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At least 91 records · Page 5

Block Design with Common Reference Samples Enables Robust Large-Scale Label-Free Quantitative Proteome Profiling

Label-free quantitative proteomics has become an increasingly popular tool for profiling global protein abundances. However, one major weakness is the potential performance drift of the LC-MS platform over time, which in turn limits its utility for analyzing large-scale sample sets. To address this, in this work we introduce an experimental and data analysis scheme based on a block-design with common controls within each block for enabling LC-MS-based large-scale label-free quantification. In this scheme, a large number of samples (e.g., >100 samples) are analyzed in smaller, and more manageable blocks, minimizing instrument drift and variability within a block. Furthermore, each designated block also contains common controls (or reference) samples for normalization within and across blocks. We demonstrated the effectiveness of this method by profiling the proteome response of human macrophage THP-1 cells to 11 engineered nanomaterials (ENMs) at two different doses. A total of 116 samples were analyzed in six blocks, yielding an average coverage of 4500 proteins per sample. The data revealed consistent quantification of proteins across all six blocks, as shown by highly stable quantification of house-keeping proteins in all samples and high levels of quantification correlation among samples from different blocks. The data also demonstrated that label-free quantification is robust and accurate enough to quantify even very subtle abundance changes as well as large fold-changes without potential ratio compression as often encountered with isobaric labeling. Our streamlined workflow is easy to implement and can be readily adapted to other large cohort studies for reproducible label-free proteome quantification.

59 BASIC BIOLOGICAL SCIENCES↗

Metastable multimeric G-quadruplex 2′FY-RNA aptamers that selectively bind pyoverdines

Two 2′FY-RNA aptamers with distinct sequences were selected for specific binding to pyoverdine-Pf5 (PVD-Pf5), increasing chromophore fluorescence upon binding. They also recognized the peptide portion of pyoverdines, as shown by their differential specificity for related variants. Computational analysis and experimental data (NMM binding, CD spectra) identified G-quadruplex structures that were thermally metastable but reformed in the presence of PVD-Pf5. Further structural studies mainly with one aptamer revealed imino proton peaks in 1D H-NMR and pressure stability up to 2 kbar. Electrophoretic evidence identified dimeric G-quadruplexes formed by the 2′FY-RNA aptamers and their RNA equivalents. While cations were necessary for PVD-Pf5 binding, they were not required for G-quadruplex formation. Given the established role of G-quadruplexes as protein interaction sites, multimeric G-quadruplexes offer a potential framework for structure-based regulatory mechanisms in cellular RNAs. In addition to previously characterized multimeric G-quadruplexes, these aptamers contribute novel sequences that expand the repertoire of known multimeric G-quadruplexes.

2′FY-RNA↗

Reduced-order model to approximate response matrices for filter stack spectrometers

We present a reduced-order model to calculate response matrices rapidly for filter stack spectrometers (FSSs). The reduced-order model allows response matrices to be built modularly from a set of pre-computed photon and electron transport and scattering calculations through various filter and detector materials. While these modular response matrices are not appropriate for high-fidelity analysis of experimental data, they encode sufficient physics to be used as a forward model in design optimization studies of FSSs, particularly for machine learning approaches that require sampling and testing a large number of FSS designs.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Specific features of fluorescence transfer in multiply scattering randomly inhomogeneous layers under intense laser pumping

Based on the analysis of experimental data on the effect of the pulsed laser pump intensity on the spectral properties and the size of the fluorescent response zone in randomly inhomogeneous fluorescent layers, we found that the amplification of spontaneous and stimulated emission significantly affects the statistical properties of the propagation lengths of the fluorescent field partial components in the layers. The experiments are performed with layers of SiO{sub 2} and TiO{sub 2} nanoparticles saturated with rhodamine 6G, pumped by 532-nm laser radiation in the intensity range corresponding to the transient regime from excitation of spontaneous fluorescence to random lasing in the layer. The experimental data are compared with the results of statistical modelling of fluorescence transfer. It is shown that, even at a pump intensity below the random lasing threshold, the spontaneous emission amplification in a layer leads to a significant increase in the contributions to the fluorescence response from partial components with propagation lengths much larger than the layer thickness. This can be interpreted as a manifestation of the quasi-waveguide effect, in which the probability of propagation of diffuse fluorescence components along the layer over distances many times greater than its thickness and the size of the pumped region increases significantly with a decrease in the characteristic radiation amplification length in the layer. (paper)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Pressure Drop in Seven-Pin Wire-Wrapped Rod Bundle for the Sodium Cartridge Loop in Versatile Test Reactor

