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At least 91 records · Page 5

Revising the Role of Cortical Cytoskeleton during Secretion: Actin and Myosin XI Function in Vesicle Tethering

In plants, secretion of cell wall components and membrane proteins plays a fundamental role in growth and development as well as survival in diverse environments. Exocytosis, as the last step of the secretory trafficking pathway, is a highly ordered and precisely controlled process involving tethering, docking, and fusion of vesicles at the plasma membrane (PM) for cargo delivery. Although the exocytic process and machinery are well characterized in yeast and animal models, the molecular players and specific molecular events that underpin late stages of exocytosis in plant cells remain largely unknown. Here, by using the delivery of functional, fluorescent-tagged cellulose synthase (CESA) complexes (CSCs) to the PM as a model system for secretion, as well as single-particle tracking in living cells, we describe a quantitative approach for measuring the frequency of vesicle tethering events. Genetic and pharmacological inhibition of cytoskeletal function, reveal that the initial vesicle tethering step of exocytosis is dependent on actin and myosin XI. In contrast, treatments with the microtubule inhibitor, oryzalin, did not significantly affect vesicle tethering or fusion during CSC exocytosis but caused a minor increase in transient or aborted tethering events. With data from this new quantitative approach and improved spatiotemporal resolution of single particle events during secretion, we generate a revised model for the role of the cortical cytoskeleton in CSC trafficking.

Zhang, Weiwei↗

Measurement of the W boson decay branching fraction ratio $\mathscr{B}$(W → cq)/$\mathscr{B}$(W →$q\bar{q}'$) in proton-proton collisions at $\sqrt{s}$ = 13 TeV

The most precise measurement to date of the W boson hadronic decay branching fraction ratio $R_{c}^{W} = \mathcal{B}(W \to cq) / \mathcal{B}(W \to q\bar{q}$) is presented. The measurement is based on a sample of proton-proton collision data from the CERN LHC collected by the CMS experiment at a center-of-mass energy of 13 TeV in 2016-2018 with an integrated luminosity of 138 fb$^{-1}$. The large cross section of top quark-antiquark production at the LHC offers a sizable high-purity sample of W bosons suitable for this measurement. Events with one charged lepton (electron or muon) and at least four jets, two tagged as bottom quark jets, are analyzed. Charm jets are tagged using the presence of a muon inside the jet. The result, $R_\mathrm{c}^\mathrm{W}$ = 0.489 $\pm$ 0.020, is consistent with the standard model prediction and is twice as precise as the current world-average value.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

General search for supersymmetric particles in scenarios with compressed mass spectra using proton-proton collisions at $\sqrt{s}$ = 13 TeV

A general search is presented for supersymmetric particles (sparticles) in scenarios featuring compressed mass spectra using proton-proton collisions at a center-of-mass energy of 13 TeV, recorded with the CMS detector at the LHC. The analyzed data sample corresponds to an integrated luminosity of 138 fb −1 . A wide range of potential sparticle signatures are targeted, including pair production of electroweakinos, sleptons, and top squarks. The search focuses on events with a high transverse momentum system from initial-state-radiation jets recoiling against a potential sparticle system with significant missing transverse momentum. Events are categorized based on their lepton multiplicity, jet multiplicity, number of 𝑏-tagged jets, and kinematic variables sensitive to the sparticle masses and mass splittings. The sensitivity extends to higher parent sparticle masses than previously probed at the LHC for production of pairs of electroweakinos, sleptons, and top squarks with mass spectra featuring small mass splittings (compressed mass spectra). The observed results demonstrate agreement with the predictions of the background-only model. Lower mass limits are set at 95% confidence level on production of pairs of electroweakinos, sleptons, and top squarks that extend to 325, 275, and 780 GeV, respectively, for the most favorable compressed mass regime cases.

Hadron colliders↗

Scintillation of liquid nitrogen

Liquid nitrogen is commonly used in cryogenic applications and is a promising medium for the direct immersion cooling of sensors used for nuclear and particle physics experiments. The scintillation properties of gaseous nitrogen are well-documented, but little is known about the scintillation of liquid nitrogen. If present, scintillation light from interactions of ambient radioactivity could produce backgrounds for rare event searches such as the direct detection of dark matter. Using a coincidence-tagged alpha decay, we demonstrate that liquid nitrogen exhibits measurable, albeit very faint, scintillation. Assuming the same scintillation wavelengths as gaseous nitrogen, we estimate a relative scintillation yield of $Y_{\liquidn}/Y^{\STP}_{\gasn} =$ \num[uncertainty-descriptors={stat,sys}]{0.0142(0.0005)(0.0030)} with respect to gaseous nitrogen at standard temperature and pressure. Considering the average scintillation yield from alpha decays in gaseous nitrogen, this implies a scintillation yield for alpha decays in liquid nitrogen of $Y_{\liquidn} = \qty[]{2.39(0.56)}{photons~per~MeV}$. To our knowledge this is the first measurement of scintillation in liquid nitrogen.

