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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 91 records · Page 5
All sourcesNASA NTRSDOE OSTI
DOE OSTI2017

An evaluation of in-line component process modules

The purpose of this paper is to discuss the analysis of abnormal configurations of in-line components, tanks and pumps in support of the integration of Criticality Safety into the Uranium Processing Facility (UPF) at Y-12 National Security Complex (Y-12). In-line components are components that are used in solution piping systems, including instrumentation, valves, pumps, and other general-use equipment. Mounted on self-contained skids/modules, in-line components (instruments, seal pots, level switches, etc.), tanks, and pumps are associated with a wide variety of the UPF processes. Using computer generated models expected to bound abnormal conditions for process module configurations, this report evaluates the impact of loss of spacing between in-line components in in-line component arrays and the effects of abnormal events. All fissile materials are considered to have a {sup 235}U enrichment of 100% and full theoretical density of 18.81 g/cm{sup 3} to conservatively represent the maximum credible enrichment available. Water and concrete were utilized to account for the construction materials associated with the skids and other reflective surfaces. Uranyl nitrate, was evaluated over the range of 0 to 550 g U/L for various normal and abnormal configurations of components mounted on skids. Abnormal events included fissile spills, sprinkler activation, and loss of spacing due to a seismic event. The results from this analysis provide a basis that supports development of nuclear safety design criteria, which generates standardized volume limits expected to bound the actual internal volume of the planned components. The results also provide a basis for consistent Nuclear Criticality Safety (NCS) control of in-line components, pumps, and tanks, for the ultimate development of Criticality Safety Process Studies in the UPF. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2016

The effects of the small-scale DM power on the cosmological neutral hydrogen (HI) distribution at high redshifts

The particle nature of dark matter remains a mystery. In this paper, we consider two dark matter models—Late Forming Dark Matter (LFDM) and Ultra-Light Axion (ULA) models—where the matter power spectra show novel effects on small scales. The high redshift universe offers a powerful probe of their parameters. In particular, we study two cosmological observables: the neutral hydrogen (HI) redshifted 21-cm signal from the epoch of reionization, and the evolution of the collapsed fraction of HI in the redshift range 2 < z < 5. We model the theoretical predictions of the models using CDM-like N-body simulations with modified initial conditions, and generate reionization fields using an excursion set model. The N-body approximation is valid on the length and halo mass scales studied. We show that LFDM and ULA models predict an increase in the HI power spectrum from the epoch of reionization by a factor between 2–10 for a range of scales 0.1 < k < 4 Mpc{sup −1}. Assuming a fiducial model where a neutral hydrogen fraction x-bar {sub HI} = 0.5 must be achieved by z = 8, the reionization process allows us to put approximate bounds on the redshift of dark matter formation z{sub f} > 4 × 10{sup 5} (for LFDM) and the axion mass m{sub a} > 2.6 × 10{sup −23} eV (for ULA). The comparison of the collapsed mass fraction inferred from damped Lyman-α observations to the theoretical predictions of our models lead to the weaker bounds: z{sub f} > 2 × 10{sup 5} and m{sub a} > 10{sup −23} eV. These bounds are consistent with other constraints in the literature using different observables; we briefly discuss how these bounds compare with possible constraints from the observation of luminosity function of galaxies at high redshifts. In the case of ULAs, these constraints are also consistent with a solution to the cusp-core problem of CDM.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

AI-Based Analytics and Energy Modeling Framework for Characterizing Urban Energy Systems