This work studies the hydrodynamics of the seven pin wire-wrapped rod bundle in the sodium cartridge loop for the Versatile Test Reactor (VTR) through scaled water experiments and computational fluid dynamics (CFD) simulations. Here, the scaling analysis is first performed to demonstrate the hydrodynamic similarity between water and sodium flows at the same Reynolds number Re. A separate-effects test facility is designed and constructed based on the scaling analysis. Detailed experimental data on the pressure drop covering a wide range of Re values (1165 to 27 689) are obtained, which are used to evaluate existing correlations for friction factor and to benchmark CFD simulations. The experimentally determined friction factors f Exp agree well with the Upgraded Cheng and Todreas Detailed Correlation and Pacio-Chen-Todreas Detailed Model within ±7% but are significantly underpredicted by Rehme's correlation by 25%. Various CFD near-wall treatment methods are tested using ANSYS Fluent and evaluated by experimental data. It is found that when the recommended wall y + values are met, most of the near-wall treatment methods can give accurate friction factor predictions. The resolved near-wall method (y + ~ 1) with the Shear Stress Transport k - ω turbulence model and the scalable wall functions (y + > 12) with the realizable k - ε turbulence model can predict f Exp within ±5% The standard wall functions (y + > 30) and nonequilibrium wall functions (y + > 30) with the realizable k - ε model can predict f Exp within ±10%.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Landau-Ginzburg theory of charge density wave formation accompanying lattice and electronic long-range ordering

Here we propose an analytical Landau-Ginzburg (LG) theory of the charge density waves coupled with lattice and electronic long-range order parameters. Examples of long-range order include the electronic wave function of superconducting Cooper pairs, structural distortions, electric polarization, and magnetization. We formulate the LG free energy density as a power expansion with respect to the charge density and other long-range order parameters as well as their spatial gradients and biquadratic coupling terms. We introduced a biquadratic coupling between the charge density gradient and long-range order parameters as well as nonlinear higher gradients of the long-range order parameters. The biquadratic gradient coupling is critical to the appearance of different spatially modulated phases in charge-ordered ferroics and high-temperature superconductors. We derived the thermodynamic conditions for the stability of the spatially modulated phases, which are the intertwined spatial waves of charge density and lattice/electronic long-range order. The analytical expressions for the energies of different phases, corresponding order parameters, charge density waves amplitudes, and modulation periods obtained in this paper can be employed to guide the comprehensive physical explanation, deconvolution, and Bayesian analysis of experimental data on quantum materials ranging from charge-ordered ferroics to high-temperature superconductors.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Generation of Fragment Angular Momentum in Fission

A recent analysis of experimental data [J. Wilson et al., Nature (London) 590, 566 (2021)] found that the angular momenta of nuclear fission fragments are uncorrelated. Based on this finding, the authors concluded that the spins are therefore determined only after scission has occurred. We show here that the nucleon-exchange mechanism, as implemented in the well-established event-by-event fission model freya, while agitating collective rotational modes in which the two spins are highly correlated, nevertheless leads to fragment spins that are largely uncorrelated. We find that this counterexample invalidates the conclusion in [J. Wilson et al.] that uncorrelated spins must necessarily have been generated after scission (a potentious conclusion that would rule out all models that generate the fragment spins prior to scission). Furthermore, it was reported [J. Wilson et al.] that the mass dependence of the average fragment spin has a sawtooth structure. We demonstrate that such a behavior naturally emerges when shell and deformation effects are included in the moments of inertia of the fragments at scission.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

EpIC: novel Monte Carlo generator for exclusive processes

Abstract We present the EpIC Monte Carlo event generator for exclusive processes based on generalised parton distributions. EpIC utilises the PARTONS framework, which provides a flexible software architecture and a variety of modelling options for the partonic description of the nucleon. The generator offers a comprehensive set of features, including simulation of a variety of exclusive processes and radiative corrections. It may be used both in the analysis of experimental data, as well as for impact studies, especially for the future electron-ion colliders.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Explore the Potential to Formulate Feedstock Blends from Diverse Biomass inputs for Improved Processing Performance at Lower Costs

