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NASA NTRS2001

Forced and Free Intra-Seasonal Variability Over the South Asian Monsoon Region Simulated by 10 AGCMs

This study examines intra-seasonal (20-70 day) variability in the South Asian monsoon region during 1997/98 in ensembles of 10 simulations with 10 different atmospheric general circulation models. The 10 ensemble members for each model are forced with the same observed weekly sea surface temperature (SST) but differ from each other in that they are started from different initial atmospheric conditions. The results show considerable differences between the models in the simulated 20-70 day variability, ranging from much weaker to much stronger than the observed. A key result is that the models do produce, to varying degrees, a response to the imposed weekly SST. The forced variability tends to be largest in the Indian and western Pacific Oceans where, for some models, it accounts for more than 1/4 of the 20-70 day intra-seasonal variability in the upper level velocity potential during these two years. A case study of a strong observed MJO (intraseasonal oscillation) event shows that the models produce an ensemble mean eastward propagating signal in the tropical precipitation field over the Indian Ocean and western Pacific, similar to that found in the observations. The associated forced 200 mb velocity potential anomalies are strongly phase locked with the precipitation anomalies, propagating slowly to the east (about 5 m/s) with a local zonal wave number two pattern that is generally consistent with the developing observed MJO. The simulated and observed events are, however, approximately in quadrature, with the simulated response 2 leading by 5-10 days. The phase lag occurs because, in the observations, the positive SST anomalies develop upstream of the main convective center in the subsidence region of the MJO, while in the simulations, the forced component is in phase with the SST. For all the models examined here, the intraseasonal variability is dominated by the free (intra-ensemble) component. The results of our case study show that the free variability has a predominately zonal wave number one pattern, and has propagation speeds (10 - 15 m/s) that are more typical of observed MJO behavior away from the convectively active regions. The free variability appears to be synchronized with the forced response, at least, during the strong event examined here. The results of this study support the idea that coupling with SSTs plays an important, though probably not dominant, role in the MJO. The magnitude of the atmospheric response to the SST appears to be in the range of 15% - 30% of the 20-70 day variability over much of the tropical eastern Indian and western Pacific Oceans. The results also highlight the need to use caution when interpreting atmospheric model simulations in which the prescribed SST resolve MJO time scales.

Wu, Man Li C.↗

NASA NTRS2000

Adaptation of the phase of the human linear vestibulo-ocular reflex (LVOR) and effects on the oculomotor neural integrator

The phase of the translational linear VOR (LVOR) can be adaptively modified by exposure to a visual-vestibular mismatch. We extend here our earlier work on LVOR phase adaptation, and discuss the role of the oculomotor neural integrator. Ten subjects were oscillated laterally at 0.5 Hz, 0.3 g peak acceleration, while sitting upright on a linear sled. LVOR was assessed before and after adaptation with subjects tracking the remembered location of a target at 1 m in the dark. Phase and gain were measured by fitting sine waves to the desaccaded eye movements, and comparing sled and eye position. To adapt LVOR phase, the subject viewed a computer-generated stereoscopic visual display, at a virtual distance of 1 m, that moved so as to require either a phase lead or a phase lag of 53 deg. Adaptation lasted 20 min, during which subjects were oscillated at 0.5 Hz/0.3 g. Four of five subjects produced an adaptive change in the lag condition (range 4-45 deg), and each of five produced a change in the lead condition (range 19-56 deg), as requested. Changes in drift on eccentric gaze suggest that the oculomotor velocity-to-position integrator may be involved in the phase changes.

Non-NASA Center↗

NASA NTRS2007

The Chaotic Light Curves of Accreting Black Holes

We present model light curves for accreting Black Hole Candidates (BHC) based on a recently developed model of these sources. According to this model, the observed light curves and aperiodic variability of BHC are due to a series of soft photon injections at random (Poisson) intervals and the stochastic nature of the Comptonization process in converting these soft photons to the observed high energy radiation. The additional assumption of our model is that the Comptonization process takes place in an extended but non-uniform hot plasma corona surrounding the compact object. We compute the corresponding Power Spectral Densities (PSD), autocorrelation functions, time skewness of the light curves and time lags between the light curves of the sources at different photon energies and compare our results to observation. Our model reproduces the observed light curves well, in that it provides good fits to their overall morphology (as manifest by the autocorrelation and time skewness) and also to their PSDs and time lags, by producing most of the variability power at time scales 2 a few seconds, while at the same time allowing for shots of a few msec in duration, in accordance with observation. We suggest that refinement of this type of model along with spectral and phase lag information can be used to probe the structure of this class of high energy sources.