Developing location-specific district energy models is essential for understanding energy patterns and supporting efficient management and planning decisions. However, accurately characterizing these models remains challenging due to gaps in building characteristics and labor-intensive traditional modeling workflows. To address these challenges, we develop an AI-based framework that integrates top-down and bottom-up building energy data to automate urban energy model characterization. The framework trains multimodal deep learning models using heterogeneous ResStockTM datasets to infer missing building characteristics from varying levels of known information and generate simulation-ready inputs for district-scale energy modeling. It also employs a conditioning-based injection approach to generate ”what-if” scenarios, enabling users to explore retrofit, efficiency, and technology-upgrade pathways. Integrated within URBANoptTM, a bottom-up district energy modeling platform for simulating co-located buildings, the framework infers detailed building-level inputs required for bottom-up simulations. Both localized and generalized AI models are developed to learn relationships across categorical, numerical, and time-series data, enabling reconstruction of missing attributes and generation of targeted upgrade scenarios. We demonstrate this methodology on a residential neighborhood in Baltimore, MD, assessing internal consistency against ResStock reference data and URBANopt simulation, and comparing selected attributes against real-world building characteristics. Results show strong overall predictive accuracy in data completion and scenario generation, with localized and generalized models offering complementary trade-offs between precision and scalability. Overall, our automated framework streamlines energy modeling and provides a reliable framework for urban building energy characterization.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2022

Generating Ectropis obliqua axenic larvae in support of functional microbiome studies

Abstract Ectropis obliqua Prout (Lepidoptera: Geometridae) is a serious leaf‐eating pest in tea gardens throughout China, with rich bacterial communities in the larval gut. Few studies have investigated whether these bacteria play an important role in growth, development, and adaptability of E. obliqua . Axenic larval models are a useful tool for the study of interactions between gut bacteria and host insects. At present, artificial diet and antibiotics are typically used to remove larval gut bacteria for study; however, this method may change the natural food of insects and the habitat provided by their host plants, and cannot completely eliminate insect gut bacteria. Therefore, in order to establish an axenic insect feeding model, we first investigated the effects of egg age, different disinfectant concentration, and treatment time on the eggs of E. obliqua through orthogonal experiments. Next, we fed E. obliqua larvae tissue‐cultured tea seedlings under aseptic conditions. Thus, we successfully generated a feeding model of gut axenic larvae in the laboratory. Based on it, we then compared the mortality of axenic and non‐axenic E. obliqua larvae infected with the entomopathogenic fungus Beauveria bassiana (Balsamo) Vuill. These results demonstrated the feasibility of this axenic larval model and that B. bassiana is a broad‐spectrum entomogenous fungus with a toxic effect on E. obliqua .

Su, Qingqing↗
DOE OSTI2019

Predicting CO 2 Plume Migration in Heterogeneous Formations Using Conditional Deep Convolutional Generative Adversarial Network

Numerical simulation of flow and transport in heterogeneous formations has long been studied, especially for uncertainty quantification and risk assessment. The high computational cost associated with running large-scale numerical simulations in a Monte Carlo sense has motivated the development of surrogate models, which aim to capture the important input-output relations of physics-based models but require only a fraction of the cost of full model runs. In this work, we formulate a conditional deep convolutional generative adversarial network (cDC-GAN) surrogate model to learn the dynamic functional mappings in multiphase models. The cDC-GAN belongs to a class of semisupervised learning methods that can be used to learn the data generation processes. Like the original GAN, a main strength of the cDC-GAN is that it includes a self-training scheme for improving the quality of generative modeling in a game theoretic framework, without requiring extensive statistical knowledge and assumptions on input data distributions. In particular, our cDC-GAN model is designed to learn cross-domain mappings between high-dimensional input (e.g., permeability) and output (e.g., phase saturations) pairs, with the ability to incorporate conditioning information (e.g., prediction time). As a use case, we demonstrate the performance of cDC-GAN for predicting the migration of carbon dioxide (CO 2 ) plume in heterogeneous carbon storage reservoirs, which has both numerical and practical significance because of the safe storage requirements now mandated in many countries. Results show that cDC-GAN achieves high accuracy in predicting the spatial and temporal evolution patterns of the injected CO 2 plume, as compared to the original results obtained using a compositional reservoir simulator. The performance of cDC-GAN models, trained using the same number of training samples, stays relatively robust when the level of spatial heterogeneity is increased. Our cDC-GAN is pattern based and is not limited by the underlying physics. Thus, it provides a general framework for developing surrogate models, and for conducting uncertainty analyses for a wide range of physics-based models used in both groundwater and subsurface energy exploration applications.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Unified Wind-Wave Growth and Spectrum Functions for All Water Depths: Field Observations and Model Results

