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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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DOE OSTI2022

Leveraging Compiler-Based Translation to Evaluate a Diversity of Exascale Platforms

Accelerator-based heterogeneous computing is the de facto standard in current and upcoming exascale machines. These heterogeneous resources empower computational scientists to select a machine or platform well-suited to their domain or applications. However, this diversity of machines also poses challenges related to programming model selection: inconsistent availability of programming models across different exascale systems, lack of performance portability for those programming models that do span several systems, and inconsistent performance between different models on a single platform. We explore these challenges on exascale-similar hardware, including AMD MI100 and NVIDIA A100 GPUs. By extending the sourceto-source compiler OpenARC, we demonstrate the power of automated translation of applications written in a single frontend programming model (OpenACC) into a variety of backend models (OpenMP, OpenCL, CUDA, HIP) that span the upcoming exascale environments. This translation enables us to compare performance within and across devices and to analyze programming model behavior with profiling tools.

Lambert, Jacob↗

DOE OSTI2025

Upgrade to Fixed and Translating Scintillation-based Loss Detector System in the Fermilab Drift Tube Linac

The closed-off structure of the Fermilab Drift Tube Linac precludes a robust array of instrumentation from directly monitoring the H- beam that is accelerated from 750 keV to 116 MeV. To improve beam tuning and operational assessment of Drift Tube Linac performance, scintillator-based loss monitors were previously installed along the exterior of the first two accelerating cavities to assess low energy beam losses. Here we present a recent upgrade to the loss monitor system, including significant improvements in analog signal processing to address baseline-interfering noise; digitization of the signals to enable regular operational use and tuning; and a new remote operation upgrade of the translating loss monitor with precise positioning of the loss monitor along its nine-foot track. Data from the fixed and translating detectors collected under varying beam conditions validate the utility of the upgrade.

Chen, E. V. [Fermilab]↗

DOE OSTI2021

IPv6 Tunneling and Translation Technologies Pilot

Based on the latest DOE (Department of Energy) milestones, Sandia needs to convert to IPv6 (Internet Protocol version 6)-only networks over the next 5 years. Our original IPv6 migration plan did not include migrating to IPv6-only networks at any point within the next 10 years, so it must necessarily change. To be successful in this endeavor, we need to evaluate technologies that will enable us to deploy IPv6-only networks early without creating system stability or security issues. We have set up a test environment using technology representative of our production network where we configured and evaluated industry standard translation technologies and techniques. Based on our results, bidirectional translation between IPv4 (Internet Protocol version 4) and IPv6 is achievable with our current equipment, but due to the complexity of the configuration, may not scale well to our production environment.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

Methods for Translating ReEDS Solutions to Production Cost Modeling Tools

Capacity expansion modeling tools are increasingly being utilized to investigate a wide range of potential future scenarios, particularly with high penetrations of variable and energy-constrained resources that may be operated differently than current dispatch paradigms. While capacity expansion models are particularly adept at making investment decisions for future years, they must make compromises in operational aspects to maintain computational tractability. However, it is of high interest to determine if such future systems would be able to maintain reliability during a variety of grid conditions, and to identify any potential operational challenges for these systems at finer temporal resolution than is typically captured in CEMs. As such, there is value in having an automated tool that can convert many CEM investment pathways into inputs for a more detailed production cost model, in this case the PLEXOS commercial software package. This paper describes the methodology used to make that translation for the NREL-developed ReEDS model, making use of two internally developed tools - PIDG and beetle - along with a set of processing scripts. We describe the current assumptions, data sets, and important operational characteristics of these translations along with an example of the extended analyses that may be done through this connection.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2023

Xyce™ XDM Netlist Translator User Guide (V.2.7)

The Xyce XDM Netlist Translator is a software solution developed by Sandia National Laboratories for translating SPICE netlists into a format readable by Xyce, Sandia’s internally developed SPICE-compatible simulation tool.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2025

Upgrade to Fixed and Translating Scintillation-Based Loss Detector System in the Fermilab Drift Tube Linac

The closed-off structure of the Fermilab Drift Tube Linac precludes a robust array of instrumentation from directly monitoring the H- beam that is accelerated from 750 keV to 116 MeV. To improve beam tuning and op-erational assessment of Drift Tube Linac performance, scintillator-based loss monitors were previously installed along the exterior of the first two accelerating cavities to assess low energy beam losses. Here we present a recent upgrade to the loss monitor system, including significant improvements in analog signal processing to address baseline-interfering noise; digitization of the signals to enable regular operational use and tuning; and a new remote operation upgrade of the translating loss monitor with precise positioning of the loss monitor along its nine-foot track. Data from the fixed and translating de-tectors collected under varying beam conditions validate the utility of the upgrade.