Kazanas, Demosthenes↗

NASA NTRS1976

A visual motion simulator for general aviation compensated within the nonlinear adaptive washout for actuator lag

A description is presented of the general aviation aircraft simulator recently acquired by the Langley Research Center, summarizing the complement of instruments, radio/navigation equipment, control loading, and other features. Emphasis is placed mainly on the two-degree-of-freedom motion drives developed for this simulator and the presentation of the dynamic response of the motion system (without washout) in terms of amplitude ratio and phase lag as a function of frequency. The nonlinear adaptive washout based on continuous steepest descent optimization presents cues in pitch rate, surge, roll rate, and sway, and allows for actuator lag compensation.

Ashworth, B. R.↗

NASA NTRS1974

The modulation of low energy galactic cosmic rays

It has been clearly established by several different experiments that following the last solar maximum (about 1969), there was a significant phase lag or hysteresis effect between changes in the low rigidity galactic cosmic rays and the high rigidity components. It was possible to explain this in terms of the diffusion-convection-modulation theory by varying either the diffusion coefficient or the size of the modulation region as a function of time. During the ensuing recovery phase of the solar modulated spectra, at the mid point toward the minimum of the solar activity, new striking features have been observed, and these new observations are discussed.

Van Hollebeke, M. A. I.↗

NASA NTRS1977

Study of the use of a nonlinear, rate limited, filter on pilot control signals

The use of a filter on the pilot's control output could improve the performance of the pilot-aircraft system. What is needed is a filter with a sharp high frequency cut-off, no resonance peak, and a minimum of lag at low frequencies. The present investigation studies the usefulness of a nonlinear, rate limited, filter in performing the needed function. The nonlinear filter is compared with a linear, first order filter, and no filter. An analytical study using pilot models and a simulation study using experienced test pilots was performed. The results showed that the nonlinear filter does promote quick, steady maneuvering. It is shown that the nonlinear filter attenuates the high frequency remnant and adds less phase lag to the low frequency signal than does the linear filter. It is also shown that the rate limit in the nonlinear filter can be set to be too restrictive, causing an unstable pilot-aircraft system response.

Adams, J. J.↗

NASA NTRS1950

Theoretical Investigation of a Proportional-Plus-Flicker Automatic Pilot

The proportional-plus-flicker automatic pilot operates by a nonlinear principle whereby a fast-acting flicker servomotor response is combined with a low-speed proportional servomotor response for the purpose of obtaining supersonic stability and control. Essentially, the autopilot maintains a zero reference about which the output is proportional to the input. However, a flicker response overrides this proportional response at a fixed angle of gimbal displacement on either side of the zero gyroscope reference. Therefore, in contrast to other high speed control systems, the design requirements are simplified because the two components of the proportional-flicker control system are easy to build separately and they can be combined in a relatively simple manner. By application of the proportional-flicker principle, satisfactory stability can be obtained by the proper adjustment of the variable factors in the autopilot mechanism; namely, the proportional gain, the amplitude of flicker control deflection, the autopilot time-lag factor (the time-lag between flicker and proportional operation), and the point in the range that the autopilot switches from a flicker to a proportional system. There is a possibility that these factors can be adjusted so that a more rapid response time (the time to reach steady state) is obtained with the non-linear proportional-flicker autopilot than with a purely linear proportional autopilot. For the main part of this analysis, the proportional part of the system is approximated by a zero-phase-lag proportional autopilot with the assumption that the control surface moves instantaneously at the point where the system switches from flicker to proportional. Good correlation is shown between the results obtained by this method and results obtained by using a close approximation of an actual autopilot transfer function for proportional autopilot operation.

