Search NASA⌕ Search

SEARCH · Search NASA

Results for “cell mapping”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 91 records · Page 5

Geometrical and topological issues in octree based automatic meshing

Finite element meshes derived automatically from solid models through recursive spatial subdivision schemes (octrees) can be made to inherit the hierarchical structure and the spatial addressability intrinsic to the underlying grid. These two properties, together with the geometric regularity that can also be built into the mesh, make octree based meshes ideally suited for efficient analysis and self-adaptive remeshing and reanalysis. The element decomposition of the octal cells that intersect the boundary of the domain is discussed. The problem, central to octree based meshing, is solved by combining template mapping and element extraction into a procedure that utilizes both constructive solid geometry and boundary representation techniques. Boundary cells that are not intersected by the edge of the domain boundary are easily mapped to predefined element topology. Cells containing edges (and vertices) are first transformed into a planar polyhedron and then triangulated via element extractor. The modeling environments required for the derivation of planar polyhedra and for element extraction are analyzed.

Saxena, Mukul↗

Improved image decompression for reduced transform coding artifacts

The perceived quality of images reconstructed from low bit rate compression is severely degraded by the appearance of transform coding artifacts. This paper proposes a method for producing higher quality reconstructed images based on a stochastic model for the image data. Quantization (scalar or vector) partitions the transform coefficient space and maps all points in a partition cell to a representative reconstruction point, usually taken as the centroid of the cell. The proposed image estimation technique selects the reconstruction point within the quantization partition cell which results in a reconstructed image which best fits a non-Gaussian Markov random field (MRF) image model. This approach results in a convex constrained optimization problem which can be solved iteratively. At each iteration, the gradient projection method is used to update the estimate based on the image model. In the transform domain, the resulting coefficient reconstruction points are projected to the particular quantization partition cells defined by the compressed image. Experimental results will be shown for images compressed using scalar quantization of block DCT and using vector quantization of subband wavelet transform. The proposed image decompression provides a reconstructed image with reduced visibility of transform coding artifacts and superior perceived quality.

Orourke, Thomas P.↗

Use of GPR Surveys in Historical Archaeology Studies at Gainesville Mississippi

Ground Penetrating Radar (GPR) was used in recent surveys to acquire subsurface geophysical data for historic sites at Gainesville, Mississippi, a town abandoned in 1962 with the building of the John C. Stennis Space Center. Prior to GPR data collection, a 20- by 20-meter grid was established using UTM map projection and GPS for locating cell corners. Lines of GPR data were then collected every 25 centimeters. The images were then processed, and coregistered to georeferenced aerial and satellite imagery. This procedure is enabling analysts to assess the GPR imagery more effectively in a geospatial context. Field validation of anomalies created by known subsurface features from both recent and historic sources is allowing soil attributes, such as variations in Relative Dielectric Permittivity, to be tested more accurately. Additional work is assessing how GPR data can be effectively combined with other forms of remote sensing to direct archaeological surveys and excavations.

Goodwin, Ben↗

The Arabidopsis SKU5 gene encodes an extracellular glycosyl phosphatidylinositol-anchored glycoprotein involved in directional root growth

To investigate how roots respond to directional cues, we characterized a T-DNA-tagged Arabidopsis mutant named sku5 in which the roots skewed and looped away from the normal downward direction of growth on inclined agar surfaces. sku5 roots and etiolated hypocotyls were slightly shorter than normal and exhibited a counterclockwise (left-handed) axial rotation bias. The surface-dependent skewing phenotype disappeared when the roots penetrated the agar surface, but the axial rotation defect persisted, revealing that these two directional growth processes are separable. The SKU5 gene belongs to a 19-member gene family designated SKS (SKU5 Similar) that is related structurally to the multiple-copper oxidases ascorbate oxidase and laccase. However, the SKS proteins lack several of the conserved copper binding motifs characteristic of copper oxidases, and no enzymatic function could be assigned to the SKU5 protein. Analysis of plants expressing SKU5 reporter constructs and protein gel blot analysis showed that SKU5 was expressed most strongly in expanding tissues. SKU5 was glycosylated and modified by glycosyl phosphatidylinositol and localized to both the plasma membrane and the cell wall. Our observations suggest that SKU5 affects two directional growth processes, possibly by participating in cell wall expansion.

