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Towards mapping biodiversity from above: Can fusing lidar and hyperspectral remote sensing predict taxonomic, functional, and phylogenetic tree diversity in temperate forests?
Abstract Aim Rapid global change is impacting the diversity of tree species and essential ecosystem functions and services of forests. It is therefore critical to understand and predict how the diversity of tree species is spatially distributed within and among forest biomes. Satellite remote sensing platforms have been used for decades to map forest structure and function but are limited in their capacity to monitor change by their relatively coarse spatial resolution and the complexity of scales at which different dimensions of biodiversity are observed in the field. Recently, airborne remote sensing platforms making use of passive high spectral resolution (i.e., hyperspectral) and active lidar data have been operationalized, providing an opportunity to disentangle how biodiversity patterns vary across space and time from field observations to larger scales. Most studies to date have focused on single sites and/or one sensor type; here we ask how multiple sensor types from the National Ecological Observatory Network’s Airborne Observation Platform (NEON AOP) perform across multiple sites in a single biome at the NEON field plot scale (i.e., 40 m × 40 m). Location Eastern USA. Time period 2017–2018. Taxa studied Trees. Methods With a fusion of hyperspectral and lidar data from the NEON AOP, we assess the ability of high resolution remotely sensed metrics to measure biodiversity variation across eastern US temperate forests. We examine how taxonomic, functional, and phylogenetic measures of alpha diversity vary spatially and assess to what degree remotely sensed metrics correlate with in situ biodiversity metrics. Results Models using estimates of forest function, canopy structure, and topographic diversity performed better than models containing each category alone. Our results show that canopy structural diversity, and not just spectral reflectance, is critical to predicting biodiversity. Main conclusions We found that an approach that jointly leverages spectral properties related to leaf and canopy functional traits and forest health, lidar derived estimates of forest structure, fine‐resolution topographic diversity, and careful consideration of biogeographical differences within and among biomes is needed to accurately map biodiversity variation from above.
Seeing the forest for all the trees: Mycorrhizal‐associated nutrient economies are modulated by stem density and the synchrony between overstorey and understorey communities
1. Identifying relationships between plant communities and soil characteristics is a critical step in understanding the consequences of species gains and losses in ecosystems. The mycorrhizal associated nutrient economy (MANE) hypothesis predicts that the degree to which tree species and their mycorrhizal associates affect soil properties is driven by the relative dominance of different mycorrhizal types (often measured by relative basal area). While this approach emphasizes the importance of canopy trees, it does not account for how other factors (e.g. the density and composition of understorey trees) may alter tree–soil relationships. 2. We analysed tree–soil data from an eastern deciduous forest in southern Indiana, USA that contains >29,000 georeferenced stems, including 21 species that associate with arbuscular mycorrhizal (AM) fungi and 14 that associate with ectomycorrhizal (ECM) fungi. We sampled soils (upper 5 cm) from across the plot and modelled soil characteristics to tree communities. Given differences in soil characteristics among AM-dominated and ECM-dominated neighbourhoods, we hypothesized that relationships between tree-mycorrhizal dominance and soils would be affected by both the density of stems in the plot (owing to ‘Zinke’ individual plant effects) and composition of the understorey trees (owing to ‘trait divergence effects’) 3. In support of our Zinke hypothesis, we found that the relationships between tree-mycorrhizal dominance and soil variables (soil pH, nitrification rates and carbon to nitrogen ratio) were strengthened as stand density increased. In support of the trait divergence hypothesis, we found that as the mismatch between overstorey and understorey composition increased (e.g. AM-dominated understories beneath ECM-dominated overstories and vice versa), the relationship between tree dominance and soil variables weakened. We were able to use these insights to create mycorrhizal metrics to predict soil variables that were sensitive to the structural composition of neighbourhoods. 4. Synthesis. Our results indicate that relationships between plants and soils in forests are not only shaped by dominant overstorey trees but also the density and composition of understorey trees. Thus, efforts to predict the ecosystem consequences of species gains and losses may benefit from considering these elements of forest structure and not only the basal area of the dominant trees.