Seaberg, Ernest C.↗

NASA NTRS2010

A Singular Perturbation Approach for Time-Domain Assessment of Phase Margin

This paper considers the problem of time-domain assessment of the Phase Margin (PM) of a Single Input Single Output (SISO) Linear Time-Invariant (LTI) system using a singular perturbation approach, where a SISO LTI fast loop system, whose phase lag increases monotonically with frequency, is introduced into the loop as a singular perturbation with a singular perturbation (time-scale separation) parameter Epsilon. First, a bijective relationship between the Singular Perturbation Margin (SPM) max and the PM of the nominal (slow) system is established with an approximation error on the order of Epsilon(exp 2). In proving this result, relationships between the singular perturbation parameter Epsilon, PM of the perturbed system, PM and SPM of the nominal system, and the (monotonically increasing) phase of the fast system are also revealed. These results make it possible to assess the PM of the nominal system in the time-domain for SISO LTI systems using the SPM with a standardized testing system called "PM-gauge," as demonstrated by examples. PM is a widely used stability margin for LTI control system design and certification. Unfortunately, it is not applicable to Linear Time-Varying (LTV) and Nonlinear Time-Varying (NLTV) systems. The approach developed here can be used to establish a theoretical as well as practical metric of stability margin for LTV and NLTV systems using a standardized SPM that is backward compatible with PM.

Zhu, J. Jim↗

DOE OSTI2026

Xylose metabolic engineering of Issatchenkia orientalis for 3-hydroxypropionic acid production from cellulosic hydrolysate without nutrient supplementation

Bioconversion of lignocellulosic biomass offers a promising alternative to petroleum-based chemical production. However, inefficient xylose utilization and toxic compounds in cellulosic hydrolysate limit microbial fermentation, as the hydrolysate contains substantial amounts of xylose in addition to glucose. To address these challenges, we engineered Issatchenkia orientalis to produce 3-hydroxypropionic acid (3-HP) directly from sorghum hydrolysate under low-pH conditions. A heterologous xylose utilization pathway consisting of XYL1, XYL2, and XYL3 from Scheffersomyces stipitis was introduced into an engineered 3-HP producing strain, enabling efficient conversion of xylose to 3-HP. The engineered strain produced 46.8 g/L 3-HP from sorghum hydrolysate without nutrient supplementation. To eliminate the lag phase under low-pH conditions, fermentation was conducted at pH 6.0 for the first three days, after which pH control was discontinued and in situ 3-HP accumulation buffered the culture. This partial pH control strategy increased 3-HP productivity by 55% from 0.20 to 0.31 g/L∙h, while maintaining low-pH conditions. Introducing an additional copy of XYL2 further increased 3-HP titer to 53.5 g/L and the yield by 33%, from 0.30 to 0.40 g/g sugars, with pH reaching 4.5 at the end of fermentation. This represents one of the highest reported 3-HP titers and yields from cellulosic hydrolysate without additional nutrient supplementation. This work demonstrates a nutrient-independent and low-pH bioprocess for upgrading lignocellulosic hydrolysate into 3-HP, highlighting the industrial potential of engineered xylose-utilizing I. orientalis for sustainable production of platform chemicals from renewable feedstocks.

3-Hydroxypropionic acid↗

DOE OSTI2022

Microscale Colocalization of Cascade Enzymes Yields Activity Enhancement

Colocalization of cascade enzymes is broadly discussed as a phenomenon that can boost the cascade reaction throughput, although a direct experimental verification is often challenging. This is mainly due to difficulties in establishing proper size regimes and in the analytical quantification of colocalization effect with adequate experimental systems and simulations. In this study, by taking advantage of reversible DNA-directed colocalization of enzymes on microspheres, we established a cascade system that can be used to directly evaluate the colocalization effect with exactly the same experimental settings except for the state of enzyme dispersion. In the regime of highly dilute microspheres of particular sizes, the colocalized cascade shows enhanced activity compared with the freely diffusing cascade, as evidenced by a shortened lag phase in the time-course production. Reaction-diffusion modeling reveals that the enhancement can be ascribed to the initial accumulation of intermediate substrate around the colocalized enzymes and is found to be carrier-size-dependent. Further, this work demonstrates the dependence of the colocalization effect of enzyme cascades on an interplay of nano-and microscales, lending theoretical support to the rational design of highly efficient multienzyme catalysts.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

