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DOE OSTI2022

Injection of electron beams into two laser wakefields and generation of electron rings

Throughout this work, mutual injection of electron beams into two laser plasma wakefields was observed experimentally when driving laser pulses interfered in plasma at a small crossing angle and were slightly relatively delayed, approximately by one pulse duration. Particle-in-cell simulations revealed that the mutual injection was sensitive to the spatial overlap of the laser pulses, which therefore could be used to control the mutual injection. The dual synchronized, femtosecond electron beams are potentially useful for pump-probe experiments in ultrafast science. In addition, out-of-axis ring-shaped electron beams were detected in both experiments and simulations.

47 OTHER INSTRUMENTATION↗

DOE OSTI2023

Grid Strength Assessment for High Levels of Inverter-based Resources in the Puerto Rico Power

A system-wide assessment of the Puerto Rico power system grid strength is studied when considering high levels of inverter-based resource penetration. This study is carried out in PSSE and assesses the impact of inverter-based resource (IBR) contributions in response to three-phase ground faults. A hypothetical 100% inverter-based generation scenario is created to assess the extreme impact on short circuit levels and a realistic scenario is considered to assess the impact to short circuit ratios. The overall conclusion is that short circuit capacity and current will drastically decrease in a high IBR scenario, an effect that is quantified in this paper. The short circuit ratio metric is typically used to assess the impact of IBR but generally overestimates grid strength due to not accounting for the impact from multiple IBRs. Other methods such as equivalent circuit based short circuit ratio and weighted short circuit ratio offer a more comprehensive consideration for multiple IBRs and can better account for their mutual interactions. The work presented in this paper is part of the PR100 study.

inverter based resources, PR100, grid strength↗

DOE OSTI2024

Approximate Quantum Codes From Long Wormholes

We discuss families of approximate quantum error correcting codes which arise as the nearly-degenerate ground states of certain quantum many-body Hamiltonians composed of non-commuting terms. For exact codes, the conditions for error correction can be formulated in terms of the vanishing of a two-sided mutual information in a low-temperature thermofield double state. We consider a notion of distance for approximate codes obtained by demanding that this mutual information instead be small, and we evaluate this mutual information for the SYK model and for a family of low-rank SYK models. After an extrapolation to nearly zero temperature, we find that both kinds of models produce fermionic codes with constant rate as the number, N , of fermions goes to infinity. For SYK, the distance scales as N 1 / 2 , and for low-rank SYK, the distance can be arbitrarily close to linear scaling, e.g. N .99 , while maintaining a constant rate. We also consider an analog of the no low-energy trivial states property which we dub the no low-energy adiabatically accessible states property and show that these models do have low-energy states that can be prepared adiabatically in a time that does not scale with system size N . We discuss a holographic model of these codes in which the large code distance is a consequence of the emergence of a long wormhole geometry in a simple model of quantum gravity.

Physics↗

DOE OSTI2020

Enhanced Inductance and Winding Loss Model for Coupled Inductors

An enhanced model for coupled inductors with significant fringing effect is developed in the form of equivalent circuit. The equivalent circuit is derived from a physical model that captures the flux paths through a leakage inductor and two mutual inductors on the primary and secondary side. A mutual winding resistor is added in parallel with the mutual inductor to model the winding loss affected by the fringing flux that penetrates the winding. The equivalent circuit is verified by finite-element simulation (FES) and successfully predicts the open-circuit winding loss and winding loss variation with phase-shift impact.

Xue, Lincoln↗

DOE OSTI2022

System and method for reasoning about the optimality of a configuration parameter of a distributed system

Embodiments provide a system and method for reasoning about the optimality of a configuration parameter of a distributed system. During operation, the system obtains a multi-layer graph for a system with a plurality of components, wherein the multi-layer graph comprises a configuration subgraph, a vulnerability subgraph, and a dependency subgraph. The system determines, based on the multi-layer graph, constraint relationships associated with configuration parameters for the components, wherein the constraint relationships include security constraints and functionality constraints. The system computes an unsatisfiable core which comprises a set of mutually incompatible constraints. The system resolves, based on a strategy and over multiple iterations, the unsatisfiable core by analyzing one pair of mutually incompatible constraints per a respective iteration, to obtain a new unsatisfiable core which comprises a smaller number of mutually incompatible constraints than the computed unsatisfiable core or a previously computed unsatisfiable core from a most recent iteration.