Abstract Wind-wave development is governed by the fetch- or duration-limited growth principle that is expressed as a pair of similarity functions relating the dimensionless elevation variance (wave energy) and spectral peak frequency to fetch or duration. Combining the pair of similarity functions, the fetch or duration variable can be removed to form a dimensionless function of elevation variance and spectral peak frequency, which is interpreted as the wave energy evolution with wave age. The relationship is initially developed for quasi-neural stability and quasi-steady wind forcing conditions. Further analyses show that the same fetch, duration, and wave-age similarity functions are applicable to unsteady wind forcing conditions, including rapidly accelerating and decelerating mountain gap wind episodes and tropical cyclone (TC) wind fields. Here it is shown that with the dimensionless frequency converted to dimensionless wavenumber using the surface wave dispersion relationship, the same similarity function is applicable in all water depths. Field data collected in shallow to deep waters and mild to TC wind conditions and synthetic data generated by spectrum model computations are assembled to illustrate the applicability. For the simulation work, the finite-depth wind-wave spectrum model and its shoaling function are formulated for variable spectral slopes. Given wind speed, wave age, and water depth, the measured and spectrum-computed significant wave heights and the associated growth parameters are in good agreement in forcing conditions from mild to TC winds and in all depths from deep ocean to shallow lake. Significance Statement This paper presents a growth function and spectrum model to describe wind-wave development in all water depths. Their applicability covers a wide range of wind forcing conditions including steady, accelerating, decelerating, and tropical cyclone events. Support for the unified spectrum model and growth function is presented with field observations and numerical computations.

Hwang, Paul A.↗
DOE OSTI2016

Designing and testing inflationary models with Bayesian networks

Even simple inflationary scenarios have many free parameters. Beyond the variables appearing in the inflationary action, these include dynamical initial conditions, the number of fields, and couplings to other sectors. These quantities are often ignored but cosmological observables can depend on the unknown parameters. We use Bayesian networks to account for a large set of inflationary parameters, deriving generative models for the primordial spectra that are conditioned on a hierarchical set of prior probabilities describing the initial conditions, reheating physics, and other free parameters. We use N{sub f}-quadratic inflation as an illustrative example, finding that the number of e-folds N{sub *} between horizon exit for the pivot scale and the end of inflation is typically the most important parameter, even when the number of fields, their masses and initial conditions are unknown, along with possible conditional dependencies between these parameters.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Evaluating the Lagrangian Evolution of Subtropical Low Clouds in GCMs Using Observations: Mean Evolution, Time Scales, and Responses to Predictors

In this work, a Lagrangian framework is developed to show the daily-scale time evolution of low clouds over the eastern subtropical oceans. An identical framework is applied to two general circulation models (GCMs): the CAM5 and UKMET and a set of satellite observations. This approach follows thousands of parcels as they advect downwind in the subtropical trade winds, comparing cloud evolution in time and space. This study tracks cloud cover, in-cloud liquid water path (CLWP), droplet concentration $N_d$, planetary boundary layer (PBL) depth, and rain rate as clouds transition from regions with predominately stratiform clouds to regions containing mostly trade cumulus. The two models generate fewer clouds with greater $N_d$ relative to observations. Models show stronger Lagrangian cloud cover decline and greater PBL deepening when compared with observations. In comparing frequency distributions of cloud variables over time, it is seen that models generate increasing frequencies of nearly clear conditions at the expense of overcast conditions, whereas observations show transitions from overcast to cloud amounts between 50% and 90%. Lagrangian decorrelation time scales ($\mathcal{e}$-folding time $\tau$) of cloud cover and CLWP are between 11 and 19 h for models and observations, although they are a bit shorter for models. A Lagrangian framework applied here resolves and compares the time evolution of cloud systems as they adjust to environmental perturbations in models and observations. Increasing subsidence in the overlying troposphere leads to declining cloud cover, CLWP, PBL depth, and rain rates in models and observations. Modeled cloud responses to other meteorological variables are less consistent with observations, suggesting a need for continuing mechanical improvements in GCMs.