DOE OSTI2021

Immobilization of active ammonia-oxidizing archaea in hydrogel beads

Abstract Ammonia-oxidizing archaea (AOA) are major players in the nitrogen cycle but their cultivation represents a major challenge due to their slow growth rate and limited tendency to form biofilms. In this study, AOA was embedded in small (~2.5 mm) and large (~4.7 mm) poly(vinyl alcohol) (PVA)—sodium alginate (SA) hydrogel beads cross-linked with four agents (calcium, barium, light, or sulfate) to compare the differences in activity, the diffusivity of nitrogen species (NH 4 + , NO 2 − , and NO 3 − ), and polymer leakage in batch systems over time. Sulfate-bound PVA-SA beads were the most stable, releasing the lowest amount of polymer without shrinking. Diffusion coefficients were found to be 2 to 3 times higher in hydrogels than in granules, with ammonium diffusivity being ca . 35% greater than nitrite and nitrate. Despite a longer lag phase in small beads, embedded AOA sustained a high per volume rate of ammonia oxidation compatible with applications in research and wastewater treatment.

42 ENGINEERING↗

DOE OSTI2025

Simulations of saturated MHD activity in the HBT-EP tokamak

The NIMROD code is used to perform simulations of MHD activity in the HBT-EP tokamak, including the effect of a resistive wall. Linear simulations are conducted to scan current and pressure profiles to establish self-consistent baseline equilibria that result in MHD instabilities with low error between experimental diagnostics and synthetic equivalents. A family of such equilibria is found with relatively peaked current and pressure profiles. Nonlinear simulations are performed using the optimal equilibrium, which is linearly unstable to a Resistive Wall Mode—stable in the ideal wall limit and with an Alfvénic growth rate in the no-wall limit. Using resistive wall boundary conditions, nonlinear Hall MHD simulations yield a rotating, saturated n=1 mode similar to the type observed experimentally in HBT-EP discharges. An n=1 mode around the q=2 surface mediates a localized axisymmetric perturbation that flattens the plasma current from a linearly unstable state to a 3D, rotating, stable state. During the saturated period, periodic changes in inter-diagnostic phase lag allow for qualitative estimations of effective, macroscopic transport coefficients used in MHD closure models and could be extended to model post-disruption MHD structure rotation after thermal quenches seen in HBT-EP.

Arnold, David A. (ORCID:0009000059535761)↗

DOE OSTI2020

Modulation of seismic noise near the San Jacinto fault in southern California: origin and observations of the cyclical time dependence and associated crustal properties

SUMMARY We examine the cyclic amplitude variation of seismic noise recorded by continuous three-component broad-band seismic data with durations spanning 91–713 d (2008–2011) from three different networks: Anza seismic network, IDA network and the transportable seismic array. These stations surround the San Jacinto Fault Zone (SJFZ) in southern California. We find the seismic noise amplitudes exhibit a cyclical variation between 0.3 and 7.2 Hz. The high-frequency (≥0.9 Hz) noise variations can be linked to human activity and are not a concern. Our primary interest is signals in the low frequencies (0.3–0.9 Hz), where the seismic noise is modulated by semi-diurnal tidal mode M2. These long-period (low-frequency) variations of seismic noise can be attributed to a temporal change of the ocean waves breaking at the shoreline, driven by ocean tidal loading. We focus on the M2 variation of seismic noise at f = 0.6 Hz, travelling distances of ∼92 km through the crust from offshore California to the inland Anza, California, region. Relative to the shoreline station, data from the inland stations show a phase lag of ∼ –12°, which we attribute to the cyclic change in M2 that can alter crustal seismic attenuation. We also find that for mode M2 at 0.6 Hz, the amplitude variations of the seismic quality factor (Q) depend on azimuth and varies from 0.22 per cent (southeast to northwest) to 1.28 per cent (northeast to southwest) with Q = 25 for Rayleigh waves. We propose the direction dependence of the Q variation at 0.6 Hz reflects the preferred orientation of subfaults parallel to the main faulting defined by the primarily N45°W strike of the SJFZ.