This work aims to understand the pelleting characteristics of 2-inch top-pine residue blended with switchgrass at high moisture content. The process variables tested are blend moisture content, length-to-diameter (L/D) ratio in the pellet die, and the blend ratio. A flat-die pellet mill was also used in this study. The pine and switchgrass blend ratios that were tested include (1) 25% 2-inch top pine residue with 75% switchgrass; (2) 50% 2-inch top pine residue with 50% switchgrass; and (3) 75% 2-inch top pine residue with 25% switchgrass. The pelleting process conditions tested included the L/D ratio in the pellet die (i.e., 1.5 to 2.6) and the blend moisture content (20 to 30%, w.b.). Analysis of experimental data indicated that blending 25% switchgrass with 75% 2-inch top pine residue and 50% switchgrass with 50% 2-inch top pine residue resulted in pellets with a bulk density of >550 kg/m3 and durability of >95. Optimization of the response surface models developed for process conditions in terms of product properties indicated that a higher L/D ratio of 2.6 and a lower blend-moisture content of 20% (w.b.) maximized bulk density and durability. Higher pine in the blends improved the pellet durability and reduced energy consumption. Tests were also conducted on blends of pine and switchgrass using a pilot scale pellet mill by varying the blend moisture content and compression ratio of the pellet die. Pelleting tests on pure pine and switchgrass and their blends in a pilot scale ring die pellet mill with a throughput of 1 ton/h has indicated pellets with durability >500 kg/m3 and durability in the range of >90 and >95 %. The demonstration of high moisture pelleting of blends of 2- and 6-inch top pine residues and switchgrass blends indicated that good quality pellets with durability >90 % and bulk density of >500 kg/m3 can be produced.

09 BIOMASS FUELS↗

SULI Research Report Paper

Hybrid-CMOS (hCMOS) nanosecond x-ray imagers are a powerful timeresolved HED (high-energy-density) diagnostic due to their sensitivity to visible light, x-rays, and charged particles. However, significant pseudosinusoidal background oscillations have been observed in these sensors when exposed to an early incident excitation, a phenomenon that has been experimentally linked the sensor’s bond wire inductance. We analyze the oscillations both in the time domain and spatially to account for variations on the pixel level. Both theoretical techniques and analysis of experimental data have shown that the oscillations are a global sensor phenomenon. In addition, we effectively describe the oscillations with a physics-based model, giving further insight into the processes affecting them. This technique allows the hCMOS user to subtract out the oscillations from their measurements and improve accuracy.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Understanding the field and frequency dependence of rf loss in SRF cavities

SRF cavities subjected to heat treatment below 200 °C in the presence of nitrogen showed an improvement in quality factor while maintaining an accelerating gradient above 25 MV/m. Here, we report the rf performance of several single-cell superconducting radio frequency cavities with frequency ranging from 0.75 - 3.0 GHz subjected to low temperature heat treatment in nitrogen environment. The cavities were treated at temperature 120 - 175 oC for 24 - 48 hours in low partial pressure of ultra-pure nitrogen gas. The improvement in Q? with Q-rise was observed when nitrogen gas was injected ~300 °C during the furnace treatment. The surface modification was confirmed by the change in electronic mean free path and near surface elemental analysis by SIMS. The field dependence of the rf losses is strongly correlated to the cavity frequency. The analysis of experimental data with available theoretical models as well as comparison with similar study on high temperature nitrogen doped cavities will be presented.