Pagani, Luca (ORCID:0000000234692581)↗

Measurement of J/psi Production near Threshold in J/psi -> µ+µ-

This dissertation presents a detailed analysis of J/psi photoproduction near the kinematic threshold in the J/psi -> µ+µ- decay channel, based on data collected by the GlueX experiment at Jefferson Lab. The study aims to probe the structure of the proton and the underlying mechanisms of heavy vector quarkonium photoproduction, contributing to a deeper understanding of Quantum Chromodynamics (QCD) in the non-perturbative regime. The measurement focuses on the total and differential cross-sections of J/psi photoproduction and explores various theoretical models, including two-gluon and three-gluon exchange, open-charm contributions, and potential exotic states like pentaquarks. The experimental setup, featuring a high-precision tagged photon beam and advanced particle identification techniques, allowed for the separation of J/psi events from background processes. The analysis of the J/psi -> µ+µ- channel yields cross-sections that complement previous measurements in the J/psi -> e+e- decay mode, providing new insights into gluon dynamics at low momentum transfer. This work also examines the systematic uncertainties and provides a comprehensive comparison of results with theoretical predictions, highlighting the role of gluon exchange mechanisms in the photoproduction process. The results presented in this dissertation help refine our understanding of proton structure and QCD dynamics, offering a robust dataset for future theoretical and experimental studies in hadronic physics.

Ebersole, Donavan [Florida State Univ., Tallahasse↗

Leveraging Topological Events in Tracking Graphs for Understanding Particle Diffusion

Abstract Single particle tracking (SPT) of fluorescent molecules provides significant insights into the diffusion and relative motion of tagged proteins and other structures of interest in biology. However, despite the latest advances in high‐resolution microscopy, individual particles are typically not distinguished from clusters of particles. This lack of resolution obscures potential evidence for how merging and splitting of particles affect their diffusion and any implications on the biological environment. The particle tracks are typically decomposed into individual segments at observed merge and split events, and analysis is performed without knowing the true count of particles in the resulting segments. Here, we address the challenges in analyzing particle tracks in the context of cancer biology. In particular, we study the tracks of KRAS protein, which is implicated in nearly 20% of all human cancers, and whose clustering and aggregation have been linked to the signaling pathway leading to uncontrolled cell growth. We present a new analysis approach for particle tracks by representing them as tracking graphs and using topological events – merging and splitting, to disambiguate the tracks. Using this analysis, we infer a lower bound on the count of particles as they cluster and create conditional distributions of diffusion speeds before and after merge and split events. Using thousands of time‐steps of simulated and in‐vitro SPT data, we demonstrate the efficacy of our method, as it offers the biologists a new, detailed look into the relationship between KRAS clustering and diffusion speeds.

McDonald, T.↗

Search for pair-production of vector-like quarks in pp collision events at s = 13 TeV with at least one leptonically decaying Z boson and a third-generation quark with the ATLAS detector

Herein a search for the pair-production of vector-like quarks optimized for decays into a Z boson and a third-generation Standard Model quark is presented, using the full Run 2 dataset corresponding to 139fb –1 of pp collisions at $\sqrt{s}$ = 13TeV, collected in 2015–2018 with the ATLAS detector at the Large Hadron Collider. The targeted final state is characterized by the presence of a Z boson with high transverse momentum, reconstructed from a pair of same-flavour leptons with opposite-sign charges, as well as by the presence of b-tagged jets and high-transverse-momentum large-radius jets reconstructed from calibrated smaller-radius jets. Events with exactly two or at least three leptons are used, which are further categorized by the presence of boosted W, Z, and Higgs bosons and top quarks. The categorization is performed using a neural-network-based boosted object tagger to enhance the sensitivity to signal relative to the background. No significant excess above the background expectation is observed and exclusion limits at 95% confidence level are set on the masses of the vector-like partners T and B of the top and bottom quarks, respectively. The limits depend on the branching ratio configurations and, in the case of 100% branching ratio for T→Zt and 100% branching ratio for B→Zb, this search sets the most stringent limits to date, allowing m T >1.60TeV and m B >1.42TeV, respectively.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Search for new phenomena in final states with large jet multiplicities and missing transverse momentum using $\sqrt{s}$ = 13 TeV proton-proton collisions recorded by ATLAS in Run 2 of the LHC