Geochemistry & Geophysics↗

DOE OSTI2022

A New Type of Weak Grid IBR Oscillations

This letter presents the discovery of a new type oscillations associated with inverter-based resources (IBRs) in weak grids. While typical weak grid oscillations become worse when the grid strength decreases and the power exporting level increases, this new type of oscillations appear when the grid becomes weaker and the power exporting level decreases. Electromagnetic transient (EMT) simulation results are presented, along with eigenvalue loci for a varying power. The notable signatures of such oscillations are also remarked. In further analysis, a feedback system consisting of two blocks is derived with one block associated with the phase-locked-loop (PLL) and the other associated with the rest of the system. Here, this feedback system quantitatively demonstrates why insufficient damping in the PLL may be an issue for stability. Open-loop analysis shows that a larger phase lag in angle tracking in the low-frequency range due to high power exporting level at the weak grid condition is beneficial to the open-loop poles introduced by the PLL. And this is the reason why such oscillations may appear when power is ramping down.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2021

Development of dual‐inducible duet‐expression vectors for tunable gene expression control and CRISPR interference‐based gene repression in Pseudomonas putida KT2440

Summary The development of P. putida as an industrial host requires a sophisticated molecular toolbox for strain improvement, including vectors for gene expression and repression. To augment existing expression plasmids for metabolic engineering, we developed a series of dual‐inducible duet‐expression vectors for P. putida KT2440. A number of inducible promoters (P lac , P tac , P tetR/tetA and P bad ) were used in different combinations to differentially regulate the expression of individual genes. Protein expression was evaluated by measuring the fluorescence of reporter proteins (GFP and RFP). Our experiments demonstrated the use of compatible plasmids, a useful approach to coexpress multiple genes in P. putida KT2440. These duet vectors were modified to generate a fully inducible CRISPR interference system using two catalytically inactive Cas9 variants from S. pasteurianus (dCas9) and S. pyogenes (spdCas9). The utility of developed CRISPRi system(s) was demonstrated by repressing the expression of nine conditionally essential genes, resulting in growth impairment and prolonged lag phase for P. putida KT2440 growth on glucose. Furthermore, the system was shown to be tightly regulated, tunable and to provide a simple way to identify essential genes with an observable phenotype.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Silicate minerals as a direct source of limiting nutrients: Siderophore synthesis and uptake promote ferric iron bioavailability from olivine and microbial growth

Iron is a micronutrient critical to fundamental biological processes including respiration and photosynthesis, and it can therefore impact primary and heterotrophic productivity. Yet in oxic environments, iron is highly insoluble, rendering it, in principle, unavailable as a nutrient for biological growth. Life has “solved” this problem via the invention of iron chelates, known as siderophores, that keep iron available for microbial productivity. In this work, we examined the impact of siderophore synthesis on the speciation, mobility, and bioavailability of iron from rock-forming silicate minerals—shedding new light on the mechanisms by which microbes use mineral substrates to support primary productivity, as well as the consequent effects on silicate dissolution. Growth experiments were performed with Shewanella oneidensis MR-1 in an oxic, iron-depleted minimal medium, amended with olivine minerals as the sole source of iron. Experiments included the wild-type strain MR-1, and a siderophore synthesis gene deletion mutant strain (ΔMR-1). Relative to MR-1, ΔMR-1 exhibited a very pronounced growth penalty and an extended lag phase. However, substantial growth of ΔMR-1, comparable to MR-1 growth, was observed when the mutant strain was provided with siderophores in the form of either filtrate from a well-grown MR-1 culture, or commercially available deferoxamine. These observations suggest that siderophores are critical for S. oneidensis to acquire iron from olivine. Growth-limiting concentrations of deferoxamine amendments were observed to be ≤5–10 µM, concentrations significantly lower than previously recorded as necessary to impact mineral dissolution rates. X-ray photoelectric spectroscopy analyses of the incubated olivine surfaces suggest that siderophores deplete mineral surface layers of ferric iron. Combined, these results demonstrate that low micromolar concentrations of siderophores can effectively mobilize iron bound within silicate minerals, supporting very significant biological growth in limiting environments. The specific mechanism would involve siderophores removing a protective layer of nanometer-thick iron oxides, enhancing silicate dissolution and nutrient bioavailability.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2025

Fate of Listeria monocytogenes Serotypes on Frozen Mixed Vegetables During Consumer‐Simulated Thawing and Storage

