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DOE OSTI2025

1000 Soils Pilot Dataset, version 8, May 2025

This record hosts data generated by the 1000 Soils Pilot. Data will be updated as more become available. Please see the most recent data upload for current data. A beta visualization tool is available for some data types at https://shinyproxy.emsl.pnnl.gov/app/1000soils. Please submit any suggestions or comments through the 'contact' tab. We are actively working to improve visualizations and value all feedback. Data completed include: Geochemistry, texture, respiration, and enzyme activities FTICR-MS organic matter chemistry Microbial biomass C and N TOC/TDN of water-extractable OM X-ray computed tomography (derived metrics available here, raw data available upon request) Metagenomes; a variety of data formats are available upon request Soil hydraulic properties Data in progress: LC-MS/MS in development, timeline TBD, inquire for status 1000S_processed_BGC_summary.csv contains all available biogeochemical data; microbial biomass C and N; and TOC/TDN of water-extractable OM; and 1000S_Tomography.xslx contains a summary of data generated via X-ray computed tomography. icr_v2_corems2.csv contains FTICR-MS data processed by CoreMS version 2. These data are merged by formula across instrument runs to enable cross-sample comparisons. Technical replicates are merged by retaining peaks present in 2 out of 3 replicates. 1000Soils_Metadata_Site_Mastersheet_v1.csv contains site information. Soil Hydraulics_corrected_02042025.xlsx contains soil hydraulics information. Readme File_v4.xlsx is the readme file. Please contact the MONet project (monet.emsl@pnnl.gov) or Emily Graham (emily.graham@pnnl.gov) with questions. The following file and all raw data are available upon request: icr_by_mass_for_single_sample_analysis_only.csv contains FTICR-MS data processed by CoreMS and is intended for usage in the calculation of biochemical transformations within samples only. These data are not acceptable for cross-sample comparison of masses because they are from multiple instrument runs. For more information, please see: https://www.emsl.pnnl.gov/monet and https://sc-data.emsl.pnnl.gov/monet Acknowledgment: Soil data were provided by the Molecular Observation Network (MONet) at the Environmental Molecular Sciences Laboratory (https://ror.org/04rc0xn13), a DOE Office of Science user facility sponsored by the Biological and Environmental Research program under Contract No. DE-AC05-76RL01830. The work (proposal: 10.46936/10.25585/60008970) conducted by the U.S. Department of Energy, Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science user facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. The Molecular Observation Network (MONet) database is an open, FAIR, and publicly available compilation of the molecular and microstructural properties of soil. Data in the MONet open science database can be found at https://sc-data.emsl.pnnl.gov/.

biogeochemistry↗
DOE OSTI2020

Validation of RU-WRF, the Custom Atmospheric Mesoscale Model of the Rutgers Center for Ocean Observing Leadership

The Rutgers University Center for Ocean Observing Leadership (RU-COOL) contracted the National Renewable Energy Laboratory (NREL) to evaluate RU-COOL's atmospheric observation and modeling capabilities for characterizing the New Jersey offshore wind resource. The observational network used by RU-COOL consists of mostly public but some private coastal and offshore buoy-based stations. The core wind resource modeling capability of RU-COOL is a custom setup of the Weather Research and Forecasting (WRF) mesoscale model, referred to in this report as RU-WRF. The most unique feature of RU-WRF and not found in other WRF model setups is the use of custom sea surface temperature (SST) product generated by RU-COOL. This custom product was designed to better capture the unique coastal upwelling and strong storm mixing in the Mid-Atlantic Bight, which other typical SST products are not designed to capture. Funding for the development, maintenance, and use of RU-WRF by RU-COOL is provided by the New Jersey Board of Public Utilities, who also funded the validation work presented in this report. In this validation study, NREL was specifically tasked to: 1) Assess the observational network used by RU-COOL to validate RU-WRF and make recommendations for improvement, 2) Assess methods used by RU-COOL to validate RU-WRF and make recommendations for improvement, 3) Examine the inputs to and setup within RU-WRF, compare against available NREL data sets, and make recommendations for improvement.