Soroush, Hamed↗

DOE OSTI2022

Machine learning-informed and synthetic biology-enabled semi-continuous algal cultivation to unleash renewable fuel productivity

Abstract Algal biofuel is regarded as one of the ultimate solutions for renewable energy, but its commercialization is hindered by growth limitations caused by mutual shading and high harvest costs. We overcome these challenges by advancing machine learning to inform the design of a semi-continuous algal cultivation (SAC) to sustain optimal cell growth and minimize mutual shading. An aggregation-based sedimentation (ABS) strategy is then designed to achieve low-cost biomass harvesting and economical SAC. The ABS is achieved by engineering a fast-growing strain, Synechococcus elongatus UTEX 2973, to produce limonene, which increases cyanobacterial cell surface hydrophobicity and enables efficient cell aggregation and sedimentation. SAC unleashes cyanobacterial growth potential with 0.1 g/L/hour biomass productivity and 0.2 mg/L/hour limonene productivity over a sustained period in photobioreactors. Scaling-up the SAC with an outdoor pond system achieves a biomass yield of 43.3 g/m 2 /day, bringing the minimum biomass selling price down to approximately $281 per ton.

09 BIOMASS FUELS↗

DOE OSTI2024

Design Optimization and Measurement Uncertainty of an Electromagnetic Level Sensor for Liquid Metal Reactors

Here, this article describes the design and operation of a prototype mutual inductance level sensor (MILS) and the development and validation of a finite-element analysis (FEA) model describing its behavior. The MILS was designed for use in liquid sodium up to temperatures of 650 °C in the Mechanisms Engineering Test Loop (METL) at Argonne National Laboratory (ANL). Preliminary testing was performed in a room temperature test stand with aluminum acting as an analog for the sodium to better understand sensor performance and provide accurate code validation data. This experimental data, along with material properties found in literature, were used to validate an FEA model in ANSYS Maxwell. The validated ANSYS Maxwell model was used to examine the performance of the MILS in various environments and under various operating conditions. Simulations suggest the following: The MILS will perform adequately in liquid sodium and liquid lead at temperatures up to 650 °C . The temperature dependence of electrical conductivity imposes a temperature dependence on the sensor that requires proper compensation. The MILS signal sensitivity is maximized when mutual inductance between sensor coils is maximized, and sensor geometry should be selected to account for this factor. The operating frequency of the MILS can be optimized and is dependent on process fluid material, operating temperature, and materials/geometry of sensor system. Finally, the use of a stainless-steel isolating thimble does not adversely affect the sensor signal. The primary sources of error for this MILS system are the accuracy of the calibration standard against which the sensor is calibrated, and the temperature dependence of the sensor. This work contains all the necessary details to recreate the FEA model and results. This model can be used to optimize the performance of a MILS in any operating environment to read any electrically conductive working fluid.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2021

Quantifying the Long‐Range Coupling of Electronic Properties in Proteins with ab initio Molecular Dynamics**

Abstract The delicate interplay of covalent and non‐covalent interactions in proteins is inherently quantum mechanical and highly dynamic in nature. To directly interrogate the evolving nature of the electronic structure of proteins, we carry out 100‐ps‐scale ab initio molecular dynamics simulations of three representative small proteins with range‐separated hybrid density functional theory. We quantify the nature and length‐scale of the coupling of residue‐specific charge probability distributions in these proteins. While some nonpolar residues exhibit expectedly narrow charge distributions, most polar and charged residues exhibit broad, multimodal distributions. Even for nonpolar residues, we observe sequence‐specific deviations corresponding to charge accumulation or depletion that would be challenging to capture in a fixed charge force field. We quantify the effect of residue‐residue interactions on charge distributions first with linear cross‐correlations. We then show how additional insight can be gained from evaluating the mutual information of charge distributions. We show that a significant number of residues couple most strongly with residues that are distant in both sequence and space over a range of secondary structures including α‐helical, β‐sheet, disulfide bridging, and lasso motifs. The mutual information analysis is necessary to capture coupling between some polar and charged residues that would be otherwise missed.