58 GEOSCIENCES↗
DOE OSTI2025

A comparison of probabilistic generative frameworks for molecular simulations

Generative artificial intelligence is now a widely used tool in molecular science. Despite the popularity of probabilistic generative models, numerical experiments benchmarking their performance on molecular data are lacking. Here, in this work, we introduce and explain several classes of generative models, broadly sorted into two categories: flow-based models and diffusion models. We select three representative models: neural spline flows, conditional flow matching, and denoising diffusion probabilistic models, and examine their accuracy, computational cost, and generation speed across datasets with tunable dimensionality, complexity, and modal asymmetry. Our findings are varied, with no one framework being the best for all purposes. In a nutshell, (i) neural spline flows do best at capturing mode asymmetry present in low-dimensional data, (ii) conditional flow matching outperforms other models for high-dimensional data with low complexity, and (iii) denoising diffusion probabilistic models appear the best for low-dimensional data with high complexity. Our datasets include a Gaussian mixture model and the dihedral torsion angle distribution of the Aib9 peptide, generated via a molecular dynamics simulation. We hope our taxonomy of probabilistic generative frameworks and numerical results may guide model selection for a wide range of molecular tasks.

Artificial intelligence↗
DOE OSTI2023

Pynta-An Automated Workflow for Calculation of Surface and Gas-Surface Kinetics

Many important industrial processes rely on heterogeneous catalytic systems. However, given all possible catalysts and conditions of interest, it is impractical to optimize most systems experimentally. Automatically generated microkinetic models can be used to efficiently consider many catalysts and conditions. However, these microkinetic models require accurate estimation of many thermochemical and kinetic parameters. Manually calculating these parameters is tedious and error prone, involving many interconnected computations. Here, we present Pynta, a workflow software for automating the calculation of surface and gas–surface reactions. Pynta takes the reactants, products, and atom maps for the reactions of interest, generates sets of initial guesses for all species and saddle points, runs all optimizations, frequency, and IRC calculations, and computes the associated thermochemistry and rate coefficients. It is able to consider all unique adsorption configurations for both adsorbates and saddle points, allowing it to handle high index surfaces and bidentate species. Pynta implements a new saddle point guess generation method called harmonically forced saddle point searching (HFSP). HFSP defines harmonic potentials based on the optimized adsorbate geometries and which bonds are breaking and forming that allow initial placements to be optimized using the GFN1-xTB semiempirical method to create reliable saddle point guesses. This method is reaction class agnostic and fast, allowing Pynta to consider all possible adsorbate site placements efficiently. We demonstrate Pynta on 11 diverse reactions involving monodenate, bidentate, and gas-phase species, many distinct reaction classes, and both a low and a high index facet of Cu. Our results suggest that it is very important to consider reactions between adsorbates adsorbed in all unique configurations for interadsorbate group transfers and reactions on high index surfaces.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2017

Analyses Supporting Design Review of TREAT Multi-SERTTA Experiment Test Vehicle

The Transient Test Reactor (TREAT) Facility was designed to evaluate nuclear fuels and structural materials under simulated nuclear excursion and transient power/cooling mismatch situations that could be encountered in nuclear reactors [1]. It was historically operated from 1959 through 1994; ongoing activities at Idaho National Laboratory (INL) include resumption of transient testing capabilities to generate experimental data suitable to validate advanced modeling and simulation of these transient conditions, supporting current and next generation power reactor design and nuclear safety [2]. The resumption of transient testing requires new experiment vehicle designs to satisfy testing needs. The most developed experiment test vehicle candidate in TREAT’s arsenal will be the Multi-SERTTA (Static Environment Rodlet Transient Test Apparatuses) [3], which accommodates up to four concurrent rodlets under separate environmental conditions. An overview of the Multi-SERTTA, which would be placed at the center of the TREAT core during use, is shown in Figure 1. In the current design, all four rodlet test vessels are identical except for flux shaping collar material content to meet design needs. As the date rapidly approaches for TREAT restart, there is a need to have the Multi-SERTTA design approved and tested. Test experiments are an integral component of TREAT operations, and will be integrated among initial restart testing and supporting core reactor physics measurements. An integral step in finalization of any test vehicle design for TREAT is the hosting and resolution of a formal design review.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2025

