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At least 91 records · Page 5

Growing grasses in unprofitable areas of US Midwest croplands could increase species richness

The US has large potential to grow perennial energy crops, but because these crops are rarely grown in current agricultural landscapes, it is unclear how biodiversity may be affected. Over time, as agriculture has increased, many grassland species have declined. In addition, not all agricultural land is profitable for growing annual crops. Unprofitable areas were responsible for a loss of approximately $110 million USD per year from 2013 to 2016. Based on this, we want to know how converting less-profitable portions of agricultural fields to switchgrass, a native prairie grass, would influence species occurrence. To address this question, we developed an alternative landscape in which clustered corn/soy acres with a low return on investment (ROI) were replaced with grassland. We also developed and validated species distribution models to predict changes in species occurrence for 28 avian species in Iowa in response to landscape management. Furthermore, we compared results for three different models: Random forest (RF), Stochastic gradient boosting (GBM), and Neural network (Nnet) and found that all models performed well and predicted similar species distribution. Predicted species richness increased by 3.66% (RF), 2.79% (GBM), and 7.51% (Nnet) when we simulated a change in management for ~3% of Iowa's low ROI corn/soybean areas to grassland. If harvested, these areas could generate approximately 7.6 million dry tons/year of switchgrass for bioenergy, thereby increasing farmers earnings. Unprofitable areas tended to occur along streams, which suggest that incorporating partially harvested riparian buffers can benefit avian biodiversity, while improving water quality and reducing unnecessary costs for farmers.

59 BASIC BIOLOGICAL SCIENCES↗

Selecting Suitable Near-Native Lignins for Research

There are several methods to isolate near-native lignins, including milled-wood lignin, enzymatic lignin, cellulolytic enzyme lignin, and enzymatic mild-acidolysis lignin. Which one is the most representative of the native lignin? Herein, near-native lignins were isolated from different plant groups and structurally analyzed to determine how well these lignins represented their native lignin counterparts. Analytical methods were applied to understand the molecular weight, monomer composition, and distribution of interunit linkages in the structure of the lignins. The results indicated that either enzymatic lignin or cellulolytic enzyme lignin may be used to represent native lignin in softwoods and hardwoods. None of the lignins, however, appeared to represent native lignins in grasses (monocot plants) because of substantial syringyl/guaiacyl differences. Furthermore, complicating the understanding of grass lignin structure, large amounts of hydroxycinnamates acylate their polysaccharides and, when released, are often conflated with actual lignin monomers.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Agricultural Management Legacy Effects on Switchgrass Growth and Soil Carbon Gains

Switchgrass ( Panicum virgatum L.) is a native North American grass currently considered a high-potential bioenergy feedstock crop. However, previous reports questioned its effectiveness in generating soil organic carbon (SOC) gains, with resultant uncertainty regarding the monoculture switchgrass's impact on the environmental sustainability of bioenergy agriculture. We hypothesize that the inconsistencies in past SOC accrual results might be due, in part, to differences in prior land management among the systems subsequently planted to switchgrass. To test this hypothesis, we measured SOC and other soil properties, root biomass, and switchgrass growth in an experimental site with a 30-year history of contrasting tillage and N-fertilization treatments, 7 years after switchgrass establishment. We determined switchgrass' monthly gross primary production (GPP) for six consecutive years and conducted deep soil sampling. Nitrogen fertilization expectedly stimulated switchgrass growth; however, a tendency for better plant growth was also observed under unfertilized settings in the former no-till soil. In topsoil, SOC significantly increased from 2007 to 2023 in fertilized treatments of both tillage histories, with the greatest increase observed in fertilized no-till. Fertilized no-till also had the highest particulate organic matter content in the topsoil, with no differences among the treatments observed in deeper soil layers. However, regardless of fertilization, the tillage history had a strong effect on stratification with depth of SOC, total N, and microbial biomass C. Results suggested that historic and ongoing N fertilization had a substantial impact on switchgrass growth and soil characteristics, while tillage legacy had a much weaker, but still discernible, effect.

bioenergy crop production system↗

AmeriFlux FLUXNET-1F US-Cop Corral Pocket

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Cop Corral Pocket. This is the FLUXNET version of the carbon flux data for the site US-Cop Corral Pocket produced by applying the standard ONEFlux (1F) software. Site Description - The Corral Pocket site is located in a semi-arid grassland in southeastern Utah, just east of Canyonlands National park. For the greater part of the year, 38-80% of the ground is essentially bare. Vegetation is primarily native perennial C3/C4 grasses with annual ground converge ranging from 8-35%. Leaving the remaining 0-15% coverage to interspersed annual grasses, the remaining 0-15% coverage is occupied by annual grasses. 6-8 weeks during the late fall or winter, Livestock grazing is responsible for the majority of aboveground vegetation loss and subsequent high variability of ground coverage.