Yang, Zhongyue↗

DOE OSTI2023

Mixed-state entanglement and information recovery in thermalized states and evaporating black holes

We study the universal behavior of quantum information-theoretic quantities in thermalized isolated quantum many-body systems and evaporating black holes. In particular, we study a genuine mixed-state entanglement measure called the logarithmic negativity, other correlation measures including the Renyi negativities and the mutual information, and a signature of multipartite entanglement called the reflected entropy. We also probe the feasibility of recovering quantum information from subsystems of a thermalized quantum many-body system or from the radiation of an evaporating black hole, using quantities such as relative entropy and Petz map fidelity. A recently developed technique called the equilibrium approximation allows us to probe these quantities at finite temperature. We find striking qualitative differences from the infinite temperature case, which has been the topic of previous studies using Haar-random states. In particular, we find regimes where the logarithmic negativity is extensive but the mutual information is sub-extensive, indicating a large amount of undistillable, bound entanglement in thermalized states. For evaporating black holes at finite temperature, both the logarithmic negativity and the Petz map fidelity reveal an important new time scale t b , which is earlier than the Page time t p by a finite fraction of the total evaporation time. We find that t b , as opposed to t p , is the time scale at which quantum entanglement between different parts of the radiation becomes extensive, and the fidelity of information recovery for a large diary thrown into the black hole starts to grow.

2D Gravity↗

DOE OSTI2024

Holographic entanglement distillation from the surface state correspondence

We study correlations between geometric subfactors living on the Ryu-Takayanagi surface that bounds the entanglement wedge. Using the surface-state correspondence and the bit threads program, we are able to calculate mutual information and conditional mutual information between subfactors. This enables us to count the shared Bell pairs between subfactors, and we propose an entanglement distillation procedure over these subsystems via a SWAP gate protocol. We comment on extending to multipartite entanglement.

99 GENERAL AND MISCELLANEOUS↗

DOE OSTI2021

A systematic comparison of machine learning methods for modeling of dynamic processes applied to combustion emission rate modeling

Ten established, data-driven dynamic algorithms are surveyed and a practical guide for understanding these methods generated. Existing Python programming packages for implementing each algorithm are acknowledged, and the model equations necessary for prediction are presented. A case study on a coal-fired power plant’s NO x emission rates is performed, directly comparing each modeling method’s performance on a mutual system. Each model is evaluated by its root mean squared error (RMSE) on out-of-sample future horizon predictions. Optimal hyperparameters are identified using either an exhaustive search or genetic algorithm. The top five model structures of each method are used to recursively predict future NO x emission rates over a 60-step time horizon. The RMSE at each future timestep is determined, and the recursive output prediction trends compared against measurements in time. The GRU neural network is identified as the best candidate for representing the system, demonstrating accurate and stable predictions across the future horizon by all considered models, while satisfactory performance was observed in several of the ARX/NARX formulations. Finally, these efforts have contributed 1) a concise resource of multiple proven dynamic machine learning methods, 2) a practical guide explaining the use of these methods, effectively lowering the “barrier-to-entry” of deploying such models in control systems, 3) a comparison study evaluating each method’s performance on a mutual system, 4) demonstration of accurate multi-timestep emissions modeling suitable for systems-level control, and 5) generalizable results demonstrating the suitability of each method for prediction over a multi-step future horizon to other complex dynamic systems.

