. Emerging technologies suffer limited availability of data needed to conduct a robust circularity analysis. Yet, understanding projected impacts of proposed nascent technology is a key need for different stakeholder groups.; and 4) Lack of temporally and geospatially explicit data: There is a need for open data that represents variations in circularity technologies over time and location. The lack thereof leads to aggregated and potentially misrepresented results in circularity analysis. Sensitivity analyses should be included to verify whether options perceived as more sustainable align with real-world practices.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2025

Scientific frontiers of agrivoltaic cropping systems

Agrivoltaic (AV) systems integrate agriculture with electricity conversion through photovoltaic (PV) modules. Compared with conventional ground-mounted PV systems, AV systems can reduce land-use competition and offer agronomic and economic advantages, such as more stable crop production and additional farm income. However, AV systems can decrease agricultural performance and are typically 20-90% costlier to install than conventional PV systems. Here, in this Review, we analyse the implementation of AV cropping systems to preserve agricultural activities and highlight challenges and barriers. The global electricity potential of AV systems is ~66-385 PWh annually, depending on PV technology and installation density, if deployed in the most suitable areas, without accounting for grid availability. Scaling up has been hindered by crop selection for shading conditions, decreased energy conversion per unit of land area and issues with social acceptance, landscape impact and environmental sustainability. These issues can be addressed by developments such as wavelength-selective PV; system configurations, such as optimizing module spacing to reduce shading; and operational methods, such as optimizing tracking strategies and integrating agricultural infrastructure. Cross-sector policies can support AV systems by addressing the needs of diverse stakeholders over shared land resources. Further development will require collaboration among the design, performance, deployment and systems research communities.

14 SOLAR ENERGY↗

DOE OSTI2024

Design and construction of the CMS Outer Tracker for the Phase-2 Upgrade

The High Luminosity LHC (HL-LHC) is expected to deliver an integrated luminosity of $3000-4000\;$fb$^{-1}$ after 10 years of operation with peak instantaneous luminosity reaching about $5-7.5\times10^{34}$cm$^{-2}$s$^{-1}$. During Long Shutdown 3, several components of the CMS detector will undergo major changes, called Phase-2 upgrades, to be able to operate in the challenging environment of the HL-LHC. The current CMS silicon strip tracker has to be replaced with a new detector. The Phase-2 Outer Tracker (OT) will have high radiation tolerance, higher granularity and the capability to handle higher data rates. Another key feature of the OT will be to provide tracking information to the Level-1 trigger, allowing trigger rates to be kept at a sustainable level without sacrificing physics potential. For this, the OT will be made out of modules which have two closely spaced sensors read out by front-end ASICs, which can correlate hits in the two sensors creating short track segments, called stubs. The stubs will be used for tracking in the L1 track finder. In this contribution, the design of the CMS Phase-2 OT, the technological choices and first results with prototype devices are reported.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2025

Development and flight-testing of modular autonomous cultivation systems for biological plastics upcycling aboard the ISS

Cultivation of microorganisms in space has enormous potential to enable in-situ resource utilization (ISRU) Here, we develop an autonomous payload with fully programmable serial passaging and sample preservation, termed the Modular Open Biological Platform (MOBP), and flight-test the MOBP aboard the International Space Station (ISS) by conducting enzymatic and microbial plastics upcycling experiments. The MOBP is a compact, modular bioreactor system that allows for sustained microbial growth via automated media transfers, such as those for sample collection and storage for terrestrial analyses, and precise data monitoring from integrated sensors. The MOBP was flight-tested with two experiments designed to evaluate biological upcycling of the plastic poly(ethylene terephthalate) (PET). The bioproduct βKA can be polymerized into a nylon-6,6 analog with improved properties for use in the production of a variety of materials. We posit the MOBP will aid in democratizing the execution of synthetic biology in spaceflight towards enabling ISRU.

