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Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg

The domain of Archaea has gathered significant interest for its ecological and biotechnological potential and its role in helping us to understand the evolutionary history of Eukaryotes. In comparison to the bacterial domain, the number of adequately described members in Archaea is relatively low, with less than 1000 species described. It is not clear whether this is solely due to the cultivation difficulty of its members or, indeed, the domain is characterized by evolutionary constraints that keep the number of species relatively low. Based on molecular evidence that bypasses the difficulties of formal cultivation and characterization, several novel clades have been proposed, enabling insights into their metabolism and physiology. Given the extent of global sampling and sequencing efforts, it is now possible and meaningful to question the magnitude of global archaeal diversity based on molecular evidence. To do so, we extracted all sequences classified as Archaea from 500 thousand amplicon samples available in public repositories. After processing through our highly conservative pipeline, we named this comprehensive resource the ‘Global Archaea Diversity’ (GAD), which encompassed nearly 3 million molecular species clusters at 97% similarity, and organized it into over 500 thousand genera and nearly 100 thousand families. Saline environments have contributed the most to the novel taxa of this previously unseen diversity. The majority of those 16S rRNA gene sequence fragments were verified by matches in metagenomic datasets from IMG/M. These findings reveal a vast and previously overlooked diversity within the Archaea, offering insights into their ecological roles and evolutionary importance while establishing a foundation for the future study and characterization of this intriguing domain of life.

59 BASIC BIOLOGICAL SCIENCES

Data integration in multi-sensor based robotic workstations

A relaxation labeling algorithm is developed. The major advantage of this algorithm over the existing ones is that the mathematic operation is simplified. The simplification eases the analysis of the convergence properties. Both the theoretical and application aspects of the proposed algorithm are investigated. The local convergence properties of a labeling process with n labels and m labels are established. The investigation of the interaction among the nodes in a multinode labeling process reveals some insight into the mathematical issues involved in the relaxation operations.

Chen, Qin

Human Dimensions of Deforestation and Regrowth in the Brazilian Amazon: Integrating Data from Satellites, Demographic Censuses, and Field Surveys

This report summarizes research activities and products from a collaborative project on the "Human Dimensions of Deforestation and Regrowth in the Brazilian Amazon," awarded to Charles H. Wood (PI; Department of Sociology, University of Texas at Austin, now in the Center for Latin American Studies, University of Florida), Steven E. Sanderson (Co-PI; Department of Political Science, University of Florida, now Dean of Emory College, Emory University) and David L. Skole (Co-PI; Institute for Earth, Oceans and Space, University of New Hampshire, now in the Department of Geography and Basic Science Remote Sensing Initiative, Michigan State University).

Wood, Charles H.

Enabling and Enhancing Space Mission Success and Reduction of Risk through the Application of an Integrated Data Architecture

The engineering phases of design, development, test, and evaluation (DDT and E) and subsequent planning, preparation, and operation (Ops) of space vehicles in a complex and distributed environment requires massive and continuous flows of information across the enterprise and across temporal stages of the vehicle lifecycle. The resulting capabilities at each subsequent stage depend in part on the capture, preparation, storage, and subsequent provision of information from prior stages. The United States National Aeronautics and Space Administration (NASA) is currently designing a fleet of new vehicles that will replace the Space Shuttle and expand space operations and exploration capabilities. This includes the 2 stage human rated lift vehicle Ares 1 and its associated crew vehicle the Orion, and a service module; the heavy lift cargo vehicle, Ares 5, and an associated cargo stage known as the Earth Departure Stage; and a Lunar Lander vehicle that contains a descent stage, and ascent stage, and a habitation module. A variety of concurrent assorted ground operations infrastructure including software and facilities are also being developed, assorted technology and assembly designs and development for equipment such as EVA suits, life support systems, command and control technologies are also in the pipeline. The development is occurring in a distributed manner, with project deliverables being contributed by a large and diverse assortment of vendors and most space faring nations. Critical information about all of the components, software, and procedures must be shared during the DDT and E phases and then made readily available to the mission operations staff for access during the planning, preparation, and operations phases, and also need to be readily available for system to system interactions. The Constellation Data Systems Project (CxDS) is identifying the needs, and designing and deploying systems and processes to support these needs. This paper details the steps and processes that NASA is applying within the Constellation Program to manage this data and information, and to insure that the correct information is available, correctly annotated, and can be provisioned digitally to enhance response times, and support engineering analysis and anomaly resolution.