Bowling, David↗

AmeriFlux CA-EM2 Shoal Lake Manitoba

This is the AmeriFlux version of the carbon flux data for the site CA-EM2 Shoal Lake Manitoba. Site Description - This tower is located in a freshwater marsh embedded in rangeland/perennial cover in southwestern Manitoba. The wetland is 20.3 ha in size. The wetland vegetation is dominated bulrush with only small pockets of open-water. The surrounding uplands consist of native and tame grasses that are periodically grazed by cattle.

Badiou, Pascal↗

AmeriFlux FLUXNET-1F CA-EM2 Shoal Lake Manitoba

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-EM2 Shoal Lake Manitoba. This is the FLUXNET version of the carbon flux data for the site CA-EM2 Shoal Lake Manitoba produced by applying the standard ONEFlux (1F) software. Site Description - This tower is located in a freshwater marsh embedded in rangeland/perennial cover in southwestern Manitoba. The wetland is 20.3 ha in size. The wetland vegetation is dominated bulrush with only small pockets of open-water. The surrounding uplands consist of native and tame grasses that are periodically grazed by cattle.

Badiou, Pascal [Institute for Wetland and Waterfow↗

Long-term drought promotes invasive species by reducing wildfire severity

Anthropogenic climate change has increased the frequency of drought, wildfire, and invasions of non-native species. Although high-severity fires linked to drought can inhibit recovery of native vegetation in forested ecosystems, it remains unclear how drought impacts the recovery of other plant communities following wildfire. We leveraged an existing rainfall manipulation experiment to test the hypothesis that reduced precipitation, fuel load, and fire severity convert plant community composition from native shrubs to invasive grasses in a Southern California coastal sage scrub system. We measured community composition before and after the 2020 Silverado wildfire in plots with three rainfall treatments. Drought reduced fuel load and vegetation cover, which reduced fire severity. Native shrubs had greater prefire cover in added water plots compared to reduced water plots. Native cover was lower and invasive cover was higher in postfire reduced water plots compared to postfire added and ambient water plots. Our results demonstrate the importance of fuel load on fire severity and plant community composition on an ecosystem scale. Management should focus on reducing fire frequency and removing invasive species to maintain the resilience of coastal sage scrub communities facing drought. In these communities, controlled burns are not recommended as they promote invasive plants.

54 ENVIRONMENTAL SCIENCES↗

AmeriFlux US-xDS NEON Disney Wilderness Preserve (DSNY)

This is the AmeriFlux version of the carbon flux data for the site US-xDS NEON Disney Wilderness Preserve (DSNY). Site Description - The 12,000-acre Disney Wilderness Preserve straddles the headwaters of the Everglades ecosystem in south-central Florida. This site is seasonally wet and flooded. The Disney site was heavily logged and used as ranchland for decades. However, vegetation and site conditions have been restored to closely represent site condition records, documented by the area’s first Spanish missionaries. The large-scale wetland and upland restoration at Disney included the removal of non-native, invasive plants and grasses and the removal of agricultural ditches. The primary management activity is controlled burns.

Network), NEON (National Ecological Observatory↗

AmeriFlux FLUXNET-1F US-xDS NEON Disney Wilderness Preserve (DSNY)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-xDS NEON Disney Wilderness Preserve (DSNY). This is the FLUXNET version of the carbon flux data for the site US-xDS NEON Disney Wilderness Preserve (DSNY) produced by applying the standard ONEFlux (1F) software. Site Description - The 12,000-acre Disney Wilderness Preserve straddles the headwaters of the Everglades ecosystem in south-central Florida. This site is seasonally wet and flooded. The Disney site was heavily logged and used as ranchland for decades. However, vegetation and site conditions have been restored to closely represent site condition records, documented by the area’s first Spanish missionaries. The large-scale wetland and upland restoration at Disney included the removal of non-native, invasive plants and grasses and the removal of agricultural ditches. The primary management activity is controlled burns.