Chen, Erin V. [Fermilab] (ORCID:0000000215467899)↗

DOE OSTI2020

Dynamically adapting mechanism for translation lookaside buffer shootdowns

An operating system (OS) of a processing system having a plurality of processor cores determines a cost associated with different mechanisms for performing a translation lookaside buffer (TLB) shootdown in response to, for example, a virtual address being remapped to a new physical address, and selects a TLB shootdown mechanism to purge outdated or invalid address translations from the TLB based on the determined cost. In some embodiments, the OS selects an inter-processor interrupt (IPI) as the TLB shootdown mechanism if the cost associated with sending an IPI is less than a threshold cost. In some embodiments, the OS compares the cost of using an IPI as the TLB shootdown mechanism versus the cost of sending a hardware broadcast to all processor cores of the processing system as the shootdown mechanism and selects the shootdown mechanism having the lower cost.

42 ENGINEERING↗

DOE OSTI2020

Understanding and Explicitly Measuring Linguistic and Stylistic Properties of Deception via Generation and Translation

Massive digital disinformation is one of the main risks of modern society. Hundreds of models and linguistic analyses have been done to compare and contrast misleading and credible content online. However, most models do not remove the confounding factor of a topic or narrative when training, so the resulting models learn a clear topical separation for misleading versus credible content. We study the feasibility of using two strategies to disentangle the topic bias from the models to understand and explicitly measure linguistic and stylistic properties of content from misleading versus credible content. First, we develop conditional generative models to create news content that is characteristic of different credibility levels. We perform multi-dimensional evaluation of model performance on mimicking both the style and linguistic differences that distinguish news of different credibility using machine translation metrics and classification models. We show that even though generative models are able to imitate both the style and language of the original content, additional conditioning on both the news category and the topic leads to reduced performance. In a second approach, we perform deception style ``transfer" by translating deceptive content into the style of credible content and vice versa. Extending earlier studies, we demonstrate that, when conditioned on a topic, deceptive content is shorter, less readable, more biased, and more subjective than credible content, and transferring the style from deceptive to credible content is more challenging than the opposite direction.

Saldanha, Emily G.↗

DOE OSTI2024

SEED Platform for Building Performance Standards Implementation Guide (Spanish Translation)

This guide provides an overview of the Standard Energy Efficiency Data (SEED) Platform. The SEED Platform developed by the U.S. Department of Energy (DOE) to provide a low-cost, user-friendly tool for jurisdictions to launch and manage energy benchmarking and Building Performance Standard (BPS) programs. It has been translated into Spanish. This is the Spanish translation of NREL/FS-5500-90691.

benchmarking↗

DOE OSTI2024

SEED Platform for Building Performance Standards Implementation Guide (French Translation)

benchmarking↗

DOE OSTI2024

SEED Platform for Building Performance Standards Implementation Guide (Arabic Translation)

benchmarking↗

DOE OSTI2024

SEED Platform for Building Performance Standards Implementation Guide (Mandarin Translation)

benchmarking↗

DOE OSTI2023

Analysis of a macrophage carbamylated proteome reveals a function in post-translational modification crosstalk

Background. Lysine carbamylation is a biomarker of rheumatoid arthritis and kidney diseases. However, its cellular function is understudied due to the lack of tools for systematic analysis of this post-translational modification (PTM). Methods. We adapted a method to analyze carbamylated peptides by co-affinity purification with acetylated peptides based on the cross-reactivity of anti-acetyllysine antibodies. We also performed immobilized-metal affinity chromatography to enrich for phosphopeptides, which allowed us to obtain multi-PTM information from the same samples. Results. By testing the pipeline with RAW 264.7 macrophages treated with bacterial lipopolysaccharide, 7,299, 8,923 and 47,637 acetylated, carbamylated, and phosphorylated peptides were identified, respectively. Our analysis showed that carbamylation occurs on proteins from a variety of functions on sites with similar as well as distinct motifs compared to acetylation. To investigate possible PTM crosstalk, we integrated the carbamylation data with acetylation and phosphorylation data, leading to the identification 1,183 proteins that were modified by all 3 PTMs. Among these proteins, 54 had all 3 PTMs regulated by lipopolysaccharide and were enriched in immune signaling pathways, and in particular, the ubiquitin-proteasome pathway. We found that carbamylation of linear diubiquitin blocks the activity of the anti-inflammatory deubiquitinase OTULIN. Conclusions. Overall, our data show that anti-acetyllysine antibodies can be used for effective enrichment of carbamylated peptides. Moreover, carbamylation may play a role in PTM crosstalk with acetylation and phosphorylation, and that it is involved in regulating ubiquitination in vitro.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Molecular Engineering of 2D Nanomaterial Field-Effect Transistor Sensors: Fundamentals and Translation across Innovation Spectrum

We report over the last decade, 2D layered nanomaterials have attracted significant attention across the scientific community due to their rich and exotic properties. Various nanoelectronic devices based on these 2D nanomaterials have been explored and demonstrated, including those for environmental applications. Here, the fundamental attributes of 2D layered nanomaterials for field-effect transistor (FET) sensors and tunneling FET (TFET) sensors, which provide versatile detection of water contaminants such as heavy-metal ions, bacteria, nutrients, and organic pollutants, are discussed. The major challenges and opportunities are also outlined for designing and fabricating 2D nanomaterial FET/TFET sensors with superior performance. Translation of these FET/TFET sensors from fundamental research to applied technology is illustrated through a case study on graphene-based real-time FET water sensors. A second case study centers on large-scale sensor networks for water-quality monitoring to enable intelligent drinking water and river-water systems. Overall, 2D nanomaterial FET sensors have significant potential for enabling a human-centered intelligent water system that can likely be applied to other precarious water supplies around the globe.