Cherokee Water Resources: Mapping Forest Health and Hemlock Tree Composition Using NASA Earth Observations to Enhance Drought and Watershed Health-Related Forest Management for the Eastern Band of the Cherokee Indians
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Converging Climate Sensitivities of European Forests Between Observed Radial Tree Growth and Vegetation Models
The impacts of climate variability and trends on European forests are unevenly distributed across different bioclimatic zones and species. Extreme climate events are also becoming more frequent and it is unknown how they will affect feed backs of CO2 between forest ecosystems and the atmosphere. An improved understanding of species differences at the regional scale of the response of forest productivity to climate variation and extremes is thus important for forecasting forest dynamics. In this study, we evaluate the climate sensitivity of above ground net primary production (NPP) simulated by two dynamic global vegetation models (DGVM; ORCHIDEE and LPJ-wsl) against tree ring width (TRW) observations from about1000 sites distributed across Europe. In both the model simulations and the TRW observations, forests in northern Europe and the Alps respond positively to warmer spring and summer temperature, and their overall temperature sensitivity is larger than that of the soil-moisture-limited forests in central Europe and Mediterranean regions. Compared with TRW observations, simulated NPP from ORCHIDEE and LPJ-wsl appear to be overly sensitive to climatic factors. Our results indicate that the models lack biological processes that control time lags, such as carbohydrate storage and remobilization, that delay the effects of radial growth dynamics to climate. Our study highlights the need for re-evaluating the physiological controls on the climate sensitivity of NPP simulated by DGVMs. In particular, DGVMs could be further enhanced by a more detailed representation of carbon reserves and allocation that control year-to year variation in plant growth.
Soil biogeochemical properties and metrics of tree-mycorrhizal dominance for a 25-Ha forest in South Central Indiana, USA.
This data package contains a dataset used in the papers “Seeing the forest for all the trees: Mycorrhizal-associated nutrient economies are modulated by stem density and the synchrony between overstory and understory communities” and “Mycorrhizal associations of tree species influence soil nitrogen dynamics via effects on soil acid–base chemistry”. Four csv files are included along with a dataset. The dataset features chemical soil properties for a single sampling campaign within the 25 Ha Lilly-Dickey Woods Smithsonian Forest Global Earth Observatory (ForestGEO) plot in South Central Indiana, USA (ldw_dat_raw.csv). Also included are separate files focused on pH (pH_data.csv), carbon and nitrogen (CN_data.csv), and nitrification rates (Nitrification_data.csv). These variables are commonly associated with the tree-mycorrhizal dominance of forest stands. In these data subsets, each soil variable was matched to a 10 meter radius neighborhood wherein metrics of tree-mycorrhizal dominance (basal area, stem count, importance value, etc.) were calculated. Models between these soil variables and dominance metrics were used to investigate how different assessments of mycorrhizal associated nutrient economies (MANE) capture these relationships. This research was performed as a part of the Smithsonian ForestGEO project. This data package can be used to explore spatial variability in soil chemistry within a mature hardwood forest, or it can be combined with the included tree data, other fine-scale spatial information, or other tree inventory data for the site to evaluate how soil chemistry varies with tree community composition or edaphic or topographic properties.
Large Trees Dominate Carbon Storage in Forests East of the Cascade Crest in the United States Pacific Northwest
Large-diameter trees store disproportionally massive amounts of carbon and are a major driver of carbon cycle dynamics in forests worldwide. In the temperate forests of the western United States, proposed changes to Forest Plans would significantly weaken protections for a large portion of trees greater than 53 cm (21 inches) in diameter (herein referred to as “large-diameter trees”) across 11.5 million acres (~4.7 million ha) of National Forest lands. This study is among the first to report how carbon storage in large trees and forest ecosystems would be affected by a proposed policy. We examined the proportion of large-diameter trees on National Forest lands east of the Cascade Mountains crest in Oregon and Washington, their contribution to overall aboveground carbon (AGC) storage, and the potential reduction in carbon stocks resulting from widespread harvest. We analyzed forest inventory data collected on 3,335 plots and found that large trees play a major role in the accumulated carbon stock of these forests. Tree AGC (kg) increases sharply with tree diameter at breast height (DBH; cm) among five dominant tree species. Large trees accounted for 2.0 to 3.7% of all stems (DBH ≥ 1” or 2.54 cm) among five tree species; but held 33 to 46% of the total AGC stored by each species. Pooled across the five dominant species, large trees accounted for 3% of the 636,520 trees occurring on the inventory plots but stored 42% of the total AGC. A recently proposed large-scale vegetation management project that involved widespread harvest of large trees, mostly grand fir, would have removed ~44% of the AGC stored in these large-diameter trees, and released a large amount of carbon dioxide to the atmosphere. Given the urgency of keeping additional carbon out of the atmosphere and continuing carbon accumulation from the atmosphere to protect the climate system, it would be prudent to continue protecting ecosystems with large trees for their carbon stores, and also for their co-benefits of habitat for biodiversity, resilience to drought and fire, and microclimate buffering under future climate extremes.