Brummett, Robert C.

Software Tool Integrating Data Flow Diagrams and Petri Nets

Data Flow Diagram - Petri Net (DFPN) is a software tool for analyzing other software to be developed. The full name of this program reflects its design, which combines the benefit of data-flow diagrams (which are typically favored by software analysts) with the power and precision of Petri-net models, without requiring specialized Petri-net training. (A Petri net is a particular type of directed graph, a description of which would exceed the scope of this article.) DFPN assists a software analyst in drawing and specifying a data-flow diagram, then translates the diagram into a Petri net, then enables graphical tracing of execution paths through the Petri net for verification, by the end user, of the properties of the software to be developed. In comparison with prior means of verifying the properties of software to be developed, DFPN makes verification by the end user more nearly certain, thereby making it easier to identify and correct misconceptions earlier in the development process, when correction is less expensive. After the verification by the end user, DFPN generates a printable system specification in the form of descriptions of processes and data.

Thronesbery, Carroll

Integrating Data from GRACE and Other Observing Systems for Hydrological Research and Applications

The Gravity Recovery and Climate Experiment (GRACE) mission provides a unique view of water cycle dynamics, enabling the only space based observations of water on and beneath the land surface that are not limited by depth. GRACE data are immediately useful for large scale applications such as ice sheet ablation monitoring, but they are even more valuable when combined with other types of observations, either directly or within a data assimilation system. Here we describe recent results of hydrological research and applications projects enabled by GRACE. These include the following: 1) global monitoring of interannual variability of terrestrial water storage and groundwater; 2) water balance estimates of evapotranspiration over several large river basins; 3) NASA's Energy and Water Cycle Study (NEWS) state of the global water budget project; 4) drought indicator products now being incorporated into the U.S. Drought Monitor; 5) GRACE data assimilation over several regions.

Rodell, M.

Model-Based Data Integration and Process Standardization Techniques for Fault Management: A Feasibility Study

This paper describes the theory and considerations in the application of model-based techniques to assimilate information from disjoint knowledge sources for performing NASA's Fault Management (FM)-related activities using the TEAMS® toolset. FM consists of the operational mitigation of existing and impending spacecraft failures. NASA's FM directives have both design-phase and operational-phase goals. This paper highlights recent studies by QSI and DST of the capabilities required in the TEAMS® toolset for conducting FM activities with the aim of reducing operating costs, increasing autonomy, and conforming to time schedules. These studies use and extend the analytic capabilities of QSI's TEAMS® toolset to conduct a range of FM activities within a centralized platform.

Haste, Deepak

Bringing Research to New Heights: How CASEI Integrates Data Curation, Discovery, and Education in Earth and Atmospheric Science

A challenging aspect of any project is finding all the relevant data and information needed to address the research objective. Searching for data and its contextual metadata can become overwhelming for both undergraduate and graduate students, potentially hindering their work and affecting the scientific discoveries that could be made in the long run. To ease this, the NASA Airborne Data Management Group (ADMG), part of the Interagency Implementation and Advanced Concepts Team (IMPACT), has developed the new Catalog of Archived Suborbital Earth science Investigations (CASEI). CASEI includes a web portal that users, be they professionals or students, can use to search, browse, discover, and locate relevant observations associated with NASA’s airborne and field campaigns. Users are able to query data in a variety of ways (via keywords, locations, timeframe, etc) from one online portal, minimizing the amount of time needed to search. CASEI also allows access to key contextual metadata and data from a wide array of Earth and Atmospheric Science topics such as aerosols and boundary layer processes, as well as ice and glacial properties or processes. Users are able to access the data via DOI links to data set landing pages. This presentation will demonstrate how CASEI can be used for classwork and student research. Teachers can provide CASEI to their students as a tool for their studies, or use it to find data themselves while constructing their curriculums. Additionally, users can leverage CASEI to learn about NASA’s Earth and Atmospheric Science research efforts and to find data relevant for assignments or other research projects. The metadata in CASEI has been carefully curated, and highlights important information about the campaigns and their data. Students can explore and learn about the scientific objectives of the campaigns, as well as descriptions of the campaign’s best research days. Having access to contextual metadata in an easy to understand way can help plant the seeds of new ideas in students at any point in their academic journey. From class projects to theses/dissertations and other research, CASEI is a valuable emerging tool for data discovery, giving access to all users and guiding researchers to NASA’s unique airborne data to answer the burning Earth Science questions of our time.

education