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We present a collection of 30 Escherichia coli cultures (Clone-FISH cultures), each carrying a plasmid for the heterologous expression of a (near) full-length 16S rRNA gene from 1 of 30 lineages of archaea, including 17 yet uncultured ones. We make these clones available for use as controls in fluorescence in situ hybridization experiments.
For the past several years, the National Renewable Energy Laboratory (NREL), Sandia National Laboratories (SNL), and Pacific Northwest National Laboratory (PNNL) have provided technical assistance to the recipients of Department of Energy (DOE) -funded voucher programs, namely American-Made Challenges (AMC), the Incubator Program, and the Small Business Vouchers Program. Drawing on lessons learned and from first-hand experiences, NREL is leading a new holistic and streamlined voucher program aimed at strengthening ties between American innovators and the national labs. This new program, “Vouchers to Enable Laboratory and Organizational Collaboration for Innovation and Technology Improvements,” or VELOCITI, will leverage the successful elements of past programs, create administrative efficiencies, and enable the buildout of a national program to drive strong relationships between entrepreneurs and the national labs to accelerate the roll-out of new technologies in the US solar sector. This work will evaluate Hawaii Fish Company’s (HFC’s) floating renewable energy-powered aeration systems, designed primarily for aquaculture ponds, with crossover applications to farm ponds, reservoirs, and other water bodies. Notably, HFC’s systems include a variety of configurations, such as direct-solar systems, battery-storage systems, and systems with a secondary wind turbine option. HFC is planning to refine and commercialize their renewable energy aeration platforms. Presently, HFC is fabricating multiple configurations of the systems for deployment in multiple locations in the U.S. PNNL will apply technical expertise to assist in these goals, benefitting the industry partner by giving them an understanding of the performance of their systems. The technical objectives of this project are to understand system performance and reliability, determine a path toward certification, and model the performance of the systems in different locations.
This slide deck demonstrates how REopt can be used with a real-life example, the Lac du Flambeau fish hatchery in Lac du Flambeau, Wisconsin. It serves as a guide for Tribal staff who want to use the REopt platform to model a project.
Understanding the biogeography and timing of microbial metabolic activity is a key priority for microbial ecologists. With such knowledge, the cumulative biogeochemical contributions of microbial communities become more predictable, and our ability to both understand the effects of environmental change on microbial activity and build synthetic communities with desired functions will increase substantially. In this project, we advanced this broad, ambitious goal in two substantial ways: we developed a multiplexed Fluorescence In Situ Hybridization (FISH) approach that links microbial identity with metabolic function, and we established a novel Bio-Orthogonal Non-Canonical Amino acid Tagging (BONCAT) technique that can resolve the timing of anabolic activity, providing new resolution of when microbial constituents are growing. We deployed both of these techniques in multiple environmental settings to demonstrate their versatility. At the Little Sippewissett Salt Marsh, we combined a novel dual-BONCAT technique with fluorescence activated cell sorting to determine which population of cells was metabolically active during the day and which was active during the night. We found that Methylobacterium was active during daylight hours, potentially feeding on carbon-rich molecules released from plant roots. Sulfur-cycling microbes dominate the population active during the dark night-time hours. Overall, the work conducted under the auspices of this project developed two promising new techniques for identifying the “hot spots” and “hot moments” of microbial activity in complex communities with taxonomic and functional resolution. We focused largely on a salt marsh sediment context, but are confident that microbial ecologists seeking to understand the microbial role in biogeochemical cycles in a wide range of settings will find our newly developed techniques useful in future work.
Chemical analysis of molecular structure and chemical composition of fish otoliths
Fish oil and mineral oil slicks on sea water can be discriminated by their different spreading characteristics and by their reflectivities and color variations over a range of wavelengths. Reflectivities of oil and oil films are determined using a duel beam reflectance apparatus.
Linear acceleration effects on semicircular canals in elasmobranch fishes
The use of visual orientation, in the absence of landmarks, for underwater direction finding exercises by fishes is reviewed. Celestial directional clues observed directly near the water surface or indirectly at an asymptatic depth are suggested as possible orientation aids.
Self-powered sonar device may be implanted in body of fish. It transmits signal that can be detected with portable tracking gear or by automatic detection-and-tracking system. Operating life of over 4000 hours may be expected. Device itself may be used almost indefinitely.