42 ENGINEERING↗

DOE OSTI2025

Allosteric prediction via convolutional neural networks and protein structural and dynamical features

Allostery is the phenomenon whereby a binding event or covalent modification at one site in a protein modulates function at a distal site, thus changing a protein’s functional state. As such, it is a ubiquitous aspect of protein functional regulation. Computationally predicting allosteric states is important as part of the broader challenge of functional annotation, but it also has practical implications for drug development, as targeting an allosteric site often affords greater specificity compared with targeting an orthosteric site. This study introduces a machine learning approach to predict the allosteric functional state using the small G-protein KRas as the model system, due to its implication in many types of cancer and being well studied as a result with many x-ray crystallographic structures of KRas available with different mutations and ligands bound. Using structural and dynamical features that can be cast as images, namely interatomic distances, contact maps, covariance, and mutual information, supervised learning was performed using convolutional neural networks. Two pretrained convolutional neural network architectures, GoogLeNet and ResNet18, were fine-tuned to classify KRas into active or inactive states based on these features. Across training regimes, atomic contact maps emerged as the most effective structural feature, whereas linearized mutual information outperformed covariance in capturing dynamical correlations relevant to allostery. Models achieved significant validation accuracy, with atomic contact maps yielding up to 90% accuracy. In conclusion, the findings suggest that integrating global structural rearrangements and correlated motion patterns with deep learning can reliably predict protein allosteric states, offering a promising framework for understanding allosteric regulation and developing targeted therapeutics.

Rajeshwar T., Rajitha [Oak Ridge National Laborato↗

DOE OSTI2021

Physics-Informed Machine Learning Models for Predicting the Progress of Reactive-Mixing

This paper presents a physics-informed machine learning (ML) framework to construct reduced-order models (ROMs) for reactive-transport quantities of interest (QoIs) based on high-fidelity numerical simu-lations. QoIs include species decay, product yield, and degree of mixing. The ROMs for QoIs are applied to quantify and understand how the chemical species evolve over time. First, high-resolution datasets for constructing ROMs are generated by solving anisotropic reaction-di?usion equations using a non-negative finite element formulation for di?erent input parameters. The reactive-mixing model input parameters are: time-scale associated with flipping of velocity, spatial-scale controlling small/large vortex structures of velocity, perturbation parameter of the vortex-based velocity, anisotropic dispersion strength/contrast, and molecular diffusion. Second, random forests, F-test, and mutual information criterion are used to evaluate the importance of model inputs/features with respect to QoIs. We observed that anisotropic dispersion strength/contrast is the most important feature and time-scale associated with flipping of velocity is the least important feature. Third, Support Vector Machines (SVM) and Support Vector Regression (SVR) are used to construct ROMs based on the model inputs. The constructed SVR-ROMs are then used to predict scaling of QoIs. We also present estimates and inequalities on the QoIs, which inform that the species decay, mix, and produce in an exponential fashion. These inequalities also inform that a radial basis function is the most suitable kernel for the SVM/SVR models for QoIs. It is observed that R2-score for SVR-ROMs on unseen data is greater than 0.9, implying that the SVR-ROMs are able to predict the reaction-diffusion system state reasonably well. Finally, in terms of the computational cost, the proposed SVM-ROMs are O(107) times faster than running a high-fidelity finite element simulation for evaluating QoIs. This makes the proposed ML-based ROMs attractive for reactive-transport sensing and real-time monitoring applications as they are significantly faster yet reasonably accurate.

Mudunuru, Maruti K.↗

DOE OSTI2023

QMMM 2023: A program for combined quantum mechanical and molecular mechanical modeling and simulations