Network), NEON (National Ecological Observatory↗

Registration of ‘Independence’ switchgrass

Switchgrass (Panicum virgatum L.), a valuable forage and bioenergy crop, is established more easily than other native perennial warm-season grasses, but its establishment is still slower than that of annual crops. Vigorous switchgrass establishment is crucial for achieving its full potential yield and for effectively competing with weeds for water and nutrient availability. To satisfy this demand, ‘Independence’ (Reg. no. CV-295, PI 704577) switchgrass was developed at the University of Illinois at Urbana-Champaign. Independence was selected for establishment vigor, winter survivorship, and high biomass yield for two cycles from ‘Kanlow’. Here, it is characterized by rapid establishment, robust seedling growth, and the capacity to achieve peak production by the second year. Independence is well adapted to USDA hardiness zones 5b–7b. In field experiments conducted from 2016 to 2017, averaged over seven locations and all years, Independence annually yielded 13 Mg ha –1 of biomass, outperforming ‘Cave-in-Rock’ by 31%, ‘Liberty’ by 15%, ‘Shawnee’ by 42%, ‘Summer’ by 81%, and ‘Sunburst’ by 129%. In wet marginal sites in Illinois from 2020 to 2023, Independence exhibited an average biomass yield of 12 Mg ha –1 , outperforming Shawnee by 31%, Liberty by 27%, and Kanlow by 19%, indicating its potential use on less productive land for annual crops. Independence was publicly released by the University of Illinois at Urbana-Champaign in October 2021.

09 BIOMASS FUELS↗

Nonlinear drought plasticity reveals intraspecific diversity in a dominant grass species

Abstract Intraspecific diversity of dominant species in native plant communities can modulate ecosystem function under both optimal and stressful conditions. Yet, few genotype by environment interaction studies quantify differences in the shape of plasticity functions or phenotypic breakpoints across genotypes in natural populations. Using three genotypes with a history of drought selection, we performed a greenhouse study on the dominant tallgrass prairie species Andropogon gerardii . We investigated phenotypic plasticity and recovery differences among genotypes across a water availability gradient, measuring growth‐related, instantaneous and cumulative phenotypes. To further understand genotype by environment effects, we quantified plasticity functions and breakpoints among genotypes. Like other studies, we found strong evidence for phenotypic and plasticity differences among genotypes. However, we also found nonlinear plasticity functions and breakpoints were common across phenotypes, especially relative growth rates, biomass allocation and root architecture. Drought selected genotypes were also more likely to flower during recovery, but all genotypes were resilient to drought across treatments. We demonstrate that plasticity functions may help explain intraspecific diversity, patterns of selection and nonlinear community responses to more variable rainfall within an experimental population. In particular, plasticity functions can help disentangle drought/variability tolerance versus acquisitive strategies. A better understanding of intraspecific diversity in this grass species will provide more mechanistic insight into its ability to buffer ecosystem changes and provide resiliency in the tallgrass prairie under future droughts. A free Plain Language Summary can be found within the Supporting Information of this article.

Hoffman, Ava M.↗

AmeriFlux FLUXNET-1F US-AR1 ARM USDA UNL OSU Woodward Switchgrass 1

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-AR1 ARM USDA UNL OSU Woodward Switchgrass 1. This is the FLUXNET version of the carbon flux data for the site US-AR1 ARM USDA UNL OSU Woodward Switchgrass 1 produced by applying the standard ONEFlux (1F) software. Site Description - The ARM USDA UNL OSU Woodward Switchgrass 1 tower is located on public land owned by the USDA-ARS Southern Plains Range Research Station in Woodward, Oklahoma. The site is on a former native prairie that is in the process of changing to switchgrass. A second companion site (ARM USDA UNL OSU Woodward Switchgrass 2) is on a former wheat field. In Spring 2009, the former native prairie site was burned, cattle were put on the pasture to graze down emergent grass, and broadleaf herbicide was sprayed. In Summer 2009, the cattle were removed from the pasture, and the site was sprayed with herbicide to kill all grass. In Spring 2010, prior to the planting of switchgrass, final herbicide was sprayed to kill cheat grass and to control broadleaf plants.