PSA 2025 Presentation: "Modeling and Sensitivity Analysis of a Generation IV Pebble Bed Reactor Using MELCOR 2.2"

Accompanying the advancement of reactor technologies is the need for computational modeling and simulation to predict their behavior under normal operating conditions and accident scenarios. New Generation IV reactor designs which employ non-conventional fuel have a particular need for modeling the behavior and release of radionuclides and other material from the fuel. In this work, MELCOR version 2.2, a system-level safety and accident scenario code developed by Sandia National Laboratories, was used to model a 200-MWth pebble bed modular reactor and calculate the inventories of circulating and deposited graphite, metal dust, and elemental components released from the fuel elements. A base case modeling the reactor under standard operating conditions was calculated using MELCOR and the inventories were extrapolated to 30 years of operation time using a logarithmic regression fit. A sensitivity analysis was also performed in which several key parameters for the base case model were modified to explore the effect of these changes on the inventories calculated by MELCOR. A set of transient scenario simulations for a depressurized loss of forced cooling (DLOFC) accident were also performed. The results of the sensitivity analysis and transient simulations are reported and discussed in relation to the modeling techniques used for this study.

22 - GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2016

Collaborative Proposal: Improving Decadal Prediction of Arctic Climate Variability and Change Using a Regional Arctic System Model (RASM)

RASM is a multi-disciplinary project, which brings together researchers from six state universities, one military postgraduate school, and one DoE laboratory to address the core modeling objectives of the arctic research community articulated in the Arctic System Modeling report by Roberts et al. (2010b). This report advocates the construction of a regional downscaling tool to generate probabilistic decadal projections of Greenland ice sheet retreat, evolution of arctic sea ice cover, changes in land surface vegetation, and regional processes leading to arctic amplification. Unified coupled models such as RASM are ideal for this purpose because they simulate fine-scale physics, essential for the realistic representation of intra-annual variability, in addition to processes fundamental to long term climatic shifts (Hurrell et al. 2009). By using RASM with boundary conditions from a global model, we can generate many-member ensembles essential for understanding uncertainty in regional climate projections (Hawkins and Sutton 2009). This probabilistic approach is computationally prohibitive for high-resolution global models in the foreseeable future, and also for regional models interactively nested within global simulations. Yet it is fundamental for quantifying uncertainty in decadal forecasts to make them useful for decision makers (Doherty et al. 2009). For this reason, we have targeted development of ensemble generation techniques as a core project task (Task 4.5). Environmental impact assessment specialists need high-fidelity regional ensemble projections to improve the accuracy of their work (Challinor et al. 2009; Moss et al. 2010). This is especially true of the Arctic, where economic, social and national interests are rapidly reshaping the high north in step with regional climate change. During the next decade, considerable oil and gas discoveries are expected across many parts of the marine and terrestrial Arctic (Gautier et al. 2009), the economics of the Northern Sea Route will steadily improve (Arctic Council 2009), and sovereign claims over the Arctic Ocean will increasingly be subject to international negotiations (Proelss 2009). Issues such as these have led to an expanding demand for Arctic climate projections to aid national and commercial decisions. However, detailed information from existing models is lacking. RASM will enhance the existing Arctic system modeling capabilities and align them with the scientific and societal needs outlined above. The science involved in the development of RASM will be integrated with teaching and training at a few different levels. RASM PIs will supervise at least six postdoctoral and doctoral students with additional involvement of undergraduate research assistants. RASM postdoctoral fellows and graduate trainees will benefit from being a part of a large, collaborative, and multi-disciplinary research projects employing state-of-the-art modeling and computational tools. They will also have the opportunity to contribute to the UTEP-led education and outreach effort developed specifically for RASM. The UTEP team will use RASM as a platform for education and outreach. First, we will develop products for public dissemination, such as curriculum units, lesson plans and other materials (simulations, movies, and images) for use by students and teachers in high school and university classrooms. Second, we will facilitate bringing RASM PIs, postdocs, and graduate students into the classroom, through electronic mentorship and by contributing content via online lectures and presentations. Third, by the use of problem-based learning (PBL) approaches, we will provide real-world scenarios and problems enabling students to do research and develop position papers or presentations on topics related to RASM. (Problem-based learning is a student-centered, inquiry-based approach in which students work in teams to solve challenging, open-ended problems.) Fourth, we will develop teacher-training materials that will be developed into workshops (face-to-face or online) to help teachers understand how to use the materials we supply. Overall, we will provide a broad, and long-term RASM program for education and outreach. RASM education and outreach activities will target underrepresented populations - in particular, Hispanic students and teachers. For example, the UTEP student body is more than 70 percent Hispanic and 55 percent female, and the majority of students are the first in their families to attend college. Students from underrepresented groups will be given the chance to expand their understanding of the different scientific knowledge and processes associated with RASM. We will develop an eye-catching RASM website to include information about the project, model results and educational materials, and lists of RASM publications and presentations.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Applying Particle Swarm Optimization and Extended Kalman Filtering to Model Kaplan Generation Dynamics for Hydropower Systems