17 WIND ENERGY↗
NASA NTRSDate not supplied

A Ground-Based Network for Improved Validation of Satellite Carbon Dioxide and Methane Observations Over the Eastern United States

Satellite observations of greenhouse gases (GHGs), notably carbon dioxide and methane, over the Eastern United States, are currently only validated indirectly and/or sporadically. There are only four existing routine, ground-based remote sensing locations in the United States suitable for validation of satellite GHG observations: Edwards and Pasadena, CA, Lamont, OK, and Park Falls, WI as part of the Total Carbon Column Observing Network (TCCON). Among other efforts, e.g. the Network for the Detection of Atmospheric Composition Change (NDACC) and EM27/SUN deployments led by the University of Toronto, the only sites west of the Mississippi River are Park Falls, WI and Toronto, ON. The only remaining validation tools, vicarious calibration and airborne campaigns, are sporadic in space and/or time and thus coincide with only a small subsample of available soundings and conditions. As a result, satellite GHG observations over the east coast of the United States, home to more than half of its population, lack a consistent, widespread means of validation. We describe an ongoing effort to position 8 EM27/SUN spectrometers along the Eastern Seaboard over the next two years. The goals of this effort are to improve both satellite validation and our understanding of human and natural influences on the carbon cycle of the Eastern US, the former enabling the latter. This work is intended to augment past, ongoing, and future inter-agency programs, e.g., the NIST Urban Testbed, routine aircraft and aircore sampling by NOAA, and NASA’s Atmospheric Carbon and Transport (ACT)-America sub-orbital campaign, in particular by offering information on broader time and spatial scales than what is already available while maintaining the high-accuracy constraints of in situ data. We will present early analysis including siting considerations to capture local and/or background conditions and comparison to NASA’s Goddard Earth Observing System (GEOS) modeling and assimilation systems. This includes a 40-day, 3-km horizontal resolution global simulation of early 2020 and a 50-km retrospective analysis of Orbiting Carbon Observatory 2 (OCO-2) observations over 2015-present. Both are valuable tools for analyzing expected and observed signals and are useful boundary conditions for yet higher-resolution studies.

Brad Weir↗
DOE OSTI2022

It takes a village: using a crowdsourced approach to investigate organic matter composition in global rivers through the lens of ecological theory

Though community-based scientific approaches are becoming more common, many scientific efforts are conducted by small groups of researchers that together develop a concept, analyze data, and interpret results that ultimately translate into a publication. Here, we present a community effort that breaks these traditional boundaries of the publication process by engaging the scientific community from initial hypothesis generation to final publication. We leverage community-generated data from the Worldwide Hydrobiogeochemistry Observation Network for Dynamic River Systems (WHONDRS) consortium to study organic matter composition through the lens of ecological theory. This community endeavor will use a suite of paired physical and chemical datasets collected from 97 river corridors across the globe. With our first step aimed at ideation, we engaged a community of scientists from 20 countries and 60 institutions, spanning disciplines and career stages by holding a virtual workshop (April 2021). In the workshop, participants generated content for questions, hypotheses, and proposed analyses based on the WHONDRS dataset. These ideation efforts resulted in several narratives investigating different questions led by different teams, which will be the basis for research articles in a Frontiers in Water collection. Currently, the community is collectively analyzing, interpreting, and synthesizing these data that will result in seven crowdsourced articles using a single, existing WHONDRS dataset. The use of a shared dataset across articles not only lowers barriers for broad participation by not requiring generation of new data, but also provides unique opportunities for emergent learning by connecting outcomes across studies. Here we will explain methods used to enable this community endeavor aimed to promote a greater diversity of thinking on river corridor biogeochemistry through community science.