Billesbach, Dave↗

Harnessing citizen science to contextualize adaptation mechanism discovery

Species occupying broad geographic regions have evolved multiple mechanisms to regulate phenological characteristics, enabling adaptations to diverse native habitats. By developing computer vision AI to process citizen science observations across native habitats over North America, we uncovered a consistent latitudinal trend of earlier flowering at higher latitudes in warm-season perennial grasses. To explore the underlying mechanisms of adaptation, we conducted common garden experiments with one species (switchgrass) and discovered the opposite latitudinal flowering-time trend. Integration of differential plasticity of GI-Hd1-FTL1 haplotypes of flowering time regulatory genes, haplotype range, and local environmental profiles found that observations from native habitats capture only part of the genotype-environment-phenotype spectrum established in common garden experiments, therefore reconciling the discrepancy. Two mechanisms emerged as key forces shaping current haplotype ranges and influencing future shifts. Our study highlights the power of combining citizen science observations with designed experiments to uncover mechanisms of adaptation across spatiotemporal scales.

FTL1↗

Contrasting Carbon–Water–Energy Dynamics in Perennial and Annual Bioenergy Agroecosystems Using Eddy Covariance and Interpretable Machine Learning

Understanding how agroecosystems respond to environmental variability is fundamental to predicting productivity and sustainability under a changing climate. We analyzed 55 site-years of high-frequency eddy covariance observations from five agroecosystems—two perennial grasses (miscanthus and switchgrass), two annual rotation systems (maize–soybean and sorghum–soybean), and a restored native prairie—to examine ecosystem-scale carbon, water, and energy fluxes. Using an interpretable machine-learning framework with regression tree ensembles, Shapley Additive Explanations, and Accumulated Local Effects, we quantified how environmental and temporal factors regulate gross primary productivity (GPP), evapotranspiration (ET), water-use efficiency, and the Bowen ratio. Perennials exhibited stronger physiological buffering and maintained fluxes across a broader range of temperature and moisture conditions, reflecting deeper rooting and persistent canopy cover. Annuals, in contrast, showed greater short-term variability and stronger coupling to atmospheric demand, with GPP and ET declining rapidly under low humidity or soil moisture. Differences in temperature sensitivity of Bowen ratio further revealed that perennials sustained proportionally greater sensible heat flux under cool conditions, whereas annuals exhibited constrained energy exchange when evaporative demand was low. Together, these results demonstrate that crop life cycle and canopy structure are fundamental determinants of ecosystem-scale carbon–water–energy coupling. By integrating long-term flux observations with interpretable machine learning, this study identifies the environmental drivers that shape agroecosystem function and highlights how conversion from annual to perennial feedstocks can enhance climatic resilience and alter land–atmosphere energy feedbacks. These findings provide a data-driven basis for improving crop and Earth-system models and for guiding bioenergy landscape design under future climate scenarios.

Accumulated Local Effects↗

AmeriFlux US-Jo1 Jornada Experimental Range Bajada Site

This is the AmeriFlux version of the carbon flux data for the site US-Jo1 Jornada Experimental Range Bajada Site. Site Description - The Jornada Basin Experimental Range (JER) covers 783 km2 in the La Jornada del Muerto Plain of the northern Chihuahuan Desert and is located 20km of Las Cruces, NM. Extensive livestock grazing at the JER and througout the US Southwest was coincident with large-scale grassland deterioration and transition to shrubland begining in the 1800s. The JER was established n 1912 to investigate these rangeland changes and has since become a central location for understanding dryland ecology. This flux tower monitors CO2 and H2O dynamics in a representative shrubland on the piedmont slope (bajada) of the San Andreas mountains. The dominant shrubs are evergreen Larrea tridentata (Creosote) and winter-deciduous Prosopis glandulosa (Honey Mesquite). Other cover types include Flourensia cernua (tarbush) and patchy occurences of the grasses Muhlenbergia porteri (Bush Muhly) and Dasyochloa pulchella (Fluff Grass). The site is occasionally visited by stray domestic cattle, free-ranging introduced Oryx, and other native herbivores (Jack Rabbits, Desert Pronghorn). Soils at the site are Ustic Calciargids and parent material consists of limestone, other sedimentary rock, and some igneous rock. Virtual Site Visit: https://youtu.be/v1uJCKuicqs​