Variable renewable generation is increasing the need for hydropower plants to provide fast and flexible grid support, which places new demands on plant-level dynamic models used for monitoring, control, and operational decision-making. This need is especially important for hydroelectric systems, where turbine and generator dynamics are strongly coupled, nonlinear, and time-varying, making accurate real-time representation difficult. To address this problem, this paper develops a digital twin (DT) framework for a synchronous generator–Kaplan turbine system using an explicit separation of slow turbine dynamics and fast generator dynamics. The turbine subsystem is represented by a six-coefficient model, whose parameters are identified offline using particle swarm optimization, while the generator subsystem is updated online through an extended Kalman filter for real-time state and parameter estimation. These models are integrated within a closed-loop simulation that includes a proportional–integral–derivative–double-derivative governor and excitation system, allowing the DT to track plant behavior under realistic operating conditions. Unlike prior studies that treat turbine and generator modeling separately or rely mainly on simulated inputs, the proposed framework is validated using real operational data from a hydropower plant. Results show that the DT reproduces terminal voltage, active power, and reactive power with a normalized root mean square error of approximately 5%. This hybrid offline–online formulation constitutes the main contribution of the work, providing an adaptive and practically deployable DT for hydropower systems with direct relevance to control improvement, performance monitoring, and grid-support applications under high renewable penetration.

13 HYDRO ENERGY↗
DOE OSTI2026

Lessons Learned from Ecosystem-Scale Experimental Field Studies (Workshop Report)

Efforts to understand and predict ecosystem responses to environmental change require long-term, large-scale, spatially representative experiments and observations that capture natural variability, test predictive models, and generate transferable knowledge. Such studies are indispensable for unraveling the complexities of terrestrial ecosystems and their responses to disturbances and evolving environmental conditions, while generating the data necessary for developing mechanistic models and predictive tools that inform decision-making processes. Having a rich history of designing and executing large-scale ecosystem experiments, the U.S. Department of Energy’s Environmental System Science program convened a workshop in January 2025 that brought together leaders in the field to distill critical lessons from decades of experience in large-scale experiments. The workshop aimed to (1) provide an ecosystem experiment primer for best practices, thus ensuring a high scientific return on investment for funding agencies, and (2) offer a robust framework for the design and management of future research initiatives. This report synthesizes insights and experiences from workshop participants and is structured to capture the entire research life cycle, from goal setting and design to operations, adaptive management, team dynamics, collaborations, and the often overlooked aspect of decommissioning. By synthesizing decision-making and lessons learned across diverse research approaches, the report aims to provide a template of essential factors to consider when designing successful long-term, large-scale ecosystem experiments.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Geometry-complete diffusion for 3D molecule generation and optimization