Results of a search for new particles decaying into eight or more jets and moderate missing transverse momentum are presented. The analysis uses 139 fb - 1 of proton-proton collision data at s = 13 TeV collected by the ATLAS experiment at the Large Hadron Collider between 2015 and 2018. The selection rejects events containing isolated electrons or muons, and makes requirements according to the number of b -tagged jets and the scalar sum of masses of large-radius jets. The search extends previous analyses both in using a larger dataset and by employing improved jet and missing transverse momentum reconstruction methods which more cleanly separate signal from background processes. No evidence for physics beyond the Standard Model is found. The results are interpreted in the context of supersymmetry-inspired simplified models, significantly extending the limits on the gluino mass in those models. In particular, limits on the gluino mass are set at 2 TeV when the lightest neutralino is nearly massless in a model assuming a two-step cascade decay via the lightest chargino and second-lightest neutralino.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Search for flavour-changing neutral-current couplings between the top quark and the photon with the ATLAS detector at s = 13 TeV

This letter documents a search for flavour-changing neutral currents (FCNCs), which are strongly suppressed in the Standard Model, in events with a photon and a top quark with the ATLAS detector. The analysis uses data collected in pp collisions at TeV during Run 2 of the LHC, corresponding to an integrated luminosity of 139 fb –1 . Both FCNC top-quark production and decay are considered. The final state consists of a charged lepton, missing transverse momentum, a b-tagged jet, one high-momentum photon and possibly additional jets. A multiclass deep neural network is used to classify events either as signal in one of the two categories, FCNC production or decay, or as background. No significant excess of events over the background prediction is observed and 95% CL upper limits are placed on the strength of left- and right-handed FCNC interactions. The 95% CL bounds on the branching fractions for the FCNC top-quark decays, estimated (expected) from both top-quark production and decay, are B(t → uγ) < 0.85 (0.88$^{+0.37}_{-0.25}$) × 10 –5 and B(t → cγ) < 4.2 (3.40$^{+1.35}_{-0.95}$) × 10 –5 for a left-handed tqγ coupling, and B(t → uγ) < 1.2 (1.20$^{+0.50}_{-1.33}$) ×10 –5 and B(t → cγ) < 4.5 (3.70$^{+1.47}_{-1.03}$) × 10 –5 for a right-handed coupling.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Tagged Short-Range Correlations for Medium to Heavy Ions at an Electron Ion Collider

Understanding short-range correlations between pairs of nucleons in the nucleus is an important nuclear physics topic that can address longstanding mysteries in nuclear physics such as the behavior of dense nuclear systems and the modification of parton distributions. As a collider and with a large acceptance detector, the Jefferson Lab version of the Electron Ion Collider has unique capabilities that are complementary to previous short-range correlation studies, most notably the ability to more fully reconstruct the final state. Optimization of the collider’s detector to maximally exploit these capabilities called for important extensions of existing simulation tools. For this one year laboratory directed research and development project, we upgraded the benchmark electron-nucleon event generator for lepto-production simulation code Benchmark eA Generator for LEptoproduction (BeAGLE) to be able to handle tagged medium-to-heavy nucleons. This included updating the code to correctly handle Fermi motion of nucleons in the nucleus as well as the large momentum caused by short-range correlations. In addition, we also investigated the possibility of improved kinematic reconstruction methods for electron nucleon collisions and looked at pair-spectator tagging of short-range correlations with the Jefferson Lab electron ion collider design. The project progressed very much as planned.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Physics prospects with MeV neutrino-argon charged current interactions using enhanced photon detection in future LArTPCs

Here, we investigate MeV-scale electron neutrino charged current interactions in a liquid argon time projection chamber (LArTPC) equipped with an enhanced photon detection system. Using simulations of deposited energy in charge and light calorimetry, we explore the potential for dual calorimetric neutrino energy reconstruction. We found energy reconstruction based on light-only calorimetry has a better resolution than combined charge and light calorimetry when hadrons are produced in these events. Meanwhile, enhanced light detection offers improved nanosecond timing resolution and broad optical coverage, enabling neutron tagging and identification of delayed low-energy gamma emissions. These advancements open new avenues in low-energy neutrino physics in next-generation LArTPCs.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