Ciovati, Gianluigi↗

Development of Microwave Resonant Cavity Transducer Recalibration Procedures

We are investigating a microwave resonant cavity transducer for flow sensing in the vessel of a high temperature fluid advanced reactor (AR), such as a molten salt cooled reactor (MSCR) or a sodium fast reactor (SFR). This transducer is a hollow metallic cylindrical cavity, with one of the flat walls of the cylinder flexible enough to undergo microscopic deflection due to dynamic fluid pressure. Membrane deflection leads to a shift in the microwave resonant frequency, which can be detected with a spectrum analyzer. We have performed a preliminary proof-of-principle test of flow sensing in high temperature liquid sodium in environment. The liquid sodium setup consists of a cylindrical vessel with a center feed line, where a transducer inserted through the top cap of the vessel measures velocity of the impinging liquid jet. For this test, we have developed a cylindrical resonator, which was machined from stainless steel 316 and electroplated with silver on the interior surfaces. Inner diameter of the cylindrical cavity is 22.2 mm, and the thin wall is approximately 200µm thick. The cavity was excited through a WR-42 waveguide through a subwavelength hole on the side of the wall of the cylinder in the TE 011 mode with resonant frequency f ≈ 17.8GHz. Sodium flow rate sensing study was performed in a liquid sodium vessel at 340°C temperature and ambient pressure. The flow rate was changed by varying sodium pump power, and a frequency shift of several hundred KHz was observed. From the measurements, we observed significant scatter in high temperature liquid sodium at low flow velocity values. Our hypothesis is that this is caused by temperature drift in the liquid, which results in thermal expansion of the cavity and a drift in the resonator frequency. In this report, we investigate temperature dependence of the resonant frequency through development of analytic models and preliminary analysis of experimental data. In addition, we develop a procedure for compensation for temperature drift during flow sensing.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Large-x partons from Jefferson Lab to the LHC

This project addressed the longitudinal quark and gluon structure of hadrons, a key topic in the 2015 and 2023 NSAC long range plans for nuclear science. The research encompassed and combined theoretical studies with advanced Quantum Chromo Dynamics (QCD) analysis of experimental data, from Jefferson Lab to the Large Hadron Collider. The results have pushed the boundaries in both aspects, and capitalized on the results and methods developed in previous grant renewals.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

p +p - electroproduction off protons in deuterium: measurements of quasi-free cross sections and kinematic probing of final state interactions

In this study, the process of pi+pi- electroproduction off protons bound in deuterium nuclei is explored. The exploration is performed through the analysis of experimental data on electron scattering off the deuteron target, collected in Hall B at Jefferson Lab with the CLAS detector. As a main result, the set of integrated and single-differential cross sections of the reaction yvp(n) -> p'(n')pi+pi- is obtained. The cross sections are extracted in the quasi-free regime, which implies that only events not affected by final state interactions are subject to selection. The measurements are performed in the kinematic region of the invariant mass W from 1.3 GeV to 1.825 GeV and photon virtuality Q2 from 0.4 GeV2 to 1 GeV2. Sufficient experimental statistics allows narrow binning, i.e. 25 MeV in W and 0.05 GeV2 in Q2, while maintaining an adequate statistical uncertainty. The extraction of quasi-free cross sections is accompanied by the kinematic probing of FSI between the reaction final hadrons and the spectator neutron in the aforementioned exclusive channel. In this probing the distributions of missing quantities are used in order to investigate the relative spread of events with FSI along the reaction phase space, trace the difference of FSI manifestations in different reaction topologies, reveal details on alterations of the hadron momentum in FSI, and isolate FSI contributions of various final hadrons. The performed examination is also capable of retrieving information on some underlying FSI mechanisms, among which the process of resonance formation in the intermediate state of pion-neutron interactions is particularly remarkable.