Abstract Generative deep learning methods have recently been proposed for generating 3D molecules using equivariant graph neural networks (GNNs) within a denoising diffusion framework. However, such methods are unable to learn important geometric properties of 3D molecules, as they adopt molecule-agnostic and non-geometric GNNs as their 3D graph denoising networks, which notably hinders their ability to generate valid large 3D molecules. In this work, we address these gaps by introducing the Geometry-Complete Diffusion Model (GCDM) for 3D molecule generation, which outperforms existing 3D molecular diffusion models by significant margins across conditional and unconditional settings for the QM9 dataset and the larger GEOM-Drugs dataset, respectively. Importantly, we demonstrate that GCDM’s generative denoising process enables the model to generate a significant proportion of valid and energetically-stable large molecules at the scale of GEOM-Drugs, whereas previous methods fail to do so with the features they learn. Additionally, we show that extensions of GCDM can not only effectively design 3D molecules for specific protein pockets but can be repurposed to consistently optimize the geometry and chemical composition of existing 3D molecules for molecular stability and property specificity, demonstrating new versatility of molecular diffusion models. Code and data are freely available on GitHub .

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2018

Extracellular matrix protein DMP1 suppresses osteogenic differentiation of Mesenchymal Stem Cells

Highlights: • Extracellular matrix protein DMP1 suppresses MSCs osteogenic differentiation. • DMP1 works not only in osteoblasts and osteocytes, but also in MSCs. Mesenchymal Stem Cells (MSCs) are self-renewing and multipotent stem cells which was investigated for diverse clinical applications. However, complex mechanism of MSCs fate determination is still not fully disclosed. Extracellular matrix (ECM) proteins contribute to maintain MSCs stemness by providing extracellular microenvironment. Increasing evidences show that ECM proteins could also regulate the fate of MSCs directly. Dentin matrix protein 1 (DMP1) is an ECM protein enrich in bone tissue and terminal cells, which well-known in promoting osteoblasts and osteocytes maturation, and facilitate mineralization. Recently, our experiment indicated that DMP1 was also expressed in MSCs of long bone. In present study, it is found that DMP1 expressed in Prx1 positive MSCs. And, DMP1 is down-regulated in early osteoblasts and up-regulated again in mature osteoblasts. DMP1 conditional knockout mice model under Prx1cre was generated to explore whether DMP1 regulates MSCs osteogenic differentiation. Specific ablation of DMP1 in Prx1 positive MSCs increased bone mass in vivo and promoted osteoblasts activity in vitro. This study provides a new understanding of DMP1's function in regulation of osteogenesis: not only an enhancer of bone formation, but also a negative regulator of MSCs differentiation in bone.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2024

Improved subseasonal-to-seasonal precipitation prediction of climate models with nudging approach for better initialization of Tibetan Plateau-Rocky Mountain Circumglobal wave train and land surface conditions

Abstract Reliable subseasonal-to-seasonal (S2S) precipitation prediction is highly desired due to the great socioeconomical implications, yet it remains one of the most challenging topics in the weather/climate prediction research area. As part of the Impact of Initialized Land Temperature and Snowpack on Sub-seasonal to Seasonal Prediction (LS4P) project of the Global Energy and Water Exchanges (GEWEX) program, twenty-one climate models follow the LS4P protocol to quantify the impact of the Tibetan Plateau (TP) land surface temperature/subsurface temperature (LST/SUBT) springtime anomalies on the global summertime precipitation. We find that nudging towards reanalysis winds is crucial for climate models to generate atmosphere and land surface initial conditions close to observations, which is necessary for meaningful S2S applications. Simulations with nudged initial conditions can better capture the summer precipitation responses to the imposed TP LST/SUBT spring anomalies at hotspot regions all over the world. Further analyses show that the enhanced S2S prediction skill is largely attributable to the substantially improved initialization of the Tibetan Plateau-Rocky Mountain Circumglobal (TRC) wave train pattern in the atmosphere. This study highlights the important role that initial condition plays in the S2S prediction and suggests that data assimilation technique (e.g., nudging) should be adopted to initialize climate models to improve their S2S prediction.

54 ENVIRONMENTAL SCIENCES↗