Borton, Mikayla A.↗
DOE OSTI2021

A data-driven global soil heterotrophic respiration dataset and the drivers of its inter-annual variability

Soil heterotrophic respiration (SHR), one of the primary carbon fluxes from terrestrial ecosystems to the atmosphere, is important for carbon-climate feedbacks because of its sensitivity to available litter and soil carbon, climatic conditions, and nutrient availability. However, until recently limited SHR data were available, and most published global SHR estimates have either a short time span, coarse spatial resolution, or reply on overly-simple model formulations. To better understand and quantify the global distribution of SHR and its sensitivity to climate variability, we produced a new global SHR dataset using Random Forest algorithms, up-scaling 455 point data from the Global Soil Respiration Database (SRDB 4.0) with gridded fields of climatic, edaphic and productivity as explanatory variables. We estimated a global total SHR of 46.8 Pg C yr-1 over 1985-2013 (95% confidence interval: 38.6-56.3 Pg C yr-1), with a significant increasing trend of 0.03 Pg C yr-2 during this period. We found that the choice of soil moisture datasets contributes more to the difference among these data-driven SHR members rather than that of productivity, temperature and precipitation data sources. We also analyzed the influence of climatic variables on the inter-annual variability (IAV) of our SHR product. Water availability was the dominant driver of IAV at global scales, although the inferred sensitivity depends on the choice of the soil moisture gridded dataset. At the ecosystem scale, temperature strongly controls the IAV of SHR in tropical forests, while water availability dominates in extra-tropical forest and semi-arid regions. Our machine-learning gridded SHR dataset and outputs from process-based land surface models (TRENDYv6) show agreement for a strong association between water variability and SHR IAV at the global scale, but the two approaches lead to different temporal trend globally and different controlling variables for IAV at the ecosystem scale. Our study provides evidence for the pervasive and important role of water availability in driving SHR, indicating both a direct effect limiting decomposition rates and an indirect effect through the amount of fresh organic matter made available to SHR from productivity. In consideration of potential limitations and uncertainties remaining in our data-driven SHR datasets, we call for a more scientifically designed observation network for SHR, more observation data compilation, and increased use of deep learning methods making maximum use of observation data in hand. This will benefit process-based models, and improve our understanding of SHR response to future anomalous environmental conditions.

Yao, Yitong↗
NASA NTRS1984

The astrometry network of observers in China

In China, the Purple Mountain Observatory (32 deg. 04 min. N and 118 deg. 49 min. E), the Shanghai Observatory (31 deg 06 min N and 121 deg 11 min E), and the Qingdao Station (36 deg 05 min N and 120 deg 19 min E) will take part in the astrometry of Halley's Comet. The astrometric work together with the instrumentation used, is given.

Gong, S. M.↗
NASA NTRS1999

Global Observation Information Networking: Using the Distributed Image Spreadsheet (DISS)

The DISS and many other tools will be used to present visualizations which span the period from the original Suomi/Hasler animations of the first ATS-1 GEO weather satellite images in 1966 ....... to the latest 1999 NASA Earth Science Vision for the next 25 years. Hot off the SGI Onyx Graphics-Supercomputers are NASA's visualizations of Hurricanes Mitch, Georges, Fran and Linda. These storms have been recently featured on the covers of National Geographic, Time, Newsweek and Popular Science and used repeatedly this season on National and International network TV. Results will be presented from a new paper on automatic wind measurements in Hurricane Luis from 1-min GOES images that appeared in the November BAMS.

Hasler, Fritz↗
NASA NTRS2017

NeMO-Net The Neural Multi-Modal Observation Training Network for Global Coral Reef Assessment