Skorodumina, Iuliia↗

Integrated Heat Exchanger-Phase Change Material Thermal Energy Storage System

The purpose of this study is to experimentally investigate the thermal performance of an innovative thermal energy storage (TES) system that combines the advantages of the phase-change material (PCM)/graphite foam latent heat TES medium developed at Argonne National Laboratory (Argonne) and the internally supported plate-fin (ISPE) cell architecture heat transfer fluid (HTF) flow channels developed at Brayton Energy (Brayton). Several essential tasks were accomplished: (1) Thermal property characterization. Thermal properties of the graphite foam were characterized, providing necessary data for experimental result analysis and numerical simulation. (2) Design and optimization of lab-scale test module. Based on Brayton’s full-scale heat exchanger (HX)-TES system, the experimental test module was designed, optimized, and fabricated. (3) Thermal performance testing and data analysis. Five cycle tests were successfully conducted—including one with approximately 3.5 psig of pressure applied to the diaphragms—to investigate the thermal performance of the experimental test module for charging and discharging. Temperature profiles were generated for each charging test and discharging test as a function of time. The temperature profiles clearly show three TES stages: sensible heat (temperature increase), latent heat (melting), and sensible heat (temperature increase) for the charging process. Similarly, the temperature profiles clearly show three thermal energy release stages: sensible heat (temperature decrease), latent heat (solidification), and sensible heat (temperature decrease). Melting and solidification of the PCM generally occurred in relatively narrow temperature ranges, indicated by the flattened temperature regions in the temperature profiles. These phase changes ranged approximately 3°C for melting and 3.5°C for solidification. The charging and discharging temperature profiles were similar for similar experimental parameter tests whether or not pressure was applied to the diaphragm to eliminate the gap between the HX surface and the TES subsystem. This indicates that the effect of a small gap between the HX surface and the TES subsystem is insignificant for charging and discharging. (4) Comparison of experimental data and simulation results. We compared the experimental data to the numerical simulation results. Numerical simulations were conducted by using the ANSYS FLUENT 2019 R3 commercial computational fluid dynamics software. The predicted phase-change times agreed reasonably well with those from the experimental data. In most cases, the estimated time differences between the relative phase changes were within 16%. The predicted start and end times for the charging process agreed well with those from the experimental data. However, the simulation results showed earlier start and end times than the experimental data for the discharging process. Overall, the experimental data and its comparison with the simulation predictions verified the technical viability of the integrated ISPF HX-PCM/graphite foam latent-heat TES system.

25 ENERGY STORAGE↗

Plasma-assisted catalysis for ammonia synthesis in a dielectric barrier discharge reactor: key surface reaction steps and potential causes of low energy yield

Ammonia synthesis experiments were carried out in a coaxial dielectric barrier discharge (DBD) reactor packed with several different supports and metal catalysts. There was a marked increase in the reaction rate, over that obtained in an empty DBD plasma reactor, upon introduction of a packed bed of γ-Al 2 O 3 , Ru/γ-Al 2 O 3 , or SiO 2 particles. The difference in the reaction rates over γ-Al 2 O 3 and Ru/γ-Al 2 O 3 was minimal. Complementary zero-dimensional plasma kinetic model analysis was also performed using inputs from experimental data. This kinetic analysis allowed for gas phase reactions, Eley–Rideal (E–R) reactions, and direct adsorption of radical species on the γ-Al 2 O 3 surface. On the metal surface, dissociative adsorption of N 2 and H 2 , and Langmuir–Hinshelwood reactions were also included. This analysis revealed that, under the conditions of our experiments, ammonia synthesis proceeds principally by the formation of reactive radicals in the gas phase, which then adsorb and participate in E–R reactions on both the metal and support material surfaces. Furthermore, this finding illustrates a challenge for substantially increasing the energy yield for plasma-assisted ammonia synthesis in typical DBD reactors containing packed catalyst beads.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Code validation of SAM using natural-circulation experimental data from the compact integral effects test (CIET) facility

The primary objective of this study is to validate the system analysis code, SAM, using experimental data from the Compact Integral Effects Test (CIET) experimental loop. SAM is a modern system analysis code being developed at Argonne National Laboratory for safety analysis of designs for advanced non-light water reactors (non-LWRs), such as sodium-cooled fast reactors, high-temperature gas-cooled reactors, and fluoride salt-cooled high-temperature reactors (FHRs). To support SAM code development for the wide range of non-LWR applications, it is of paramount importance to validate the code against experiments highly relevant to these reactor concepts. Additionally, the CIET facility, which was designed to reproduce the thermal-hydraulics response of FHRs under both forced- and natural-circulation conditions, has been identified and selected as one of the benchmark test facilities for SAM code validation. In this study, two sets of available CIET tests were selected for SAM code validation purposes, namely, power step change transient tests and steady-state natural-circulation tests. For all selected tests, SAM-predicted results show very good agreement with experimental data. The successful validation of SAM against these selected CIET experiments demonstrates that the computer code is well suited for thermal-hydraulics analysis of FHR designs.

42 ENGINEERING↗