The author has identified the following significant results. Seven major counties were examined: Escambia, Bay, Gulf, Franklin, Wakulla, Nassau, and Duval. Population and economic activity were reviewed, along with commercial fishing and port facilities. Recommendations for five northwest Florida counties were based on interpretation of aerial photographs, satellite imagery, an aerial survey site visit, and published data. Major needs in Pensacola included docking, ice supply, and net and engine repair services. Costs for additional docks, an ice plant, and gear storage were estimated at $3,658,600. Port users in Panama City identified additional docking and gear storage as primary needs, along with gear repair and a marine railway. Estimated costs for dock and gear storage were $2,860,000. Added docking, gear storage, and ice supply, as well as gear electronics and diesel repair were needed in Port St. Joe. Costs were calculated at $1,231,500. Franklin County has three ports (Apalachicola - $1,107,000 for docks and gear storage, Eastpoint - $420,000 for additional docks, and Carrabella - $2,824,100 for docks, gear storage, and ice plant).
The objective of the investigation was to develop a commercial remote sensing system for providing near-real-time data (within one day) in support of commercial fishing operations. The Airborne Ocean Color Imager (AOCI) had been built for NASA by Daedalus Enterprises, Inc., but it needed certain improvements, data processing software, and a delivery system to make it into a commercial system for fisheries. Two products were developed to support this effort: the AOCI with its associated processing system and an information service for both commercial and recreational fisheries to be created by Spectro Scan, Inc. The investigation achieved all technical objectives: improving the AOCI, creating software for atmospheric correction and bio-optical output products, georeferencing the output products, and creating a delivery system to get those products into the hands of commercial and recreational fishermen in near-real-time. The first set of business objectives involved Daedalus Enterprises and also were achieved: they have an improved AOCI and new data processing software with a set of example data products for fisheries applications to show their customers. Daedalus' marketing activities showed the need for simplification of the product for fisheries, but they successfully marketed the current version to an Italian consortium. The second set of business objectives tasked Spectro Scan to provide an information service and they could not be achieved because Spectro Scan was unable to obtain necessary venture capital to start up operations.
A body of literature suggests that the Mauthner cell startle response can be elicited by stimulation of the ear. While we know that there are projections to the M-cell from the ear, the specific endorgan(s) of the ear projecting to the M-cell are not known. Moreover, there are many reasons to question whether there is one pattern of inner ear to M-cell connection or whether the endorgan(s) projection to the M-cell varies in species that have different hearing capabilities of hearing structures. In this paper, we briefly review the structure of fish ears, with an emphasis on structural regionalization within the ear. We also review the central projections of the ear, along with a discussion of the limited data on projections to the M-cell.
Follow-up measurements of chromosome aberrations in the blood lymphocytes of astronauts were performed by FISH chromosome painting at various intervals from 5 months to more than 5 years after space flight and compared to preflight baseline measurements. For five of the six astronauts studied, the analysis of individual time courses for translocations revealed a temporal decline of yields with half-lives ranging from 10 to 58 months. The yield of exchanges remained unchanged for the sixth astronaut during an observation period of 5 months after flight. These results may indicate complications with the use of stable aberrations for retrospective dose reconstruction, and the differences in the decay time may reflect individual variability in risk from space radiation exposure.
The persistent monitoring capability provided by acoustic telemetry systems allows us to study behavior, movement, and resource selection of mobile marine animals. Current marine acoustic telemetry systems are challenged by localization errors and limits in the number of animals that can be tracked simultaneously. We designed a new system to provide detection ranges of up to 1 km, to reduce localization errors to less than 1 m, and to increase to 500 the number of unique tags simultaneously tracked. The design builds on HTIs experience of more than a decade developing acoustic telemetry systems for freshwater environments. A field trial of the prototype system was conducted at the University of Washingtons Friday Harbor Marine Laboratory (Friday Harbor, WA). Copper rockfish (Sebastes caurinus) were selected for field trials of this new system because their high site-fidelity and small home ranges provide ample opportunity to track individual fish behavior while testing our ability to characterize the movements of a species of interest to management authorities.
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Mammalian porcine thyrocalcitonin extract effect on concentrations of serum calcium and phosphate in catfish
A method is described for accurately calibrating cameras including radial lens distortion, by using points such as those measured from a calibration fixture.