NASA Discipline Plant Biology↗

Multispectral Imaging Broadens Cellular Analysis

Amnis Corporation, a Seattle-based biotechnology company, developed ImageStream to produce sensitive fluorescence images of cells in flow. The company responded to an SBIR solicitation from Ames Research Center, and proposed to evaluate several methods of extending the depth of field for its ImageStream system and implement the best as an upgrade to its commercial products. This would allow users to view whole cells at the same time, rather than just one section of each cell. Through Phase I and II SBIR contracts, Ames provided Amnis the funding the company needed to develop this extended functionality. For NASA, the resulting high-speed image flow cytometry process made its way into Medusa, a life-detection instrument built to collect, store, and analyze sample organisms from erupting hydrothermal vents, and has the potential to benefit space flight health monitoring. On the commercial end, Amnis has implemented the process in ImageStream, combining high-resolution microscopy and flow cytometry in a single instrument, giving researchers the power to conduct quantitative analyses of individual cells and cell populations at the same time, in the same experiment. ImageStream is also built for many other applications, including cell signaling and pathway analysis; classification and characterization of peripheral blood mononuclear cell populations; quantitative morphology; apoptosis (cell death) assays; gene expression analysis; analysis of cell conjugates; molecular distribution; and receptor mapping and distribution.

Source record↗

Symmetric Phase-Only Filtering in Particle-Image Velocimetry

Symmetrical phase-only filtering (SPOF) can be exploited to obtain substantial improvements in the results of data processing in particle-image velocimetry (PIV). In comparison with traditional PIV data processing, SPOF PIV data processing yields narrower and larger amplitude correlation peaks, thereby providing more-accurate velocity estimates. The higher signal-to-noise ratios associated with the higher amplitude correlation peaks afford greater robustness and reliability of processing. SPOF also affords superior performance in the presence of surface flare light and/or background light. SPOF algorithms can readily be incorporated into pre-existing algorithms used to process digitized image data in PIV, without significantly increasing processing times. A summary of PIV and traditional PIV data processing is prerequisite to a meaningful description of SPOF PIV processing. In PIV, a pulsed laser is used to illuminate a substantially planar region of a flowing fluid in which particles are entrained. An electronic camera records digital images of the particles at two instants of time. The components of velocity of the fluid in the illuminated plane can be obtained by determining the displacements of particles between the two illumination pulses. The objective in PIV data processing is to compute the particle displacements from the digital image data. In traditional PIV data processing, to which the present innovation applies, the two images are divided into a grid of subregions and the displacements determined from cross-correlations between the corresponding sub-regions in the first and second images. The cross-correlation process begins with the calculation of the Fourier transforms (or fast Fourier transforms) of the subregion portions of the images. The Fourier transforms from the corresponding subregions are multiplied, and this product is inverse Fourier transformed, yielding the cross-correlation intensity distribution. The average displacement of the particles across a subregion results in a displacement of the correlation peak from the center of the correlation plane. The velocity is then computed from the displacement of the correlation peak and the time between the recording of the two images. The process as described thus far is performed for all the subregions. The resulting set of velocities in grid cells amounts to a velocity vector map of the flow field recorded on the image plane. In traditional PIV processing, surface flare light and bright background light give rise to a large, broad correlation peak, at the center of the correlation plane, that can overwhelm the true particle- displacement correlation peak. This has made it necessary to resort to tedious image-masking and background-subtraction procedures to recover the relatively small amplitude particle-displacement correlation peak. SPOF is a variant of phase-only filtering (POF), which, in turn, is a variant of matched spatial filtering (MSF). In MSF, one projects a first image (denoted the input image) onto a second image (denoted the filter) as part of a computation to determine how much and what part of the filter is present in the input image. MSF is equivalent to cross-correlation. In POF, the frequency-domain content of the MSF filter is modified to produce a unitamplitude (phase-only) object. POF is implemented by normalizing the Fourier transform of the filter by its magnitude. The advantage of POFs is that they yield correlation peaks that are sharper and have higher signal-to-noise ratios than those obtained through traditional MSF. In the SPOF, these benefits of POF can be extended to PIV data processing. The SPOF yields even better performance than the POF approach, which is uniquely applicable to PIV type image data. In SPOF as now applied to PIV data processing, a subregion of the first image is treated as the input image and the corresponding subregion of the second image is treated as the filter. The Fourier transforms from both the firs and second- image subregions are normalized by the square roots of their respective magnitudes. This scheme yields optimal performance because the amounts of normalization applied to the spatial-frequency contents of the input and filter scenes are just enough to enhance their high-spatial-frequency contents while reducing their spurious low-spatial-frequency content. As a result, in SPOF PIV processing, particle-displacement correlation peaks can readily be detected above spurious background peaks, without need for masking or background subtraction.