Combined quantum mechanical and molecular mechanical (QM/MM) methods play an important role in multiscale modeling and simulations. QMMM 2023 is a general-purpose program for single-point calculations, geometry optimizations, transition-state optimizations, and molecular dynamics (MD) at the QM/MM level. It calls a QM package and an MM package to perform the required single-level calculations and combines them into a QM/MM energy by a variety of schemes. QMMM 2023 supports GAMESS-US, Gaussian, and ORCA as QM packages and Tinker as the MM package. Four types of treatments are available for embedding the QM subsystem in the MM environment: mechanical embedding with gas-phase calculations of the QM region, electronic embedding that allows polarization of the QM region by the MM environment, polarizable embedding for mutual polarization of the QM and MM regions, and flexible embedding for both mutual polarization and partial charge transfer between the QM and MM regions. Boundaries between QM and MM regions that pass through covalent bonds can be treated by several methods, including the redistributed charge (RC) scheme, redistributed charge and dipole (RCD) scheme, balanced-RC scheme, balanced-RCD scheme, screened charge scheme that takes account of charge penetration effects, and smeared charge scheme that delocalizes the MM charges near the QM–MM boundary. Geometry optimization can be done using the optimizer implemented in QMMM 2023 or the Berny optimizer in Gaussian through external calls to Gaussian. Molecular dynamics simulations can be performed at the pure-MM level, pure-QM level, fixed-partitioning QM/MM level, and adaptive-partitioning QM/MM level. As a result, the adaptive-partitioning treatments permit on-the-fly relocation of the QM–MM boundary by dynamically reclassifying atoms or groups into the QM or MM subsystems.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Symbiotic niche mapping reveals functional specialization by two ectomycorrhizal fungi that expands the host plant niche

Mutualisms are ubiquitous in natural systems, but less is known about how these positive interactions influence species distributions compared with antagonistic interactions, such as competition and predation. The niche concept is one useful approach for thinking about factors that shape species ranges, which we apply here towards understanding how the nature of plant-mycorrhizal symbioses change across large environmental gradients. We used a continuous niche mapping approach to examine how two ectomycorrhizal fungi (Thelephora terrestris, Suillus pungens) impact pine seedling growth across a two-dimensional soil nitrogen (N) and phosphorus (P) gradient. We found that ectomycorrhizal fungi improved plant growth most in nutrient addition treatments with highly imbalanced N:P ratios, demonstrating that mycorrhizal benefits depend on interactions between niche axes. Nevertheless, T. terrestris (highN:lowP) and S. pungens (lowN:highP) benefited plants most at opposite ends of the resource ratio spectrum, consistent with niche partitioning and functional specialization. While ectomycorrhizal fungi are often thought of as being most beneficial for nitrogen uptake, our results suggest that members of the Thelephoraceae may specialize in improving plant P uptake. Ectomycorrhizal colonization by a single fungus increased plant niche volume (calculated as convex hull volumes of plant growth response surfaces across N and P gradients) compared to non-mycorrhizal control plants and shows the overall positive effects of mutualisms on plant niche volume. Despite plant host benefits in S. pungens and T. terrestris single species treatments, the presence of both fungi together decreased plant niche volume. The lack of functional complementarity, despite functional specialization, indicates that in some environments, either fungal competition or the cost of maintaining a suboptimal mycorrhizal partner can limit the benefits of a higher quality partner. The niche mapping approach we present has the potential to answer fundamental questions about the dimensions of functional diversity in ectomycorrhizal fungi and the distributions of mycorrhizal symbioses.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

On the interaction of a wind turbine wake with a conventionally neutral atmospheric boundary layer

In this work, we investigate the dynamics of wind turbine tip-vortex breakdown in a conventionally neutral atmospheric boundary layer (ABL). To this end, high-resolution data are collected from large-eddy simulations of a wind turbine operating within a neutral ABL and studied by means of proper orthogonal decomposition (POD) and Fourier analysis. The high resolution of the generated data in both space and time allows us to gain insight into the tip-vortex breakdown mechanisms by (i) capturing the energy modes of the coherent structures, (ii) studying their contribution to the tip-vortex breakdown through their power spectra functions and mean kinetic energy (MKE) flux, and (iii) analysing the growth rate of each contributing perturbation frequency along tip vortices. Our analysis shows that under a fully turbulent scenario, the growth rate of perturbations along the tip vortices is largest for low wave numbers, i.e. long-wave perturbations. Additionally, the MKE flux reaches its highest value at two diameters downstream of the rotor plane, a behaviour that can be attributed to the coexistence of multiple interacting POD modes, with the streamwise vortex roller mode being the primary contributor to the total MKE flux budget, contributing approximately . Finally, comparisons with a laminar, uniform flow scenario subject to a single-frequency perturbation highlight the differences between the two ambient flow conditions. In the non-turbulent, uniform flow scenario, the growth rate attains its maximum value at a wave number corresponding to the out-of-phase mutual-inductance mechanism, whereas the MKE flux exhibits local minima and maxima along the wake and at different downstream locations depending on the perturbation frequency. Our analyses suggest that the breakdown of the wind turbine tip vortices under a fully turbulent neutral ABL inflow is due to complex interactions across a range of excitation frequencies, in which the mutual-inductance instability may not be the dominant one.

