Design and validation of refractory alloys using machine learning, CALPHAD, and experiments
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Synthetic microbial ecology has the potential to enhance the productivity and resiliency of biotechnology processes compared to approaches using single isolates. Engineering microbial consortia is challenging; however, one approach that has attracted significant attention is the creation of synthetic obligate mutualism using auxotrophic mutants that depend on each other for exchange or cross-feeding of metabolites. In this paper, we describe the integration of mutant library fitness profiling with mass spectrometry based exometabolomics as a method for constructing synthetic mutualism based on cross-feeding. Two industrially important species lacking known ecological interactions, Zymomonas mobilis and Escherichia coli, were selected as the test species. Amino acid exometabolites identified in the spent medium of Z. mobilis were used to select three corresponding E. coli auxotrophs (proA, pheA and IlvA), as potential E. coli counterparts for the coculture. A pooled mutant fitness assay with a Z. mobilis transposon mutant library was used to identify mutants with improved growth in the presence of E. coli. An auxotroph mutant in a gene (ZMO0748) with sequence similarity to cysteine synthase A (cysK), was selected as the Z. mobilis counterpart for the coculture. Exometabolomic analysis of spent E. coli medium identified glutathione related metabolites as potentially available for rescue of the Z. mobilis cysteine synthase mutant. Three sets of cocultures between the Z. mobilis auxotroph and each of the three E. coli auxotrophs were monitored by optical density for growth and analyzed by flow cytometry to confirm high cell counts for each species. Taken together, our methods provide a technological framework for creating synthetic mutualisms combining existing screening based methods and exometabolomics for both the selection of obligate mutualism partners and elucidation of metabolites involved in auxotroph rescue.
Abstract Theoretical studies have suggested that nonlinear effects can lead to ‘radio frequency (RF) condensation’, where an initially broad current profile can coalesce in islands when they reach sufficient width. In suitable conditions, RF condensation can ‘self-focus’ the driven current to the center of an island, improving stabilization efficiency and reducing control complexity. In unsuitable conditions, the effect can prematurely deplete the RF energy before it reaches the island center, impairing stabilization. It is predicted that the RF condensation effect can significantly impact reactor-scale tokamaks. This paper presents a set of simulations investigating the conditions under which RF condensation might be encountered in present-day tokamaks. For concreteness, the calculations use equilibrium reconstructions for two shots from DIII-D and AUG. The Current Condensation Amid Magnetic Islands (OCCAMI) simulation code has been used for this investigation. The code takes as its input a numerically specified axisymmetric EFIT equilibrium solution, and it perturbatively constructs a 3D field with an island embedded at the appropriate rational surface. In the OCCAMI code, the GENRAY code is used for ray tracing and for calculating the power deposition along a ray trajectory, and GENRAY is coupled self-consistently to a solution of the thermal diffusion equation in the island. The simulation results described in the paper illuminate the conditions required for experimental validation of the theory of RF condensation. The simulations also provide an explanation of why the effect was not noticed in experiments prior to the publication of theoretical papers on the subject.
A neutron-generator-based source of fission products (nuCARIBU) is being developed to replace the existing source at Argonne National Laboratory. Neutrons generated by reaction are thermalized in a compact polyethylene [(moderator and impinge on a thin 235 U foil to produce fission products. Experiments have been conducted to verify the nuCARIBU concept and simulation results using a 4 MeV, 0.16 µA proton beam from the ATLAS accelerator irradiating a LiF neutron production target and two different simplified versions of the nuCARIBU (C 2 H 4 ) n moderator with thicknesses of 3.81 cm and 1.91 cm separating it from the enriched 235 U fission foil. Here, the emitted γ-ray peaks of 1383.93 keV ( 92 Sr), 358.0 keV ( 104 Tc), 565.992 keV ( 134 Te), and 258.411 keV ( 138 Xe) obtained from fission products are used to determine the neutron-induced fission rates in the fission foil. The measured fission rates are in good agreement with those simulated using the PHITS Monte Carlo code with user-defined neutron production cross sections based on well-known cross section data. These experimental results, consistent with the simulations, show that the current 252 Cf source (CARIBU) can be replaced by the neutron induced fission source (nuCARIBU).
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Rapid expansion of renewable energy infrastructure is a key part of any global strategy to reduce the pace and severity of anthropogenic climate change, although the potential impacts of renewable energy infrastructure on wildlife are also becoming increasingly apparent. Bats appear vulnerable to population-level impacts from the cumulative effect of turbine-related fatalities at commercial wind energy facilities in North America, particularly as the industry continues to expand to meet renewable energy generation targets. Turbine curtailment is the most widely used and consistently effective method to reduce bat fatality rates and involves pitching turbine blades parallel to prevailing winds to restrict turbine rotation when turbines would otherwise be operating and capable of producing power. Recognizing the need to expand the wind industry while managing risk to bats highlights the need to understand and manage turbine-related impacts to bats more aggressively and strategically than the current use of blanket curtailment allows.