09 BIOMASS FUELS↗

DOE OSTI2023

Production of graphene-derivatives using organic molecules for supercapacitors and beyond

Graphene is rapidly expanding for applications ranging from nanoelectronics to space exploration. A material with such enormous potential requires a variety of synthesis methods. Here, we report a library of relatively sustainable redox-active organic molecules for the reduction of graphene oxide (GO) namely N,N,N',N'-tetramethyl-p-phenylenediamine (TMPD), 7,7,8,8-tetracyanoquinodimethane (TCNQ), ferrocene (Ferro), and decamethylferrocene (DFerro). Among them, the reduction of GO using TMPD starts even with simple hand-shaking for just a few minutes. By controlling the sonication time under ambient conditions, one can control the electronic properties of the reduced graphene oxide (rGO). The resulting free-standing films delivered a capacitance of 185 F/g when tested them as supercapacitor electrodes. We also demonstrated that TMPD can exfoliate graphite into few-layer graphene sheets with simple sonication. Here, we further show that under mild heating, these molecules can serve as dopants during the reduction process to produce nitrogen-doped graphene. Our results may guide researchers to explore sustainable organic molecules for the large-scale production of graphene-based materials for diverse applications.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Acceleration of heavy ions in inverse free electron laser

In conventional linear accelerators, the beam is accelerated with a synchronous harmonic of the radio frequency field where the electric field component is collinear with the beam direction. This approach requires the design of complex accelerating structures, especially for low-energy heavy ions. If the beam motion were sustainably coupled to transverse electromagnetic fields, this could significantly simplify the accelerating structure design, and even allow acceleration with free-space waves. However, despite the long history of the proposed concept for accelerating low-velocity ion beams, it has not found practical application, partially because of the complexity of the technical design. In this paper, we present a practical design approach for this undulator-based accelerator for low-energy heavy-ions, reminiscent of the inverse free electron laser operating principle, but in a different parameter space.

47 OTHER INSTRUMENTATION↗

DOE OSTI2021

Radiosonde Observations of Environments Supporting Deep Moist Convection Initiation during RELAMPAGO-CACTI

The Remote Sensing of Electrification, Lightning, and Mesoscale/Microscale Processes with Adaptive Ground Observations (RELAMPAGO) and Cloud, Aerosol, and Complex Terrain Interactions (CACTI) projects deployed a high-spatiotemporal-resolution radiosonde network to examine environments supporting deep convection in the complex terrain of central Argentina. This study aims to characterize atmospheric profiles most representative of the near-cloud environment (in time and space) to identify the mesoscale ingredients affecting storm initiation and growth. Spatiotemporal autocorrelation analysis of the soundings reveals that there is considerable environmental heterogeneity, with boundary layer thermodynamic and kinematic fields becoming statistically uncorrelated on scales of 1–2 h and 30 km. Using this as guidance, we examine a variety of environmental parameters derived from soundings collected within close proximity (30 km in space and 30 min in time) of 44 events over 9 days where the atmosphere either: 1) supported the initiation of sustained precipitating convection, 2) yielded weak and short-lived precipitating convection, or 3) produced no precipitating convection in disagreement with numerical forecasts from convection-allowing models (i.e., Null events). There are large statistical differences between the Null event environments and those supporting any convective precipitation. Null event profiles contained larger convective available potential energy, but had low free-tropospheric relative humidity, higher freezing levels, and evidence of limited horizontal convergence near the terrain at low levels that likely suppressed deep convective growth. Here, we also present evidence from the radiosonde and satellite measurements that flow–terrain interactions may yield gravity wave activity that affects CI outcome.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Office of Nuclear Verification FY 2023 Quarterly Report TSVT Q1