17 WIND ENERGY↗

DOE OSTI2023

Spin-related phenomena in spin 3/2 charge carrier holes systems

Charge carrier holes provide a remarkable system for spintronics and quantum information technology. In this review paper, I discuss spin-related phenomena in three-dimensional and low-dimensional hole systems. Special attention is paid to the mutual transformation of heavy and light holes at the boundary of quantum wells and wires that governs values of parameters defining hole spectra in quantum wells, wires and dots, such as effective masses, g-factors and Rashba and Dresselhaus spin–orbit constants. Recently, topological phenomena in condensed matter systems, such as emergence of Majorana zero modes and non-Abelian phases in the fractional quantum Hall effect, sparked considerable interest of researchers. Charge carrier holes turn out to be a remarkable setting for possible observation of these phenomena and advancing topological quantum computing. I discuss the spectra and wavefunctions of two-dimensional holes in magnetic field. While there is a semiclassical range of parameters when heavy and light holes can be described by equidistant Landau levels, ground-level holes and holes in a few low-lying excited states behave as species completely different from electrons. Especially interesting are crossings in hole spectra in magnetic field. Hole–hole interactions can substantially differ from electron–electron interactions. Apart from the difference in exchange splitting, this shows in possible emergence of even denominator fractional quantum Hall state in the ground hole level in magnetic field. I also briefly discuss spintronic phenomena, such as mutual transformation of angular momentum (spin) of holes and electric current, as well as spin-related interference effects in hole transport. Recent developments in a system of Ge hole quantum dots offer new perspectives for hole-based systems.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2024

Informative and non-informative decomposition of turbulent flow fields

Not all the information in a turbulent field is relevant for understanding particular regions or variables in the flow. Here, we present a method for decomposing a source field into its informative Φ I (x, t) and residual Φ R (x, t) components relative to another target field. The method is referred to as informative and non-informative decomposition (IND). All the necessary information for physical understanding, reduced-order modelling and control of the target variable is contained in Φ I (x, t), whereas Φ R (x, t) offers no substantial utility in these contexts. The decomposition is formulated as an optimisation problem that seeks to maximise the time-lagged mutual information of the informative component with the target variable while minimising the mutual information with the residual component. The method is applied to extract the informative and residual components of the velocity field in a turbulent channel flow, using the wall shear stress as the target variable. We demonstrate the utility of IND in three scenarios: (i) physical insight into the effect of the velocity fluctuations on the wall shear stress; (ii) prediction of the wall shear stress using velocities far from the wall; and (iii) development of control strategies for drag reduction in a turbulent channel flow using opposition control. In case (i), IND reveals that the informative velocity related to wall shear stress consists of wall-attached high- and low-velocity streaks, collocated with regions of vertical motions and weak spanwise velocity. This informative structure is embedded within a larger-scale streak–roll structure of residual velocity, which bears no information about the wall shear stress. In case (ii), the best-performing model for predicting wall shear stress is a convolutional neural network that uses the informative component of the velocity as input, while the residual velocity component provides no predictive capabilities. Finally, in case (iii), we demonstrate that the informative component of the wall-normal velocity is closely linked to the observability of the target variable and holds the essential information needed to develop successful control strategies.

97 MATHEMATICS AND COMPUTING↗