In the past decade, coral reefs worldwide have experienced unprecedented stresses due to climate change, ocean acidification, and anthropomorphic pressures, instigating massive bleaching and die-off of these fragile and diverse ecosystems. Furthermore, remote sensing of these shallow marine habitats is hindered by ocean wave distortion, refraction and optical attenuation, leading invariably to data products that are often of low resolution and signal-to-noise (SNR) ratio. However, recent advances in UAV and Fluid Lensing technology have allowed us to capture multispectral 3D imagery of these systems at sub-cm scales from above the water surface, giving us an unprecedented view of their growth and decay. Exploiting the fine-scaled features of these datasets, machine learning methods such as MAP, PCA, and SVM can not only accurately classify the living cover and morphology of these reef systems (below 8 error), but are also able to map the spectral space between airborne and satellite imagery, augmenting and improving the classification accuracy of previously low-resolution datasets.We are currently implementing NeMO-Net, the first open-source deep convolutional neural network (CNN) and interactive active learning and training software to accurately assess the present and past dynamics of coral reef ecosystems through determination of percent living cover and morphology. NeMO-Net will be built upon the QGIS platform to ingest UAV, airborne and satellite datasets from various sources and sensor capabilities, and through data-fusion determine the coral reef ecosystem makeup globally at unprecedented spatial and temporal scales. To achieve this, we will exploit virtual data augmentation, the use of semi-supervised learning, and active learning through a tablet platform allowing for users to manually train uncertain or difficult to classify datasets. The project will make use of Pythons extensive libraries for machine learning, as well as extending integration to GPU and High-End Computing Capability (HECC) on the Pleiades supercomputing cluster, located at NASA Ames. The project is being supported by NASAs Earth Science Technology Office (ESTO) Advanced Information Systems Technology (AIST-16) Program.

Remote Sensin↗
NASA NTRS2020

NeMO-Net – The Neural Multi-Modal Observation & Training Network for Global Coral Reef Assessment

We present NeMO-Net, the Srst open-source deep convolutional neural network (CNN) and interactive learning and training software aimed at assessing the present and past dynamics of coral reef ecosystems through habitat mapping into 10 biological and physical classes. Shallow marine systems, particularly coral reefs, are under significant pressures due to climate change, ocean acidification, and other anthropogenic pressures, leading to rapid, often devastating changes, in these fragile and diverse ecosystems. Historically, remote sensing of shallow marine habitats has been limited to meter-scale imagery due to the optical effects of ocean wave distortion, refraction, and optical attenuation. NeMO-Net combines 3D cm-scale distortion-free imagery captured using NASA FluidCam and Fluid lensing remote sensing technology with low resolution airborne and spaceborne datasets of varying spatial resolutions, spectral spaces, calibrations, and temporal cadence in a supercomputer-based machine learning framework. NeMO-Net augments and improves the benthic habitat classification accuracy of low-resolution datasets across large geographic ad temporal scales using high-resolution training data from FluidCam.NeMO-Net uses fully convolutional networks based upon ResNet and ReSneNet to perform semantic segmentation of remote sensing imagery of shallow marine systems captured by drones, aircraft, and satellites, including WorldView and Sentinel. Deep Laplacian Pyramid Super-Resolution Networks (LapSRN) alongside Domain Adversarial Neural Networks (DANNs) are used to reconstruct high resolution information from low resolution imagery, and to recognize domain-invariant features across datasets from multiple platforms to achieve high classification accuracies, overcoming inter-sensor spatial, spectral and temporal variations.Finally, we share our online active learning and citizen science platform, which allows users to provide interactive training data for NeMO-Net in 2D and 3D, integrated within a deep learning framework. We present results from the PaciSc Islands including Fiji, Guam and Peros Banhos 1 1 2 1 3 1 where 24-class classification accuracy exceeds 91%.

Chirayath, Ved↗
NASA NTRS2017

Gaining the most utility from our geospace observational system: Network analysis of total electron content as a means to understand space weather to the point of prediction

We present the first network analysis of interplanetary magnetic field (IMF) clock angle dependent, high-latitude, hemispheric-specific total electron content (TEC) data. We examine network parameters to describe spatio-temporal correlations in the TEC data for January 2016. We find that significant network structure exists distinguishing the dayside and nightside ionosphere, and specific features in the high-latitudes (cusp/ionospheric footpoints of magnetospheric boundary layers, polar cap, and auroral zone), and that these features vary with IMF clock angle. In this brief summary paper, we provide proof of concept results and identify important areas of future research, providing a basis for the discussion of network analysis and machine learning approaches for space weather applications.