Wemet, Mark P.↗

NASA Tech Briefs, June 2006

Topics covered include: Magnetic-Field-Response Measurement-Acquisition System; Platform for Testing Robotic Vehicles on Simulated Terrain; Interferometer for Low-Uncertainty Vector Metrology; Rayleigh Scattering for Measuring Flow in a Nozzle Testing Facility; "Virtual Feel" Capaciflectors; FETs Based on Doped Polyaniline/Polyethylene Oxide Fibers; Miniature Housings for Electronics With Standard Interfaces; Integrated Modeling Environment; Modified Recursive Hierarchical Segmentation of Data; Sizing Structures and Predicting Weight of a Spacecraft; Stress Testing of Data-Communication Networks; Framework for Flexible Security in Group Communications; Software for Collaborative Use of Large Interactive Displays; Microsphere Insulation Panels; Single-Wall Carbon Nanotube Anodes for Lithium Cells; Tantalum-Based Ceramics for Refractory Composites; Integral Flexure Mounts for Metal Mirrors for Cryogenic Use; Templates for Fabricating Nanowire/Nanoconduit- Based Devices; Measuring Vapors To Monitor the State of Cure of a Resin; Partial-Vacuum-Gasketed Electrochemical Corrosion Cell; Theodolite Ring Lights; Integrating Terrain Maps Into a Reactive Navigation Strategy; Reducing Centroid Error Through Model-Based Noise Reduction; Adaptive Modeling Language and Its Derivatives; Stable Satellite Orbits for Global Coverage of the Moon; and Low-Cost Propellant Launch From a Tethered Balloon

Source record↗

A Comparison of Risk Sensitive Path Planning Methods for Aircraft Emergency Landing

Determining the best site to land a damaged aircraft presents some interesting challenges for standard path planning techniques. There are multiple possible locations to consider, the space is 3-dimensional with dynamics, the criteria for a good path is determined by overall risk rather than distance or time, and optimization really matters, since an improved path corresponds to greater expected survival rate. We have investigated a number of different path planning methods for solving this problem, including cell decomposition, visibility graphs, probabilistic road maps (PRMs), and local search techniques. In their pure form, none of these techniques have proven to be entirely satisfactory - some are too slow or unpredictable, some produce highly non-optimal paths or do not find certain types of paths, and some do not cope well with the dynamic constraints when controllability is limited. In the end, we are converging towards a hybrid technique that involves seeding a roadmap with a layered visibility graph, using PRM to extend that roadmap, and using local search to further optimize the resulting paths. We describe the techniques we have investigated, report on our experiments with these techniques, and discuss when and why various techniques were unsatisfactory.

Meuleau, Nicolas↗

Recent Improvements in the Dart Model for Atmosphere, Topography, Large Landscape, Chlorophyll Fluorescence, Satellite Image Inversion

Physical models simulating the radiative budget (RB) and remote sensing (RS) observation of three-dimensional (3D) landscapes are critical to better understand human and natural components of the Earth system and further develop RS technology. DART is one of the most comprehensive 3D models of Earth-atmosphere optical radiative transfer (RT), from ultraviolet (UV) to thermal infrared (TIR). It simulates the optical signal of proximal, aerial and satellite imaging spectrometers and laser scanners, the 3D RB and solar induced chlorophyll fluorescence (SIF) signal, for any urban or natural landscape and any experimental or instrument configuration. It is freely available for research and teaching activities (https://dart.omp.eu). Here, five recent advances are presented. 1) Atmosphere RT. 2) RT in non repetitive topography. 3) Monte Carlo modelling for fast RS image simulation of large landscapes. 4) SIF modelling for vegetation simulated as facets and turbid cells. 5) RS image inversion for mapping the optical properties of urban material and the urban radiative budget.

DART↗

Coupling of Sph and Finite Element Codes for Multi-Layer Orbital Debris Shield Design

Particle-based hydrodynamics models offer distinct advantages over Eulerian and Lagrangian hydrocodes in particular shock physics applications. Particle models are designed to avoid the mesh distortion and state variable diffusion problems which can hinder the effective use of Lagrangian and Eulerian codes respectively. However conventional particle-in-cell and smooth particle hydrodynamics methods employ particles which are actually moving interpolation points. A new particle-based modeling methodology, termed Hamiltonian particle hydrodynamics, was developed by Fahrenthold and Koo (1997) to provide an alternative, fully Lagrangian, energy-based approach to shock physics simulations. This alternative formulation avoids the tensile and boundary instabilities associated with standard smooth particle hydrodynamics formulations and the diffusive grid- to-particle mapping schemes characteristic of particle-in-cell methods. In the work described herein, the method of Fahrenthold and Koo has been extended, by coupling the aforementioned hydrodynamic particle model to a hexahedral finite element based description of the continuum dynamics. The resulting continuum model retains all of the features (including general contact-impact effects) of Hamiltonian particle hydrodynamics, while in addition accounting for tensile strength, plasticity, and damage effects important in the simulation of hypervelocity impact on orbital debris shielding. A three dimensional, vectorized, and autotasked implementation of the extended particle method described here has been coded for application to orbital debris shielding design. Source code for the pre-processor (PREP), analysis code (EXOS), post-processor (POST), and rezoner (ZONE), have been delivered separately, along with a User's Guide describing installation and application of the software.