Fire, insect and disease‐caused tree mortalities increased in forests of greater structural diversity during drought
Abstract Structural diversity is an emerging dimension of biodiversity that accounts for size variations in organs among individuals in a community. Previous studies show significant effects of structural diversity on forest growth, but its effects on forest mortality are not known, particularly at a large scale. To address this knowledge gap, we quantified structural diversity using stem structural diversity (SSD) based on both tree diameter and height. We obtained U.S. Forest Service Forest Inventory and Analysis (FIA) data from over 2400 plots across southcentral U.S. forests that have suffered a recent drought. Using data from multiple sampling times, we calculated SSD and compared the relative importance of SSD, species diversity, functional diversity and other stand attributes in determining tree mortalities caused by fire, insects and diseases. We also used FIRETEC, a physics‐based fire model, to test the effect of SSD on canopy consumption by fire. Our results showed that (1) SSD was positively associated with tree mortalities caused by all three disturbances; (2) species richness was negatively associated with insect‐ and disease‐caused mortalities; (3) functional diversity was negatively associated with fire‐ and disease‐caused mortalities and (4) more phylogenetically related species had more similar mortality rates by insect and disease but not fire. Moreover, the FIRETEC model showed increasing canopy consumption by fire in stands with greater SSD. Together, the different tree mortalities during drought associated with SSD more consistently than the other biodiversity metrics were evaluated. Synthesis . Our results suggest that SSD could be considered in modelling forest dynamics and planning management to sustain forest health under disturbances.
Salinity exposure affects lower-canopy specific leaf area of upland trees in a coastal deciduous forest
Sea level rise and increasing storm surges are likely to affect the canopy physiology, ecology, and structure of coastal forests, even well in advance of tree mortality. Laboratory and greenhouse studies have documented that saltwater exposure can trigger changes in leaf-level physiology and morphology, but few in situ studies have examined how tree-specific leaf area (SLA), the ratio of leaf area to mass and a crucial trait and model parameter, is affected by saline soils. We conducted an observational study of SLA in a mid-Atlantic (USA) coastal deciduous forest, taking advantage of a natural gradient in salinity along a tidal creek. Measured SLA of the 239 trees and seven species sampled ranged from Carya glabra (N = 6 trees, mean SLA = 277.9±36.3cm 2 /g) to Fagus grandifolia (N=60, 321.9±62.9cm 2 g); as expected, trees species and canopy position (sun versus shade) significantly affected SLA. For trees (N=100) directly exposed to the tidal creek, salinity was highly significant after accounting for species (P<0.001), with trees in the lower reaches of the creek having lower SLA. Leaf area index (LAI), computed from SLA and litter traps, ranged from 4.8 to 15.8 and was inversely related to salinity exposure; the spatial variability in leaf litter production contributed much more to LAI uncertainty than did SLA variability. These in situ results are correlative but consistent with the hypothesis, based on previous greenhouse studies, that the stress of chronic salinity exposure changes species’ leaf morphology. Our findings are useful for understanding the growing effects of saltwater intrusion into upland forests, as well as parameterizing and testing ecosystem-scale models simulating forest stressors and disturbances at the terrestrial-aquatic interface.
Soil Particulate Organic Matter is Related to Ericoid Mycorrhizal Shrubs, not Ectomycorrhizal Trees, in a Temperate Forest
Mycorrhizal associations are key drivers of soil biogeochemistry, but previous studies have focused almost exclusively on ectomycorrhizal (EcM) and arbuscular mycorrhizal (AM) associations. Ericoid mycorrhizal (ErM) shrubs frequently occur in forest understories and are expanding in response to disturbance, but are rarely considered in biogeochemical frameworks. We investigated the relationships of understory ErM shrubs and overstory trees on carbon (C) and nitrogen (N) in soil organic matter fractions in a southern Appalachian temperate forest. We sampled the 0–10 cm mineral soil layer from 43 plots at the Coweeta Hydrologic Laboratory, across gradients in overstory EcM dominance and understory ErM shrub biomass. Soil C:N ratios increased with both increasing EcM dominance and increasing ErM shrub biomass. However, total particulate organic matter (POM) C, and the proportion of C and N held in POM increased with increasing ErM shrub biomass, but not with increasing EcM dominance. In contrast, mineral-associated organic matter (MAOM) C and N were negatively associated with EcM dominance, but were not related to ErM shrubs. Our findings suggest that ErM shrubs facilitate POM formation while AM trees promote MAOM formation. Because ErM shrub biomass represents a small fraction of total forest biomass, our work provides evidence that ErM shrubs have an outsized effect on soil organic matter, which advocates for their inclusion in mechanistic studies and biogeochemical frameworks.
