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At least 91 records · Page 5

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DOE OSTI2019

Gene Determinants for Mercury Bioremediation as Revealed by Draft Genome Sequence Analysis of Stenotrophomonas sp. Strain MA5

A soilborne Stenotrophomonas sp. strain (MA5) that is resistant to mercury was isolated. A draft genome sequence-based analysis revealed a suite of gene determinants to resist mercury and other heavy metals, multidrug efflux, stress response, and membrane transport, and these provide cues to a suite of mechanisms that underpin cellular survival in contaminated soil.

Pathak, Ashish↗

DOE OSTI2020

Draft Genome Sequence of Mercury-Resistant Serratia sp. Strain SRS-8-S-2018

A mercury (Hg)-resistant Serratia sp. strain, SRS-8-S-2018, was isolated, followed by generation of its draft genome sequence, which indicated a genomic size of 5,323,630 bp composed of 5,261 coding sequences. A suite of genomic functions in strain SRS-8-S-2018 was identified, and these likely facilitate survival in a metalliferous soil habitat.

Gendy, Sherif↗

DOE OSTI2021

Draft Genome Sequence of Mycobacterium sp. Strain JC1 DSM 3803

Mycobacterium sp. strain JC1 DSM3803 is one of the few known bacteria predicted to possess the xylulose monophosphate (XuMP) pathway of C1 carbon assimilation. The draft genome is 7,921,603 bp with a GC content of 66.88% and will allow more in depth investigation of the bacterium’s unique metabolisms.

Thompson, Mitchell G.↗

DOE OSTI2020

Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots

Larkinella sp. strain BK230, a heterotrophic bacterium of the phylum Bacteroidetes , was isolated from the roots of a field-grown eastern cottonwood tree ( Populus deltoides ) located in Georgia. The draft 7.27-Mb genome has a G+C content of 53.4% and contains 6,026 coding sequences, including 41 tRNA genes.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

Draft genome sequence of Rossellomorea marisflavi DL-A, a malathion-degrading bacterium

This study presents the draft genome of Rossellomorea marisflavi DL-A, a malathion-degrading bacterium isolated from the North Oconee River in Athens, GA, USA. The DL-A genome is 4.27 Mb in size and comprises 4,271 coding sequences with proteins.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2019

Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens

Here, we report the draft genome sequences of three isolates of the wood-decaying white-rot basidiomycete fungus Dichomitus squalens. The genomes of these monokaryons were sequenced to provide more information on the intraspecies genomic diversity of this fungus and were compared to the previously sequenced genome of D. squalens LYAD-421 SS1.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2019

Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity

We report here the improved draft genome sequence of Pseudomonas poae strain A2-S9, a bacterium that was originally isolated from switchgrass plants and exhibited the capacity for plant growth promotion. Its genome has a size of 6.68 Mbp and a GC content of 61.3%.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Draft Genome Sequences of Switchgrass Diazotrophs

We report the draft genome sequences of five native nitrogen-fixing bacteria associated with roots of switchgrass isolated from the Tallgrass Prairies of Oklahoma. Nitrogen-fixing genes, including the nif cluster, are conserved across the Klebsiella and Kosakonia strains.

Jones, Lauren B.↗

DOE OSTI2019

Draft Genome Sequence of Bacillus coagulans MA-13, a Thermophilic Lactic Acid Producer from Lignocellulose

Bacillus coagulans MA-13 is an efficient lactic acid producer which withstands high concentrations of the growth inhibitors formed during the pretreatment of lignocellulosic feedstock. This draft genome sequence is expected to pave the way toward the understanding of mechanisms responsible for the robustness of MA-13 during simultaneous saccharification and fermentation.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2019

Draft Genome Sequence of Rhodococcus sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium

We report here the 4.9-Mb genome sequence of a quinoline-degrading bacterium, Rhodococcus sp. strain ATCC 49988. The draft genome data will enable the identification of genes and future genetic modification to enhance traits relevant to heteroaromatic compound degradation.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