Fahrenthold, Eric P.↗

Full two-dimensional transient solutions of electrothermal aircraft blade deicing

Two finite difference methods are presented for the analysis of transient, two-dimensional responses of an electrothermal de-icer pad of an aircraft wing or blade with attached variable ice layer thickness. Both models employ a Crank-Nicholson iterative scheme, and use an enthalpy formulation to handle the phase change in the ice layer. The first technique makes use of a 'staircase' approach, fitting the irregular ice boundary with square computational cells. The second technique uses a body fitted coordinate transform, and maps the exact shape of the irregular boundary into a rectangular body, with uniformally square computational cells. The numerical solution takes place in the transformed plane. Initial results accounting for variable ice layer thickness are presented. Details of planned de-icing tests at NASA-Lewis, which will provide empirical verification for the above two methods, are also presented.

Masiulaniec, K. C.↗

Design criteria for a multiple input land use system

A design is presented that proposes the use of digital image processing techniques to interface existing geocoded data sets and information management systems with thematic maps and remote sensed imagery. The basic premise is that geocoded data sets can be referenced to a raster scan that is equivalent to a grid cell data set, and that images taken of thematic maps or from remote sensing platforms can be converted to a raster scan. A major advantage of the raster format is that x, y coordinates are implicitly recognized by their position in the scan, and z values can be treated as Boolean layers in a three-dimensional data space. Such a system permits the rapid incorporation of data sets, rapid comparison of data sets, and adaptation to variable scales by resampling the raster scans.

Billingsley, F. C.↗

Time variability and structure of quiet sun sources at 6 cm wavelength

Results are presented of a detailed study of quiet sun emitting regions at 6 cm and their correspondence with regions observed at optical wavelengths. The Westerbork Synthesis Radio Telescope was used to obtain a 12-hr synthesis map of a quiet sun region with a resolution of 6 arcsec. Comparison of this map with a Ca(+) K filtergram indicates the features on the 6-cm map to correspond to Ca(+) K chromospheric networks and cells. In addition, about 72% of the magnetic field enhancements observed on photospheric magnetograms coincides with 6-cm emissive regions. Intercomparison of the 12-hr synthesis map, a 4-hr synthesis map and 6-cm fan beam scans along with the Ca(+) K and magnetogram results reveals all of the time-varying 6-cm elements to be located on Ca(+) K networks, and about 40% of them to be coincident with magnetogram enhancements. Lifetimes of the time-varying sources vary from a few minutes to several tens of minutes, and intensity varies by factors of 2 to 7.

Erskine, F. T.↗

Natural Resources Inventory and Land Evaluation in Switzerland

The author has identified the following significant results. A system was developed to operationally map and measure the areal extent of various land use categories for updating existing and producing new and actual thematic maps showing the latest state of rural and urban landscapes and its changes. The processing system includes: (1) preprocessing steps for radiometric and geometric corrections; (2) classification of the data by a multivariate procedure, using a stepwise linear discriminant analysis based on carefully selected training cells; and (3) output in form of color maps by printing black and white theme overlays of a selected scale with photomation system and its coloring and combination into a color composite.

Haefner, H.↗

Spindle neurons of the human anterior cingulate cortex

The human anterior cingulate cortex is distinguished by the presence of an unusual cell type, a large spindle neuron in layer Vb. This cell has been noted numerous times in the historical literature but has not been studied with modern neuroanatomic techniques. For instance, details regarding the neuronal class to which these cells belong and regarding their precise distribution along both ventrodorsal and anteroposterior axes of the cingulate gyrus are still lacking. In the present study, morphological features and the anatomic distribution of this cell type were studied using computer-assisted mapping and immunocytochemical techniques. Spindle neurons are restricted to the subfields of the anterior cingulate cortex (Brodmann's area 24), exhibiting a greater density in anterior portions of this area than in posterior portions, and tapering off in the transition zone between anterior and posterior cingulate cortex. Furthermore, a majority of the spindle cells at any level is located in subarea 24b on the gyral surface. Immunocytochemical analysis revealed that the neurofilament protein triple was present in a large percentage of these neurons and that they did not contain calcium-binding proteins. Injections of the carbocyanine dye DiI into the cingulum bundle revealed that these cells are projection neurons. Finally, spindle cells were consistently affected in Alzheimer's disease cases, with an overall loss of about 60%. Taken together, these observations indicate that the spindle cells of the human cingulate cortex represent a morphological subpopulation of pyramidal neurons whose restricted distribution may be associated with functionally distinct areas.