ABSTRACT Recent outbreaks and recalls associated with frozen vegetables in the United States and Europe have been linked to Listeria monocytogenes . This study aims to understand the extent to which frozen vegetables support the growth of L. monocytogenes once thawed and held at different temperatures. Six L. monocytogenes strains, two of each from serotypes 1/2a, 1/2b, and 4b, were individually inoculated onto frozen vegetables and stored at −18°C for 7 days. After 7 days, the vegetables were thawed and stored at 5°C or 10°C for up to 14 days or at 25°C for up to 7 days. L. monocytogenes was enumerated from the thawed vegetables throughout the storage period. Population data were fitted to the primary Baranyi model to estimate growth rates and lag phase durations; the secondary Ratkowsky square root model was used to model the relationship of the growth rates with storage temperature. Five of the L. monocytogenes strains survived and grew on the thawed vegetables (population increases of > 1 log CFU/g) stored at 5°C, and all six of the strains proliferated at 10°C and 25°C (population increases of > 3 log CFU/g after 14 days and > 4 log CFU/g after 7 days, respectively). A secondary model was successfully generated based on the growth rates of the six L. monocytogenes strains on the thawed vegetables ( r 2 = 0.8888, RMSE = 0.2057). Results from this study fill a data gap associated with L. monocytogenes survival on thawed vegetables and can be used to determine safe handling and storage practices for these products to protect public health.

Salazar, Joelle K. [Division of Food Processing Sc↗

DOE OSTI2024

Implementing Superresolution of Nonstationary Tides with Wavelets: An Introduction to CWT_Multi

Abstract Tides are often nonstationary due to nonastronomical influences. Investigating variable tidal properties implies a trade-off between separating adjacent frequencies (using long analysis windows) and resolving their time variations (short analysis windows). Previous continuous wavelet transform (CWT) tidal methods resolved tidal species. Here, we present CWT_Multi, a MATLAB code that 1) uses CWT linearity (via the “response coefficient method”) to implement superresolution, i.e., resolving tidal constituents beyond the Rayleigh criterion; 2) provides a Munk–Hasselmann constituent selection criterion appropriate for superresolution; and 3) introduces an objective, time-variable form of inference (“dynamic inference”) based on time-varying data properties. CWT_Multi resolves tidal species on time scales of days, and multiple constituents per species with fortnightly filters. It outputs astronomical phase lags and admittances, analyzes multiple records, and provides power spectra of the signal(s), residual(s), and reconstruction(s); confidence limits; and signal-to-noise ratios. Artificial data and water levels from the Lower Columbia River Estuary (LCRE) and San Francisco Bay Delta (SFBD) are used to test CWT_Multi and compare it to harmonic analysis programs NS_Tide and UTide. CWT_Multi provides superior reconstruction, detiding, dynamic analysis utility, and time resolution of constituents (but with broader confidence limits). Dynamic inference resolves closely spaced constituents (like K 1 , S 1 , and P 1 ) on fortnightly time scales, quantifying impacts of diel power peaking (with a 24-h period, like S 1 ) on water levels in the LCRE. CWT_Multi also helps quantify the impacts of high flows and a salt barrier closing on tidal properties in the SFBD. On the other hand, CWT_Multi does not excel at prediction, and results depend on analysis details, as for any method applied to nonstationary data. Significance Statement Ocean tides, especially in coastal and estuarine systems, are often nonstationary, in the sense that the mean and standard deviation of tidal properties vary over time, usually in response to some nontidal process. We introduce here a MATLAB code, CWT_Multi, that uses wavelet transforms to resolve both tidal species and constituents on time scales from a few days to months. Our code accommodates multiple scalar time series and has typical tidal analysis features like constituent selection and inference, plus two forms of uncertainty analyses. It is flexible, allowing the user to adapt analysis properties to diverse datasets. CWT_Multi is applicable to many problems involving time-variable tides, including sea level rise, compound flooding, sediment transport, and wetland habitat analyses. Application to vector data is a straightforward extension, but further development of our uncertainty analysis is merited. Because nonstationary tidal analysis is rapidly advancing, we also define the features of a “well-formed” analysis code.

Lobo, Matthew↗