Increasing Liana Abundance and Associated Reductions in Tree Growth in Secondary Seasonally Dry Tropical Forest
Lianas are thought to be increasing and altering tree growth and ecosystem productivity in tropical forests, but less research has focused on secondary or seasonally dry tropical forest. We report on an 11-year study of tree growth and liana presence from Guanacaste, Costa Rica, where we measured the diameter growth and liana presence on more than 1,700 trees in regenerating forest of different ages. We find that the proportion of trees without lianas is decreasing and the number of trees with lianas occupying more than 10% of tree’s crowns is increasing. We also find that lianas are affecting the diameter growth of trees. The 11-year average relative growth rates of trees with lianas in more than 10% of the tree’s crown are lower than the relative growth of trees with no lianas or lianas in less than 10% of their crown. Year-to-year, tree relative growth rate is related to annual precipitation and tree diameter. However, trees that were heavily infested with lianas (i.e., with lianas in more than 50% of their crowns) had lower relative growth and a weaker precipitation-growth relationship. This work underscores the value of long-term longitudinal data in secondary forest and adds critical data on dry forest liana abundance change.
Regulation of Transpiration and Whole‐Tree Crown Conductance in Tropical Forests
We found a consistent, emergent relationship between tropical tree crown conductance and its sensitivity to vapour pressure deficit across diverse species and sites. This reveals convergent stomatal–hydraulic regulation alongside distinct drought sensitivities among plant functional types.
Damage to living trees contributes to almost half of the biomass losses in tropical forests
Abstract Accurate estimates of forest biomass stocks and fluxes are needed to quantify global carbon budgets and assess the response of forests to climate change. However, most forest inventories consider tree mortality as the only aboveground biomass (AGB) loss without accounting for losses via damage to living trees: branchfall, trunk breakage, and wood decay. Here, we use ~151,000 annual records of tree survival and structural completeness to compare AGB loss via damage to living trees to total AGB loss (mortality + damage) in seven tropical forests widely distributed across environmental conditions. We find that 42% (3.62 Mg ha −1 year −1 ; 95% confidence interval [CI] 2.36–5.25) of total AGB loss (8.72 Mg ha −1 year −1 ; CI 5.57–12.86) is due to damage to living trees. Total AGB loss was highly variable among forests, but these differences were mainly caused by site variability in damage‐related AGB losses rather than by mortality‐related AGB losses. We show that conventional forest inventories overestimate stand‐level AGB stocks by 4% (1%–17% range across forests) because assume structurally complete trees, underestimate total AGB loss by 29% (6%–57% range across forests) due to overlooked damage‐related AGB losses, and overestimate AGB loss via mortality by 22% (7%–80% range across forests) because of the assumption that trees are undamaged before dying. Our results indicate that forest carbon fluxes are higher than previously thought. Damage on living trees is an underappreciated component of the forest carbon cycle that is likely to become even more important as the frequency and severity of forest disturbances increase.
Geometric-optical Modeling of a Conifer Forest Canopy
The objective of this research is to explore how the geometry of trees in forest stands influences the reflectance of the forest as imaged from space. Most plant canopy modeling has viewed the canopy as an assemblage of plane-parallel layers on top of a soil surface. For these models, leaf angle distribution, leaf area index, and the angular transmittance and reflectance of leaves are the primary optical and geometric parameters. Such models are now sufficiently well developed to explain most of the variance in angular reflectance measurements observed from homogeneous plant canopies. However, forest canopies as imaged by airborne and spaceborne scanners exhibit considerable variance at quite a different scale. Brightness values vary strongly from one pixel to the next primarily as a function of the number of trees they contain. At this scale, the forest canopy is nonuniform and discontinuous. This research focuses on a discrete-element, geometric-optical view of the forest canopy.
Canopy Spectral Invariants. Part 1: A New Concept in Remote Sensing of Vegetation
The concept of canopy spectral invariants expresses the observation that simple algebraic combinations of leaf and canopy spectral reflectance become wavelength independent and determine two canopy structure specific variables the recollision and escape probabilities. These variables specify an accurate relationship between the spectral response of a vegetation canopy to incident solar radiation at the leaf and the canopy scale. They are sensitive to important structural features of the canopy such as forest cover, tree density, leaf area index, crown geometry, forest type and stand age. This paper presents the mathematical basis of the concept which is linked to eigenvalues and eigenvectors of the three-dimensional radiative transfer equation.
Canonical Vegetation Simulations
LANL employed the FIRETEC model to produce a suite of simulations of flow around trees and forests. The purpose of this suite of simulations is to provide detailed simulations of the effects of various types of trees and groups of trees including the mean velocity and turbulence fields. This suite includes various tree densities ranging from individual trees, wind breaks (i.e., lateral rows of trees), orchards, and forests of various densities. In addition to the simulations that we have already run, we have developed tools to facilitate more simulations in the future.
Plasticity in branching and crown architecture helps explain how tree diversity increases tropical forest production
This article is a Commentary on Guillemot et al . (2020), 228 : 1256–1268 .
Final Technical Report: Unraveling the mechanisms of below- and aboveground liana-tree competition in tropical forests
This report summarizes the project objectives and the progress made toward reaching those objectives. We also indicate manuscripts, datasets, and training that resulted from the award.