A practical guide to data management and sharing for biomedical laboratory researchers
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Python class for handling encrypted elements in a config file. Extension of ConfigParser. This class overides the 'get' method of ConfigParser replacing it with Fernet symmetric encryption so that you can safely store encrypted passwords in an ini file.
The general approach of the MONA project is depicted in Figure 1. The figure shows performance monitoring applied to an I/O workflow associated with a scientific simulation, with online measurements captured from this workflow informing methods for workflow reconfiguration and dynamic adjustment. The goal is to maintain suitable levels of Quality of Service for workflow execution, by understanding the underlying causes of workflow performance and behavior. One outcome will be workflow performance models able to characterize realistic workflows. Another outcome will be performance ‘mini-apps’ implementing such workflow behavior. Out of scope for this project are advanced methods for online workflow control.
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The Data Acquisition systems of particle physics experiments regularly push the boundaries of high-throughput computing, demanding low-latency collection of data from thousands of devices, collating data into time-sliced events, processing these events and making trigger decisions, and writing the selected data streams to disk. To accomplish these tasks, the DAQ Engineering and Operations department at Fermilab leverages multiple software libraries and builds reusable DAQ frameworks on top. These libraries must be delivered in well-defined bundles and are thoroughly tested for compatibility and functionality before being deployed to live detectors. We have several techniques used to ensure that a consistent set of dependencies can be delivered and re-created at need. We must also support active development of DAQ software components, ideally in an environment as close as possible to that of the detectors. This development often occurs across multiple packages which have to be built in concert and features tested in a consistent and reproducible manner. I will present our scheme for accomplishing these goals using Spack environments, bundle packages, and Github Actions-based CI.
Co-Author Voon Hui Lai, Australian National University, will be attending IUGG and presenting the work. The session of interested is "S05 - Advances in Earthquake and Explosion Monitoring Using Distributed Acoustic Sensing"
Presented by LRST at the eXtremeMAT Stakeholder Advisory Board Review Meeting, 10/15
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