BONCAT-FACS-Seq reveals the active fraction of a biocrust community undergoing a wet-up event

Determining which microorganisms are active within soil communities remains a major technical endeavor in microbial ecology research. One promising method to accomplish this is coupling bioorthogonal non-canonical amino acid tagging (BONCAT) with fluorescence activated cell sorting (FACS) which sorts cells based on whether or not they are producing new proteins. Combined with shotgun metagenomic sequencing (Seq), we apply this method to profile the diversity and potential functional capabilities of both active and inactive microorganisms in a biocrust community after being resuscitated by a simulated rain event. We find that BONCAT-FACS-Seq is capable of discerning the pools of active and inactive microorganisms, especially within hours of applying the BONCAT probe. The active and inactive components of the biocrust community differed in species richness and composition at both 4 and 21 h after the wetting event. The active fraction of the biocrust community is marked by taxa commonly observed in other biocrust communities, many of which play important roles in species interactions and nutrient transformations. Among these, 11 families within the Firmicutes are enriched in the active fraction, supporting previous reports indicating that the Firmicutes are key early responders to biocrust wetting. We highlight the apparent inactivity of many Actinobacteria and Proteobacteria through 21 h after wetting, and note that members of the Chitinophagaceae, enriched in the active fraction, may play important ecological roles following wetting. Based on the enrichment of COGs in the active fraction, predation by phage and other bacterial members, as well as scavenging and recycling of labile nutrients, appear to be important ecological processes soon after wetting. To our knowledge, this is the first time BONCAT-FACS-Seq has been applied to biocrust samples, and therefore we discuss the potential advantages and shortcomings of coupling metagenomics to BONCAT to intact soil communities such as biocrust. In all, by pairing BONCAT-FACS and metagenomics, we are capable of highlighting the taxa and potential functions that typifies the microbes actively responding to a rain event.

59 BASIC BIOLOGICAL SCIENCES↗

Solar neutrino detection in liquid xenon detectors via charged-current scattering to excited states

We investigate the prospects for real-time detection of solar neutrinos via the charged-current neutrino-nucleus scattering process in liquid xenon time projection chambers. We use a nuclear shell model, benchmarked with experimental data, to calculate the cross sections for populating specific excited states of the cesium nuclei produced by neutrino capture on Xe 131 and Xe 136 . The shell model is further used to compute the decay schemes of the low-lying 1 + excited states of Cs 136 , for which there is sparse experimental data. We explore the possibility of tagging the characteristic deexcitation γ rays/conversion electrons using two techniques: spatial separation of their energy deposits using event topology and their time separation using delayed coincidence. The efficiencies in each case are evaluated within a range of realistic detector parameters. We find that the topological signatures are likely to be dominated by radon backgrounds, but that a delayed-coincidence signature from long-lived states predicted in Cs 136 may enable background-free detection of CNO neutrino interactions in next-generation experiments with smaller uncertainty than current measurements. We also estimate the sensitivity as a function of exposure for detecting the solar-temperature-induced line shift in Be 7 neutrino emission, which may provide a new test of solar models.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Search for pair-produced vector-like top and bottom partners in events with large missing transverse momentum in $pp$ collisions with the ATLAS detector

A search for pair-produced vector-like quarks using events with exactly one lepton ($e$ or $μ$), at least four jets including at least one $b$-tagged jet, and large missing transverse momentum is presented. Data from proton–proton collisions at a centre-of-mass energy of $\sqrt{s}$ = 13 TeV, recorded by the ATLAS detector at the LHC from 2015 to 2018 and corresponding to an integrated luminosity of 139 fb –1 , are analysed. Vector-like partners $T$ and $B$ of the top and bottom quarks are considered, as is a vector-like $X$ with charge +5/3, assuming their decay into a $W$, $Z$, or Higgs boson and a third-generation quark. No significant deviations from the Standard Model expectation are observed. Upper limits on the production cross-section of $T$ and $B$ quark pairs as a function of their mass are derived for various decay branching ratio scenarios. The strongest lower limits on the masses are 1.59 assuming mass-degenerate vector-like quarks and branching ratios corresponding to the weak-isospin doublet model, and 1.47 TeV (1.46 TeV) for exclusive $T$→$Zt$ ($B/X$→$Wt$) decays. In addition, lower limits on the $T$ and $B$ quark masses are derived for all possible branching ratios.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