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An ozone data assimilation system has been developed at the Data Assimilation Office of the NASA/Goddard Space Flight Center to provide global three-dimensional analyzed ozone mixing ratio and total column ozone. The Total Ozone Mapping Spectrometer (TOMS) total column ozone and the Solar Backscatter Ultraviolet (SBUV) or SBUV/2 partial ozone profile data are assimilated. The analyzed winds from the Goddard Earth Observing System Data Assimilation System (GEOS-DAS) drive the ozone transport. Following every transport model timestep, the model prediction is combined with the observations using a global, physical-space based, statistical analysis scheme. Due to the smaller size of the ozone system than that of a global meteorological data assimilation system, new statistical analysis methodology, including anisotropic and flow-dependent forecast error correlation models, can be implemented and tested in the ozone system more easily. Sample results from the winter 1992 validation period are presented. There is a close agreement between the analyzed fields and the independent observations from ozone sondes and the Halogen Occultation Experiment (HALOE).
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Space Exploration missions requires the design and implementation of space networking that differs from terrestrial networks. In a space networking architecture, interplanetary communication protocols need to be designed, validated and evaluated carefully to support different mission requirements. As actual systems are expensive to build, it is essential to have a low cost method to validate and verify mission/system designs and operations. This can be accomplished through simulation. Simulation can aid design decisions where alternative solutions are being considered, support trade-studies and enable fast study of what-if scenarios. It can be used to identify risks, verify system performance against requirements, and as an initial test environment as one moves towards emulation and actual hardware implementation of the systems. We describe the development of Multi-mission Advanced Communications Hybrid Environment for Test and Evaluation (MACHETE) and its use cases in supporting architecture trade studies, protocol performance and its role in hybrid simulation/emulation. The MACHETE environment contains various tools and interfaces such that users may select the set of tools tailored for the specific simulation end goal. The use cases illustrate tool combinations for simulating space networking in different mission scenarios. This simulation environment is useful in supporting space networking design for planned and future missions as well as evaluating performance of existing networks where non-determinism exist in data traffic and/or link conditions.
In response to the recommendations made in the National Research Council' s Ear th Science and Applications 2007 Decadal Sur vey, NASA has initiated the Ear th Venture line of mission oppor tunities. The fir st orbital mission chosen for this competitively selected, cost and schedule constrained, Pr incipal Investigator -led oppor tunity is the CYclone Global Navigation Satellite System (CYGNSS). The goal of CYGNSS is to understand the coupling between ocean sur face proper ties, moist atmospher ic thermodynamics, radiation, and convective dynamics in the inner core of a tropical cyclone. The CYGNSS mission is compr ised of eight Low Ear th Obser ving (LEO) micr osatellites that use GPS bi-static scatterometry to measure ocean sur face winds.
The Coalition for Aerospace and Science (CAS) is hosting an exhibition on Capitol Hill on June 14, 2017, to highlight the contributions of CAS members to NASAs portfolio of activities. This exhibition represents an opportunity for an HFES members ground breaking work to be displayed and to build on support within Congress for NASAs human research program including in those areas that are of specific interest to the HFE community. The intent of this poster presentation is to demonstrate the positive outcome that comes from funding HFE related research on a project like the one exemplified by MIDAS-FAST.
In order to facilitate studies on the impact of the space environment on biological systems, we have developed a prototype of GEMM (Gene Expression Measurement Module) - an automated, miniaturized, integrated fluidic system for in-situ measurements of gene expression in microbial samples. The GEMM instrument is capable of (1) lysing bacterial cell walls, (2) extracting and purifying RNA released from cells, (3) hybridizing the RNA to probes attached to a microarray and (4) providing electrochemical readout, all in a microfluidics cartridge. To function on small, uncrewed spacecraft, the conventional, laboratory protocols for both sample preparation and hybridization required significant modifications. Biological validation of the instrument was carried out on Synechococcus elongatus, a photosynthetic cyanobacterium known for its metabolic diversity and resilience to adverse conditions. It was demonstrated that GEMM yielded reliable, reproducible gene expression profiles. GEMM is the only high throughput instrument that can be deployed in near future on space platforms other than the ISS to advance biological research in space. It can also prove useful for numerous terrestrial applications in the field.
In order for distributed systems to communicate reliably engineers standardize on communication rules (or protocols). Unforeseen behavior in communication protocols can push faults up to applications resulting in uncontrollable systems and should not be tolerated. However, while most modern protocols undergo extensive testing, rigorous formal methods, such as model checking,are rarely used due to complexity and massive incomputable state spaces.
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