Malik, Nishant↗
DOE OSTI2025

GNSS Installation at the ARM Southern Great Plains (SGP) Atmospheric Observatory Field Campaign Report

GRUAN, the GCOS Reference Upper Air Network, is an international reference observing network of sites measuring essential climate variables above Earth's surface, designed to fill an important gap in the current global observing system. GRUAN’s objectives are to (1) provide long-term, high-quality climate records, (2) constrain and calibrate data from more spatially comprehensive global observing systems (including satellites and current radiosonde networks), and (3) fully characterize the properties of the atmospheric column.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2018

Southern California Megacity CO2, CH4, and CO Flux Estimates Using Ground- and Space-Based Remote Sensing and a Lagrangian Model

We estimate the overall CO2, CH4, and CO flux from the South Coast Air Basin using an inversion that couples Total Carbon Column Observing Network (TCCON) and Orbiting Carbon Observatory-2 (OCO-2) observations, with the Hybrid Single Particle Lagrangian Integrated Trajectory (HYSPLIT) model and the Open-source Data Inventory for Anthropogenic CO2 (ODIAC). Using TCCON data we estimate the direct net CO2 flux from the So-CAB to be 104±26 Tg CO2 yr(exp -1) for the study period of July 2013–August 2016. We obtain a slightly higher estimate of 120±30 Tg CO2 yr(exp -1) using OCO-2 data. These CO2 emission estimates are on the low end of previous work. Our net CH4 (360±90 Gg CH4 y(exp -1)) flux estimate is in agreement with central values from previous top-down studies going back to 2010 (342–440 Gg CH4 yr(exp -1)). CO emissions are estimated at 487±122 Gg CO yr(exp -1), much lower than previous top-down estimates (1440 Gg CO yr(exp -1)). Given the decreasing emissions of CO, this finding is not unexpected. We perform sensitivity tests to estimate how much errors in the prior, errors in the covariance, different inversion schemes, or a coarser dynamical model influence the emission estimates. Overall, the uncertainty is estimated to be 25%, with the largest contribution from the dynamical model. Lessons learned here may help in future inversions of satellite data over urban areas.

Total Carbon Column Observing Network (TCCON)↗
NASA NTRS1972

EUV observations of the chromospheric network.

Extreme ultraviolet observations of a quiet region of the sun on Aug. 18, 1969, with the Harvard spectroheliometer on OSO 6 indicate that the chromospheric network can be observed in lines of the chromosphere and transition region (T = 840,000 K) with almost identical structure. At coronal heights, the network changes but some residual structure can still be discerned in Mg X and perhaps Si XII, although there is little or no evidence remaining in Fe XVI.

Reeves, E. M.↗
NASA NTRSDate not supplied

Generating a 4D Global CH(4) Product by Assimilating TROPOMI column CH(4) in NASA’s GEOS GCM

Examination of temporal and spatial CH4 variability is crucial for better understanding the human and natural processes driving climate change and ultimately designing mitigation strategies. Here we present an analysis framework that uses NASA’s GEOS General Circulation Model (GCM) to construct a high-resolution, time varying picture of atmospheric CH4 consistent with measurements from a variety of platforms, both in situ and remotely sensed. The resulting time varying atmospheric CH4 product can (i) support interpretation of high-resolution point source detection approaches, (ii) provide reanalysis fields for CH4 and other greenhouse gases, and (iii) supply boundary conditions for regional models. Our approach starts with a set of CH4 emissions from various inventories that have been adjusted to match the global annual growth rate over recent decades. These emissions are transported by the GEOS GCM, which in turn is constrained by meteorology from NASA’s Modern-Era Retrospective analysis for Research and Applications, Version 2 (MERRA-2) product. The simulated atmospheric field is compared with CH4 measurements, such as those from the TROPOspheric Monitoring Instrument (TROPOMI), and adjustments calculated following a Bayesian protocol. The accuracy of the resultant optimal atmospheric CH4 field can be demonstrated by its improved agreement (compared to a direct simulation of the CH4 inventories) with a host of independent CH4 measurements, such as those from the Total Carbon Column Observation Network (TCCON) and in situ observations from surface and airborne platforms.

Nikolay V. Balashov↗