Non-NASA Center↗

Boundary-conforming mapping applied to computations of highly deformed solidification interfaces

A new boundary-conforming mapping is developed for the calculation of highly deformed cellular solidification interfaces in a model of directional solidification of a binary alloy. The mapping is derived through a variational formulation that is designed so that the grid penetrates the grooves between cells along the interface without causing a loss of ellipticity of the mapping equations. A finite element/Newton method is presented for simultaneous solution of the free boundary problem described by the solutal model of directional solidification and the mapping equations. Results are compared to previous calculations and demonstrate the importance of accurate representation of the interface shape for understanding the solution structure.

Tsiveriotis, K.↗

Comparison of Node-Centered and Cell-Centered Unstructured Finite-Volume Discretizations: Viscous Fluxes - Part 1

Discretization of the viscous terms in current finite-volume unstructured-grid schemes are compared using node-centered and cell-centered approaches in two dimensions. Accuracy and efficiency are studied for six nominally second-order accurate schemes: a node-centered scheme, cell-centered node-averaging schemes with and without clipping, and cell-centered schemes with unweighted, weighted, and approximately mapped least-square face gradient reconstruction. The grids considered range from structured (regular) grids to irregular grids composed of arbitrary mixtures of triangles and quadrilaterals, including random perturbations of the grid points to bring out the worst possible behavior of the solution. Two classes of tests are considered. The first class of tests involves smooth manufactured solutions on both isotropic and highly anisotropic grids with discontinuous metrics, typical of those encountered in grid adaptation. The second class concerns solutions and grids varying strongly anisotropically over a curved body, typical of those encountered in high-Reynolds number turbulent flow simulations. Results from the first class indicate the face least-square methods, the node-averaging method without clipping, and the node-centered method demonstrate second-order convergence of discretization errors with very similar accuracies per degree of freedom. The second class of tests are more discriminating. The node-centered scheme is always second order with an accuracy and complexity in linearization comparable to the best of the cell-centered schemes. In comparison, the cell-centered node-averaging schemes are less accurate, have a higher complexity in linearization, and can fail to converge to the exact solution when clipping of the node-averaged values is used. The cell-centered schemes using least-square face gradient reconstruction have more compact stencils with a complexity similar to the complexity of the node-centered scheme. For simulations on highly anisotropic curved grids, the least-square methods have to be amended either by introducing a local mapping of the surface anisotropy or modifying the scheme stencil to reflect the direction of strong coupling.

Diskin, Boris↗

A short pulse of mechanical force induces gene expression and growth in MC3T3-E1 osteoblasts via an ERK 1/2 pathway

Physiological mechanical loading is crucial for maintenance of bone integrity and architecture. We have calculated the strain caused by gravity stress on osteoblasts and found that 4-30g corresponds to physiological levels of 40-300 microstrain. Short-term gravity loading (15 minutes) induced a 15-fold increase in expression of growth-related immediate early gene c-fos, a 5-fold increase in egr-1, and a 3-fold increase in autocrine bFGF. The non-growth-related genes EP-1, TGF-beta, and 18s were unaffected by gravity loading. Short-term physiological loading induced extracellular signal-regulated kinase (ERK 1/2) phosphorylation in a dose-dependent manner with maximum phosphorylation saturating at mechanical loading levels of 12g (p < 0.001) with no effect on total ERK. The phosphorylation of focal adhesion kinase (FAK) was unaffected by mechanical force. g-Loading did not activate P38 MAPK or c-jun N-terminal kinase (JNK). Additionally, a gravity pulse resulted in the localization of phosphorylated ERK 1/2 to the nucleus; this did not occur in unloaded cells. The induction of c-fos was inhibited 74% by the MEK1/2 inhibitor U0126 (p < 0.001) but was not affected by MEK1 or p38 MAPK-specific inhibitors. The long-term consequence of a single 15-minute gravity pulse was a 64% increase in cell growth (p < 0.001). U0126 significantly inhibited gravity-induced growth by 50% (p < 0.001). These studies suggest that short periods of physiological mechanical stress induce immediate early gene expression and growth in MC3T3-E1 osteoblasts primarily through an ERK 1/2-mediated pathway.

NASA Discipline Cell Biology↗