2D nanomaterials↗

DOE OSTI2021

Temporal dynamics of protein and post-translational modification abundances in Populus leaf across a diurnal period

Populus spp. are dedicated woody biomass feedstocks for advanced biofuels and bioproducts. Proper growth and fitness of poplar as a sustainable feedstock depends on timely perception and response to environmental signals (e.g., light, temperature, water). Poplar leaves, like other C3 photosynthesis plants, have evolved oscillating or circadian rhythms that play important roles in synchronizing biological processes with external cues. To characterize this phenomenon at a molecular level, we employed bottom-up proteomics using high-resolution mass spectrometry and de novo-assisted database searching to identify abundance changes in proteins and post-translational modifications in poplar leaf tissue sampled across a 12/12-hour light/dark diurnal period.

09 BIOMASS FUELS↗

DOE OSTI2023

Thiol redox proteomics: Characterization of thiol-based post-translational modifications

Redox post-translational modifications on cysteine thiols (redox PTMs) have profound effects on protein structure and function, thus enabling regulation of various biological processes. Redox proteomics approaches aim to characterize the landscape of redox PTMs at the systems level. These approaches facilitate studies of condition-specific, dynamic processes implicating redox PTMs and have furthered our understanding of redox signaling and regulation. Mass spectrometry (MS) is a powerful tool for such analyses which has been demonstrated by significant advances in redox proteomics during the last decade. A group of well-established approaches involves the initial blocking of free thiols followed by selective reduction of oxidized PTMs and subsequent enrichment for downstream detection. Alternatively, novel chemoselective probe-based approaches have been developed for various redox PTMs. Direct detection of redox PTMs without any enrichment has also been demonstrated given the sensitivity of contemporary MS instruments. This review discusses the general principles behind different analytical strategies and covers recent advances in redox proteomics. Several applications of redox proteomics are also highlighted to illustrate how large-scale redox proteomics data can lead to novel biological insights.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2026

Thiol post-translational modifications modulate allosteric regulation of the OpcA–G6PDH complex through conformational gate control

In cyanobacteria, the redox-sensitive protein OpcA acts as a metabolic switch for G6PDH, enabling rapid adjustment of reducing power generation from glycogen catabolism and thereby precisely regulating carbon flux between anabolic and catabolic pathways. Although redox-sensitive cysteines in OpcA are known to regulate G6PDH, the mechanisms by which redox post-translational modifications (PTMs) on OpcA control G6PDH structure and activity remain unclear. Here, we combine computational modeling with experimental redox proteomics in Synechococcus elongatus PCC 7942 to dissect this mechanism. Experimentally, redox proteome analysis revealed differential redox PTM patterns, particularly on cysteines within the G6PDH-binding site of OpcA. These environmentally sensitive PTM changes at the interface suggest that thiol modifications in this region form a key regulatory node. More broadly, redox proteomics identified site-specific cysteine modifications under light/dark transitions and circadian cycling, linking distinct redox regimes to discrete PTM states. We employed PTM-Psi simulations to show that thiol PTMs near the OpcA–G6PDH interface are critical for allosteric regulation of G6PDH. The thiol PTMs on OpcA affect a putative gate region in G6PDH for substrate ingress and product egress as well as key hydrogen-bond networks within the active site. We infer that PTMs on OpcA tune the conformational landscapes of individual G6PDH subunits toward functionally relevant configurations according to environmental gradients, biasing the enzyme toward catalytically favorable states. Together, our results reveal a molecular mechanism in which thiol PTMs on OpcA modulate G6PDH structure and function through PTM-induced reorganization of conformational dynamics and allosteric communication. These findings demonstrate that PTM-level regulation provides a critical control layer from genotypes to phenotypes that enables cyanobacteria to rapidly adapt to environmental fluctuations through precise metabolic fine-tuning.

Allosteric regulation↗

DOE OSTI2021

Detection of translational noncrystallographic symmetry in Patterson functions

Detection of translational noncrystallographic symmetry (TNCS) can be critical for success in crystallographic phasing, particularly when molecular-replacement models are poor or anomalous phasing information is weak. If the correct TNCS is detected then expected intensity factors for each reflection can be refined, so that the maximum-likelihood functions underlying molecular replacement and single-wavelength anomalous dispersion use appropriate structure-factor normalization and variance terms. Here, an analysis of a curated database of protein structures from the Protein Data Bank to investigate how TNCS manifests in the Patterson function is described. These studies informed an algorithm for the detection of TNCS, which includes a method for detecting the number of vectors involved in any commensurate modulation (the TNCS order). The algorithm generates a ranked list of possible TNCS associations in the asymmetric unit for exploration during structure solution.

59 BASIC BIOLOGICAL SCIENCES↗