High-Quality Draft Genome Sequence of the Siderophilic and Thermophilic Leptolyngbyaceae Cyanobacterium JSC-12

The siderophilic, thermophilic Leptolyngbyaceae cyanobacterium JSC-12 was isolated from a microbial mat in an iron-depositing hot spring. Here, we report the high-quality draft genome sequence of JSC-12, which may help elucidate the mechanisms of resistance to extreme iron concentrations in siderophilic cyanobacteria and lead to new remediation biotechnologies.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Draft Genome Sequence of Agrobacterium fabrum ARqua1

Agrobacterium fabrum ARqua1 is a hybrid of Agrobacterium fabrum C58C bearing the megaplasmid pRiA4b. ARqua1 is used by many plant researchers to generate transgenic roots. The draft genome of ARqua1 includes a 249,350-bp contig that likely covers all of pRiA4b, and it will be a valuable resource to plant biologists.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Draft genomes of two rhizosphere associated bacterial isolates from Tims Branch, a heavy metal contaminated wetland

Two bacterial isolates were recovered from wetland sediments from Tims Branch, a heavy metal contaminated wetland located at the Savannah River Site. Draft genomes of the two recovered isolates, Rhodoblastus strain 17X3 and Comamonas strain 17RB, were generated from Illumina MiSeq sequencing data.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2026

Draft Genome Sequences of 14 Bacterial Isolates from the Rhizosphere of Bioenergy Sorghum

We report the draft genomes of a collection of 15 bacteria, isolated from the rhizosphere soil of bioenergy sorghum (Sorghum bicolor (L.) Moench). These isolates belong to the genera, Acidovorax, Nocardioides, Agrobacterium, Peribacillus, Caulobacter, Cupriavidus, Pseudomonas, Rhizobium, Sphingomonas, Priestia, Dyadobacter, Roseomonas, Ideonella, and Bacillus.

Black, Grace S.↗

DOE OSTI2022

Draft Genome Sequence of Cupriavidus basilensis SRS, a Bacterium Isolated from Stream Sediments

Cupriavidus basilensis SRS was isolated from stream sediments from the Savannah River Site in South Carolina. Here, we report the draft genome sequence and annotation of Cupriavidus basilensis SRS. The genome contains 8,918,236 bp and 7,916 predicted protein-coding genes, with a total G+C content of 65.2%.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2020

Draft Genome Sequence of 2-Methylpyridine-, 2-Ethylpyridine-, and 2-Hydroxypyridine-Degrading Arthrobacter sp. Strain ATCC 49987

Here, we report the draft genome sequence of Arthrobacter sp. strain ATCC 49987, consisting of three contigs with a total length of 4.4 Mbp. Based on the genome sequence, we suggest reclassification of Arthrobacter sp. strain ATCC 49987 as Pseudarthrobacter sp. strain ATCC 49987.

2-hydroxypyridine↗

DOE OSTI2022

High-Quality Draft Genome Sequence of Fischerella thermalis JSC-11, a Siderophilic Cyanobacterium with Bioremediation Potential

Here, we report the draft genome sequence of the siderophilic cyanobacterium Fischerella thermalis JSC-11, which was isolated from an iron-depositing hot spring. JSC-11 has bioremediation potential because it is capable of both extracellular absorption and intracellular mineralization of colloidal iron. This genomic information will facilitate the exploration of JSC-11 for bioremediation.

Brown, Igor↗

DOE OSTI2021

Draft Genome Sequence of Schaalia odontolytica Strain ORNL0103, a Basibiont of “ Candidatus Saccharibacteria” HMT352

Here, we report the draft, nearly complete genome sequence of the human oral actinobacterium Schaalia odontolytica strain ORNL0103, which was isolated in association with “Candidatus Saccharibacteria” HMT352 strain ORNL0105. The genome was sequenced using a combination of Pacific Biosciences and Illumina platforms and encodes 1,948 proteins and 60 RNAs.

59 BASIC BIOLOGICAL SCIENCES↗