XA21-mediated resistance to Xanthomonas oryzae pv. oryzae is dose dependent

The rice receptor kinase XA21 confers broad-spectrum resistance to Xanthomonas oryzae pv. oryzae ( Xoo ), the causal agent of rice bacterial blight disease. To investigate the relationship between the expression level of XA21 and resulting resistance, we generated independent HA-XA21 transgenic rice lines accumulating the XA21 immune receptor fused with an HA epitope tag. Whole-genome sequence analysis identified the T-DNA insertion sites in sixteen independent T0 events. Further, through quantification of the HA-XA21 protein and assessment of the resistance to Xoo strain PXO99 in six independent transgenic lines, we observed that XA21-mediated resistance is dose dependent. In contrast, based on the four agronomic traits quantified in these experiments, yield is unlikely to be affected by the expression level of HA-XA21 . These findings extend our knowledge of XA21-mediated defense and contribute to the growing number of well-defined genomic landing pads in the rice genome that can be targeted for gene insertion without compromising yield.

60 APPLIED LIFE SCIENCES↗

Search for physics beyond the standard model in top quark production with additional leptons in the context of effective field theory

A search for new physics in top quark production with additional final-state leptons is performed using data collected by the CMS experiment in proton-proton collisions at $ \sqrt{s} $ = 13 TeV at the LHC during 2016–2018. The data set corresponds to an integrated luminosity of 138 fb$^{−1}$. Using the framework of effective field theory (EFT), potential new physics effects are parametrized in terms of 26 dimension-six EFT operators. The impacts of EFT operators are incorporated through the event-level reweighting of Monte Carlo simulations, which allows for detector-level predictions. The events are divided into several categories based on lepton multiplicity, total lepton charge, jet multiplicity, and b-tagged jet multiplicity. Kinematic variables corresponding to the transverse momentum (p$_{T}$) of the leading pair of leptons and/or jets as well as the p$_{T}$ of on-shell Z bosons are used to extract the 95% confidence intervals of the 26 Wilson coefficients corresponding to these EFT operators. No significant deviation with respect to the standard model prediction is found.[graphic not available: see fulltext]

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Measurement of the polarisation of W bosons produced in top-quark decays using dilepton events at $\sqrt{s}$ = $13$ TeV with the ATLAS experiment

A measurement of the polarisation of W bosons produced in top-quark decays is presented, using proton–proton collision data at a centre-of-mass energy of $\sqrt{s}$ = $13$ TeV. The data were collected by the ATLAS detector at the Large Hadron Collider and correspond to an integrated luminosity of 139 fb -1 . The measurement is performed selecting $t$$\overline{t}$ events decaying into final states with two charged leptons (electrons or muons) and at least two b-tagged jets. The polarisation is extracted from the differential cross-section distribution of the cos$⁡θ$* variable, where $θ$* is the angle between the momentum direction of the charged lepton from the W boson decay and the reversed momentum direction of the b-quark from the top-quark decay, both calculated in the W boson rest frame. Parton-level results, corrected for the detector acceptance and resolution, are presented for the cos⁡θ* angle. The measured fractions of longitudinal, left- and right-handed polarisation states are found to be $f$ 0 = 0.684 ± 0.005 (stat.) ± 0.014 (syst.), $f$ L = 0.318 ± 0.003 (stat.) ± 0.008 (syst.) and $f$ R = -0.002 ± 0.002 (stat.) ± 0.014 (syst.), in agreement with the Standard Model prediction.

43 PARTICLE ACCELERATORS↗

ATLAS flavour-tagging algorithms for the LHC Run 2 $pp$ collision dataset

The flavour-tagging algorithms developed by the ATLAS Collaboration and used to analyse its dataset of $\sqrt{s}$ = 13 TeV $pp$ collisions from Run 2 of the Large Hadron Collider are presented. These new tagging algorithms are based on recurrent and deep neural networks, and their performance is evaluated in simulated collision events. These developments yield considerable improvements over previous jet-flavour identification strategies. At the 77% $b$-jet identification efficiency operating point, light-jet (charm-jet) rejection factors of 170 (5) are achieved in a sample of simulated Standard Model $t\bar{t}$ events; similarly, at a $c$-jet identification efficiency of 30%, a light-jet ($b$-jet) rejection factor of 70 (9) is obtained.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