Tweedie, Craig↗

AmeriFlux FLUXNET-1F US-Jo1 Jornada Experimental Range Bajada Site

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Jo1 Jornada Experimental Range Bajada Site. This is the FLUXNET version of the carbon flux data for the site US-Jo1 Jornada Experimental Range Bajada Site produced by applying the standard ONEFlux (1F) software. Site Description - The Jornada Basin Experimental Range (JER) covers 783 km2 in the La Jornada del Muerto Plain of the northern Chihuahuan Desert and is located 20km of Las Cruces, NM. Extensive livestock grazing at the JER and througout the US Southwest was coincident with large-scale grassland deterioration and transition to shrubland begining in the 1800s. The JER was established n 1912 to investigate these rangeland changes and has since become a central location for understanding dryland ecology. This flux tower monitors CO2 and H2O dynamics in a representative shrubland on the piedmont slope (bajada) of the San Andreas mountains. The dominant shrubs are evergreen Larrea tridentata (Creosote) and winter-deciduous Prosopis glandulosa (Honey Mesquite). Other cover types include Flourensia cernua (tarbush) and patchy occurences of the grasses Muhlenbergia porteri (Bush Muhly) and Dasyochloa pulchella (Fluff Grass). The site is occasionally visited by stray domestic cattle, free-ranging introduced Oryx, and other native herbivores (Jack Rabbits, Desert Pronghorn). Soils at the site are Ustic Calciargids and parent material consists of limestone, other sedimentary rock, and some igneous rock. Virtual Site Visit: https://youtu.be/v1uJCKuicqs​

Tweedie, Craig↗

Climate warming threatens the persistence of a community of disturbance-adapted native annual plants

With ongoing climate change, populations are expected to exhibit shifts in demographic performance that will alter where a species can persist. This presents unique challenges for managing plant populations and may require ongoing interventions, including in situ management or introduction into new locations. However, few studies have examined how climate change may affect plant demographic performance for a suite of species, or how effective management actions could be in mitigating climate change effects. Over the course of two experiments spanning 6 yr and four sites across a latitudinal gradient in the Pacific Northwest, United States, here we manipulated temperature, precipitation, and disturbance intensity, and quantified effects on the demography of eight native annual prairie species. Each year we planted seeds and monitored germination, survival, and reproduction. We found that disturbance strongly influenced demographic performance and that seven of the eight species had increasingly poor performance with warmer conditions. Across species and sites, we observed 11% recruitment (the proportion of seeds planted that survived to reproduction) following high disturbance, but just 3.9% and 2.3% under intermediate and low disturbance, respectively. Moreover, mean seed production following high disturbance was often more than tenfold greater than under intermediate and low disturbance. Importantly, most species exhibited precipitous declines in their population growth rates (λ) under warmer-than-ambient experimental conditions and may require more frequent disturbance intervention to sustain populations. Aristida oligantha, a C4 grass, was the only species to have λ increase with warmer conditions. These results suggest that rising temperatures may cause many native annual plant species to decline, highlighting the urgency for adaptive management practices that facilitate their restoration or introduction to newly suitable locations. Frequent and intense disturbances are critical to reduce competitors and promote native annuals’ persistence, but even such efforts may prove futile under future climate regimes.

54 ENVIRONMENTAL SCIENCES↗

Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection

Comparative genomics and plastome phylogenomics have advanced significantly in recent years, highlighting the diversity, possible admixture, and non-neutral evolution of the predominantly considered non-recombinant chloroplast genomes in angiosperms. The grass genus Brachypodium serves as a powerful model for studying evolutionary processes in monocots. We analyzed 287 plastomes across the native circum-Mediterranean range of the three annual Brachypodium species ( B. distachyon, B. stacei, B. hybridum ), focusing on their structural variation, selection patterns and phylogenomic relationships. Our analyses confirmed the differentiation of the S and D plastomes, inherited respectively from the diploid progenitor species B. stacei and B. distachyon . We identified novel structural rearrangements and indels, and unique repeat motifs, along with widespread heteroplasmy, particularly in ancestral B. hybridum -D plastotypes. SNP diversity varied among plastotypes, reflecting population dynamics and evolutionary histories, with B. hybridum -D plastotypes showing the highest normalized diversity and B. hybridum -S the lowest. Positive selection was detected in 29 plastid genes by Tajima’s neutrality test, and in nine genes by site and branch-site evolutionary models, including matK, ndhF, rbcL, and rpoC2. Phylogenomic analyses revealed well-supported clades corresponding to the S and D plastome lineages, with frequent chloroplast capture events and long-distance dispersals shaping their evolutionary trajectories.

allopolyploidy↗