This project encompasses the continued development and training of a U.S. operational team, the Test Site Verification Team (TSVT), supporting verification of nuclear testing activities. TSVT builds on decades of U.S. nuclear testing history and nuclear explosion monitoring experience. The Team maintains readiness to deploy internationally on short notice to provide field-based support of verification of declared or undeclared nuclear testing and associated activities, as well as follow-on activities including monitoring and capability disablement and dismantlement, as established by negotiated agreement or treaty. The roles and structure of the TSVT are integrated with other NA-243 deployable verification teams and the interagency. FY23 TSVT activities focus on continued capability buildup within the team, including Team trainings and exercises with a focus on missions in confined spaces (e.g., tunnels, mines, other underground facilities), increased familiarity with foreign nuclear weapons testing programs, demonstration of Team capacity to deploy, train, and practice sustained OPSEC in non-western locations, establishment of sustainable storage and maintenance of equipment, specification and procurement of additional equipment to support field observations, further evolution of concepts of operation documents (CONOPs), and mission coordination with Headquarters and associated Stakeholders. Activities will culminate with a full-scale domestic team exercise at the end of FY23 focusing on underground activities signatures/observations and safety including advanced outdoor safety and familiarity in working around explosive test environments. In addition, we will be further articulating approaches and capacity relevant to the identification of nuclear tests, as well as monitoring of nuclear testing activities and/or dismantlement of nuclear test sites and anticipate developing additional equipment requests in support of this evolution. The TSVT Team Leads will also coordinate with its Senior Advisor, the TSVT Logistics and Readiness (L&R) Training Lead, and NNSA Headquarters to draft a five-year TSVT training and exercise plan, that strategically and incrementally builds capacity and expertise in key areas of significance for the continuum of nuclear and nuclear-related testing activities that fall within the team’s mission space.

42 ENGINEERING↗

DOE OSTI2022

ERLs and Sustainability

In any new accelerator proposal, sustainability issues will be heavily scrutinized, be that in electricity and water use, the overall efficiency of the facility, including reusing the heat for other purposes (space heating, biogas production, etc.) or energy recycling. These aspects are important for all new facilities, but ERLs bring a new dimension. Directly returning the energy of an unused beam into RF that can be used for acceleration with practically no losses is a unique feature of ERLs. While not all of the energy can be recovered, the overall efficiency of the process is extremely high. This advantage starts with a reduction in the RF power needed for acceleration, which translates into smaller RF sources and their associated power transformers (reducing the resources needed for their production), and less electric power and water cooling required (reduced operating costs as well as a reduced carbon footprint). Given the inherent advantages of ERLs, it is to be expected that their sustainability profile will eclipse other colliders with similar physics potential.

Hutton, Andrew↗

DOE OSTI2024

The Median Isn’t the Message: soil nutrient hot spots have a disproportionate influence on biogeochemical structure across years, seasons, and depths

Abstract Soil nutrient distribution is heterogeneous in space and time, potentially altering nutrient acquisition by trees and microorganisms. Ecologists have distinguished “hot spots” (HSs) as areas with enhanced and sustained rates of nutrient fluxes relative to the surrounding soil matrix. We evaluated the spatial and temporal patterns in nutrient flux HSs in two mixed-conifer forest soils by repeatedly sampling the soil solution at the same spatial locations (horizontally and vertically) over multiple seasons and years using ion exchange resins incubated in situ. The climate of these forests is Mediterranean, with intense fall rains occurring following summers with little precipitation, and highly variable winter snowfall. Hot spots formed most often for NO 3 − and Na + . Although nutrient HSs often occurred in the same spatial location multiple times, HSs persisted more often for PO 4 3− NH 4 + , and NO 3 − , and were more transient for Ca 2+ , Mg 2+ , and Na + . Sampling year (annual precipitation ranged from 558 to 1223 mm) impacted the occurrence of HSs for most nutrients, but season was only significant for PO 4 3− , NH 4 + , NO 3 − , and Na + , with HSs forming more often after fall rains than after spring snowmelt. The frequency of HSs significantly decreased with soil depth for all nutrients, forming most commonly immediately below the surficial organic horizon. Although HSs accounted for less than 17% of the sampling volume, they were responsible for 56–88% of PO 4 3− , NH 4 + , and NO 3 − resin fluxes. Our results suggest that macronutrient HSs have a disproportional contribution to soil biogeochemical structure, with implications for vegetation nutrient acquisition strategies and biogeochemical models. Graphical abstract

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

EMPOWER: Accelerating the Transformation of the Global Energy Economy - 2022 JISEA Annual Report

The 2022 JISEA Annual Report describes accomplishments from the past year at the Joint Institute for Strategic Energy Analysis, which is accelerating the transformation of the global energy economy. 2021 was filled collaboration and high-impact multidisciplinary projects, exploring everything from the energy-water-food nexus, to the cobalt supply chain, to sustainable communities. This year also welcomed the JISEA Catalyzers Initiative that is accelerating research capabilities at the National Renewable Energy Laboratory. The Catalyzers are empowering communities and research partners to by bringing together experts working within one space to discuss capabilities and future needs to continue to stay ahead of the research curve.

clean energy↗

DOE OSTI2023

Cobalt‐Catalyzed Electroreductive Alkylation of Unactivated Alkyl Chlorides with Conjugated Olefins

Abstract Reactions of unactivated alkyl chlorides under mild and sustainable conditions are rare compared to those of alkyl bromides or iodides. As a result, synthetic methods capable of modifying the vast chemical space of chloroalkane reagents, wastes, and materials are limited. We report the cobalt‐catalyzed reductive addition of unactivated alkyl chlorides to conjugated alkenes. Co‐catalyzed activation of alkyl chlorides is performed under electroreductive conditions, and the resulting reactions constitute formal alkyl‐alkyl bond formation. In addition to developing an operationally simple methodology, detailed mechanistic studies provide insights into the elementary steps of a proposed catalytic cycle. In particular, we propose a switch in the mechanism of C−Cl bond activation from nucleophilic substitution to halogen atom abstraction, which is critical for efficiently generating alkyl radicals. These mechanistic insights were leveraged in designing ligands that enable couplings of primary, secondary, and tertiary alkyl chlorides.

Al Zubaydi, Samir↗

DOE OSTI2023

Cobalt‐Catalyzed Electroreductive Alkylation of Unactivated Alkyl Chlorides with Conjugated Olefins

Al Zubaydi, Samir↗

DOE OSTI2025

On the Dependence of Simulated Convection on Domain Size in CRMs

Abstract We present a heuristic model to explain the suppression of deep convection in convection‐resolving models (CRMs) with a small number of grid columns, such as those used in super‐parameterized or multi‐scale modeling framework (MMF) general circulation models (GCM) of the atmosphere. Domains with few grid columns require greater instability to sustain convection because they force a large convective fraction, driving strong compensating subsidence warming. Updraft dilution, which is stronger for reduced horizontal grid spacing, enhances this effect. Thus, suppression of deep convection in CRMs with few grid columns can be reduced by increasing grid spacing. Radiative‐convective equilibrium simulations using standalone CRM simulations with the System for Atmospheric Modeling (SAM) and using GCM‐coupled CRM simulations with the Energy Exascale Earth System Model (E3SM)‐MMF confirm the heuristic model results.

CRM↗

DOE OSTI2021

Chaotic Dynamics Driven by Particle-Core Interactions

High-intensity beams in modern linacs are frequently encircled by diffuse halos, which drive sustained particle losses and result in gradual degradation of accelerating structures. In large part, the growth of halos is facilitated by internal space-charge forces within the beams, and detailed characterization of this process constitutes an active area of ongoing research. A partial understanding of dynamics that ensue within space-charge dominated beams is presented by the particle-core interaction paradigm – a mathematical model wherein single particle dynamics, subject to the collective potential of the core, are treated as a proxy for the broader behavior of the beam. In this work, we investigate the conditions for the onset of large-scale chaos within the framework of this model, and demonstrate that the propensity towards stochastic evolution is strongly dependent upon the charge distribution of the beam. In particular, we show that while particle motion within a uniformly charged beam is dominantly regular, rapid deterministic chaos readily arises within space-charge dominated Gaussian beams. Importantly, we find that for sufficiently high values of the beam’s space charge and beam pulsation amplitude, enhanced chaotic mixing between the core and the halo can lead to an enhanced radial diffusion of charged particles. We explain our results from analytic grounds by demonstrating that chaotic motion is driven by the intersection of two principal resonances of the system, and derive the relevant overlap conditions. Additionally, our analysis illuminates a close connection between the mathematical formulation of the particle-core interaction model and the Andoyer family of integrable Hamiltonians

43 PARTICLE ACCELERATORS↗